Wall clock time and date at job start Wed Apr 1 2020 01:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99739 * 2 1 4 4 H 1.08990 * 109.46906 * 329.99412 * 3 2 1 5 5 C 1.53001 * 109.47015 * 89.99997 * 3 2 1 6 6 C 1.53002 * 109.46858 * 209.99688 * 3 2 1 7 7 C 1.53000 * 109.47220 * 65.00183 * 6 3 2 8 8 C 1.50701 * 109.47072 * 179.97438 * 7 6 3 9 9 O 1.21277 * 119.99810 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99638 * 179.97438 * 8 7 6 11 11 C 1.46927 * 120.63516 * 359.97438 * 10 8 7 12 12 C 1.53192 * 108.77318 * 126.41107 * 11 10 8 13 13 C 1.53041 * 109.31320 * 54.63839 * 12 11 10 14 14 C 1.53033 * 109.53898 * 298.63305 * 13 12 11 15 15 H 1.09000 * 109.49457 * 301.41562 * 14 13 12 16 16 N 1.46894 * 109.49793 * 181.31580 * 14 13 12 17 17 C 1.46899 * 111.00242 * 85.16403 * 16 14 13 18 18 C 1.50694 * 109.47614 * 180.02562 * 17 16 14 19 19 O 1.21298 * 119.99764 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00355 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00274 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99836 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00058 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00037 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00036 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47285 * 89.99984 * 25 23 21 27 27 H 1.48501 * 109.47057 * 209.99776 * 25 23 21 28 28 H 1.48502 * 109.47245 * 329.99784 * 25 23 21 29 29 C 1.46926 * 120.62904 * 180.02562 * 10 8 7 30 30 H 1.08993 * 109.47698 * 300.00128 * 1 2 3 31 31 H 1.08997 * 109.46997 * 60.00762 * 1 2 3 32 32 H 1.09008 * 109.46878 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47408 * 59.99511 * 5 3 2 34 34 H 1.09001 * 109.47034 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.46926 * 299.99748 * 5 3 2 36 36 H 1.08997 * 109.47385 * 304.99702 * 6 3 2 37 37 H 1.09002 * 109.46581 * 185.00240 * 6 3 2 38 38 H 1.08998 * 109.46894 * 59.99785 * 7 6 3 39 39 H 1.09009 * 109.46754 * 299.99682 * 7 6 3 40 40 H 1.08997 * 109.58859 * 246.20187 * 11 10 8 41 41 H 1.09001 * 109.58530 * 6.48424 * 11 10 8 42 42 H 1.09005 * 109.49451 * 174.58740 * 12 11 10 43 43 H 1.08994 * 109.50120 * 294.65354 * 12 11 10 44 44 H 1.09002 * 109.46121 * 58.65084 * 13 12 11 45 45 H 1.09004 * 109.46035 * 178.62071 * 13 12 11 46 46 H 1.00907 * 110.99892 * 209.11322 * 16 14 13 47 47 H 1.08999 * 109.46777 * 299.99800 * 17 16 14 48 48 H 1.09000 * 109.47541 * 59.99631 * 17 16 14 49 49 H 0.97003 * 119.99949 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99882 * 180.02562 * 24 23 21 51 51 H 1.09006 * 109.58406 * 353.37631 * 29 10 8 52 52 H 1.09002 * 109.59019 * 113.79619 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2633 -0.7212 7 6 3.1384 0.9184 -2.1954 8 6 4.4668 0.8775 -2.9059 9 8 5.4892 1.1015 -2.2933 10 7 4.5186 0.5908 -4.2218 11 6 3.2887 0.3155 -4.9770 12 6 3.2414 1.2413 -6.1966 13 6 4.5280 1.0752 -7.0085 14 6 5.7305 1.4704 -6.1484 15 1 5.6172 2.5026 -5.8171 16 7 6.9621 1.3407 -6.9385 17 6 7.2121 2.5545 -7.7271 18 6 8.4804 2.3843 -8.5230 19 8 9.1141 1.3533 -8.4409 20 7 8.9105 3.3776 -9.3259 21 6 10.0647 3.2230 -10.0496 22 1 10.6289 2.3050 -9.9765 23 6 10.5079 4.2468 -10.8778 24 7 11.6139 4.0984 -11.5718 25 14 9.5316 5.8343 -11.0047 26 1 10.0108 6.7937 -9.9775 27 1 9.7164 6.4225 -12.3557 28 1 8.0914 5.5489 -10.7818 29 6 5.8061 0.5466 -4.9281 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 2.8828 1.0775 1.9564 34 1 2.6605 2.7674 1.4425 35 1 1.2567 1.8015 1.9563 36 1 3.9931 0.5053 -0.2616 37 1 3.8426 2.2371 -0.6442 38 1 2.5042 1.6765 -2.6549 39 1 2.6546 -0.0554 -2.2723 40 1 3.2872 -0.7234 -5.3066 41 1 2.4216 0.4988 -4.3426 42 1 2.3836 0.9820 -6.8171 43 1 3.1510 2.2756 -5.8649 