Wall clock time and date at job start Wed Apr 1 2020 01:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00117 * 2 1 4 4 C 1.53002 * 109.47360 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46793 * 60.00317 * 4 3 2 6 6 C 1.52998 * 109.47158 * 300.00803 * 4 3 2 7 7 C 1.50696 * 109.47285 * 180.02562 * 4 3 2 8 8 O 1.21280 * 119.99869 * 0.02562 * 7 4 3 9 9 N 1.34770 * 120.00105 * 180.02562 * 7 4 3 10 10 C 1.46502 * 120.00098 * 180.02562 * 9 7 4 11 11 H 1.08997 * 110.64661 * 31.84773 * 10 9 7 12 12 C 1.54933 * 110.72428 * 268.49812 * 10 9 7 13 13 N 1.48532 * 103.23149 * 204.22981 * 12 10 9 14 14 C 1.46893 * 111.00649 * 159.72149 * 13 12 10 15 15 C 1.50706 * 109.47176 * 52.59955 * 14 13 12 16 16 O 1.21295 * 119.99584 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00020 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99737 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00254 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99943 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00135 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 119.99954 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47152 * 89.99894 * 22 20 18 24 24 H 1.48501 * 109.47252 * 209.99373 * 22 20 18 25 25 H 1.48500 * 109.47362 * 329.99455 * 22 20 18 26 26 C 1.47901 * 105.81903 * 39.20357 * 13 12 10 27 27 C 1.53990 * 107.06033 * 334.67581 * 26 13 12 28 28 H 1.08999 * 110.31179 * 120.13707 * 27 26 13 29 29 C 1.53001 * 110.31126 * 242.30857 * 27 26 13 30 30 H 1.09004 * 109.47185 * 59.99324 * 1 2 3 31 31 H 1.08994 * 109.46962 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47218 * 299.99649 * 1 2 3 33 33 H 1.09007 * 109.46907 * 60.00588 * 3 2 1 34 34 H 1.08998 * 109.47239 * 300.00772 * 3 2 1 35 35 H 1.09000 * 109.47279 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47627 * 299.99994 * 5 4 3 37 37 H 1.09003 * 109.46932 * 60.00285 * 5 4 3 38 38 H 1.09007 * 109.47054 * 299.99357 * 6 4 3 39 39 H 1.08996 * 109.47339 * 59.99584 * 6 4 3 40 40 H 1.09003 * 109.47194 * 180.02562 * 6 4 3 41 41 H 0.97001 * 120.00439 * 359.97438 * 9 7 4 42 42 H 1.08996 * 110.66910 * 85.79147 * 12 10 9 43 43 H 1.09001 * 110.66804 * 322.66320 * 12 10 9 44 44 H 1.09001 * 109.46739 * 292.60364 * 14 13 12 45 45 H 1.09000 * 109.47767 * 172.60623 * 14 13 12 46 46 H 0.96994 * 119.99756 * 0.02562 * 17 15 14 47 47 H 0.96994 * 120.00084 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.91908 * 94.02584 * 26 13 12 49 49 H 1.09002 * 109.91916 * 215.12533 * 26 13 12 50 50 H 1.09007 * 109.47034 * 58.54093 * 29 27 26 51 51 H 1.09001 * 109.47602 * 178.54300 * 29 27 26 52 52 H 1.09002 * 109.47007 * 298.54825 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9874 0.