44 1 4.6298 0.0353 -7.3189 45 1 4.4863 1.7149 -7.8901 46 1 7.7504 1.1254 -6.3465 47 1 6.3771 2.7245 -8.4068 48 1 7.3148 3.4083 -7.0573 49 1 8.4036 4.2020 -9.3918 50 1 11.9235 4.8133 -12.1497 51 1 6.6000 0.8848 -4.2622 52 1 6.0095 -0.4736 -5.2538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207880486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:51 Heat of formation + Delta-G solvation = -149.806364 kcal Electronic energy + Delta-G solvation = -29780.344125 eV Core-core repulsion = 25585.459864 eV Total energy + Delta-G solvation = -4194.884261 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37406 -40.34872 -39.38995 -38.71902 -36.42060 -35.82278 -34.71519 -33.77431 -33.23137 -31.83814 -30.70798 -28.09300 -27.53808 -26.80339 -25.79451 -24.60100 -23.52039 -22.07224 -21.34666 -21.32452 -20.35712 -19.79347 -18.30083 -17.88314 -17.74461 -17.20676 -16.83421 -16.61784 -16.51824 -16.11248 -15.89757 -15.75288 -15.54904 -15.18325 -15.09685 -14.89775 -14.56098 -14.52692 -14.15497 -14.10539 -13.93635 -13.65693 -13.45943 -13.38600 -13.29949 -13.15775 -12.95056 -12.43132 -12.41980 -12.38252 -12.22730 -12.05362 -11.99065 -11.81929 -11.77477 -11.63129 -11.53113 -11.52385 -10.86496 -10.49894 -10.46560 -10.26834 -9.72182 -9.41328 -8.42561 -6.03903 1.29165 1.34670 1.43806 1.59927 1.89050 1.92859 2.22041 2.71750 2.91191 3.13469 3.31608 3.48491 3.77077 3.80031 3.90983 4.03187 4.09226 4.12090 4.15717 4.20946 4.26869 4.35494 4.37723 4.47756 4.49431 4.52311 4.57010 4.65442 4.66627 4.71958 4.78703 4.80305 4.84653 4.94060 4.99164 5.00949 5.05857 5.11284 5.21475 5.22689 5.33357 5.37723 5.48878 5.52147 5.88079 6.00629 6.26918 6.35877 6.40121 6.57693 6.85943 7.14422 7.37228 7.93631 8.75068 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.001743 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.579155 B =16057.812932 C =16242.745471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.088 3.912 4 H 0.083 0.917 5 C -0.176 4.176 6 C -0.101 4.101 7 C -0.125 4.125 8 C 0.507 3.493 9 O -0.592 6.592 10 N -0.608 5.608 11 C 0.100 3.900 12 C -0.126 4.126 13 C -0.110 4.110 14 C 0.082 3.918 15 H 0.048 0.952 16 N -0.677 5.677 17 C 0.065 3.935 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.589 5.589 21 C -0.331 4.331 22 H 0.055 0.945 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.965 3.035 26 H -0.258 1.258 27 H -0.273 1.273 28 H -0.230 1.230 29 C 0.113 3.887 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.343 0.657 47 H 0.116 0.884 48 H 0.072 0.928 49 H 0.390 0.610 50 H 0.280 0.720 51 H 0.067 0.933 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.163 -1.099 21.259 39.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.030 3.970 4 H 0.101 0.899 5 C -0.233 4.233 6 C -0.139 4.139 7 C -0.165 4.165 8 C 0.297 3.703 9 O -0.473 6.473 10 N -0.341 5.341 11 C -0.021 4.021 12 C -0.165 4.165 13 C -0.148 4.148 14 C -0.028 4.028 15 H 0.066 0.934 16 N -0.309 5.309 17 C -0.067 4.067 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.231 5.231 21 C -0.460 4.460 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.574 5.574 25 Si 0.785 3.215 26 H -0.183 1.183 27 H -0.198 1.198 28 H -0.153 1.153 29 C -0.010 4.010 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.098 0.902 41 H 0.134 0.866 42 H 0.123 0.877 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.162 0.838 47 H 0.134 0.866 48 H 0.090 0.910 49 H 0.225 0.775 50 H 0.089 0.911 51 H 0.085 0.915 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -32.261 -2.110 20.972 38.536 hybrid contribution 0.956 1.410 0.159 1.711 sum -31.305 -0.699 21.131 37.776 Atomic orbital electron populations 1.22952 0.79838 1.03536 1.00906 1.87924 1.21096 1.28445 1.95221 1.22180 0.94157 0.84807 0.95834 0.89875 1.22279 1.02538 1.01899 0.96620 1.21430 0.96274 1.02580 0.93588 1.21677 0.93269 1.06135 0.95393 1.21483 0.92403 0.74829 0.81579 1.90690 1.38453 1.51531 1.66589 1.48207 1.08150 1.69176 1.08542 1.22117 0.85810 1.00301 0.93873 1.21916 0.97801 1.00369 0.96370 1.21575 0.92777 1.02414 0.98032 1.21885 0.90799 0.97938 0.92156 0.93414 1.60146 1.06085 1.35278 1.29432 1.21649 0.95054 0.92684 0.97336 1.20927 0.88605 0.83759 0.83106 1.90550 1.60320 1.30214 1.68727 1.42013 1.23265 1.16720 1.41104 1.19018 1.00993 1.03319 1.22707 0.92727 1.26129 0.97469 1.02728 0.94985 1.69804 1.23547 1.35639 1.28385 0.85358 0.79945 0.77091 0.79086 1.18257 1.19847 1.15344 1.21519 0.86525 1.00265 0.92732 0.93651 0.92463 0.89126 0.93045 0.90769 0.91570 0.92879 0.90485 0.86055 0.86892 0.90190 0.86581 0.87731 0.91147 0.91604 0.91533 0.83821 0.86611 0.91004 0.77457 0.91098 0.91483 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.82 113.37 1.23 1.38 16 2 O -0.41 -5.25 9.88 -148.98 -1.47 -6.72 16 3 C 0.09 0.93 2.72 30.60 0.08 1.01 16 4 H 0.08 0.52 7.79 -2.39 -0.02 0.50 16 5 C -0.18 -1.83 9.53 71.98 0.69 -1.15 16 6 C -0.10 -1.48 4.21 30.60 0.13 -1.35 16 7 C -0.13 -1.51 3.94 29.85 0.12 -1.39 16 8 C 0.51 10.57 7.70 87.66 0.67 11.24 16 9 O -0.59 -18.22 15.39 -3.02 -0.05 -18.27 16 10 N -0.61 -10.96 2.97 -818.81 -2.43 -13.39 16 11 C 0.10 0.97 6.34 86.36 0.55 1.52 16 12 C -0.13 -1.24 6.08 30.67 0.19 -1.05 16 13 C -0.11 -1.90 5.40 30.62 0.17 -1.74 16 14 C 0.08 1.84 2.64 45.01 0.12 1.96 16 15 H 0.05 1.06 7.80 -2.39 -0.02 1.05 16 16 N -0.68 -20.56 5.93 -495.13 -2.94 -23.50 16 17 C 0.07 2.04 5.97 85.56 0.51 2.55 16 18 C 0.45 20.65 7.82 87.66 0.69 21.33 16 19 O -0.61 -34.78 15.78 -3.09 -0.05 -34.83 16 20 N -0.59 -28.20 5.09 -306.99 -1.56 -29.76 16 21 C -0.33 -19.69 10.16 84.04 0.85 -18.83 16 22 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 24 N -0.93 -56.71 13.96 21.66 0.30 -56.41 16 25 Si 0.97 38.92 27.74 68.60 1.90 40.83 16 26 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 27 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 28 H -0.23 -7.76 6.52 99.48 0.65 -7.12 16 29 C 0.11 2.62 5.70 86.38 0.49 3.12 16 30 H 0.04 0.24 7.87 -2.39 -0.02 0.22 16 31 H 0.06 0.19 8.08 -2.39 -0.02 0.17 16 32 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.55 7.87 -2.39 -0.02 0.53 16 36 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 38 H 0.12 0.72 7.70 -2.39 -0.02 0.70 16 39 H 0.11 1.11 7.62 -2.38 -0.02 1.09 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.12 0.44 5.93 -2.39 -0.01 0.43 16 42 H 0.10 0.58 8.14 -2.38 -0.02 0.57 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.19 7.44 -2.38 -0.02 1.17 16 46 H 0.34 11.53 8.06 -89.69 -0.72 10.80 16 47 H 0.12 3.03 7.43 -2.39 -0.02 3.01 16 48 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16 49 H 0.39 15.37 5.76 -92.71 -0.53 14.84 16 50 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 51 H 0.07 1.89 7.01 -2.38 -0.02 1.87 16 52 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -84.76 413.45 0.25 -84.51 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: -0.40 Total: 39.26 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 6.94 Total: 18.28 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -6.63 Total: -123.06 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -1.57 Total: -59.82 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.90 Total: 40.83 kcal Total: -84.76 0.25 -84.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207880486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.294 kcal (2) G-P(sol) polarization free energy of solvation -84.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds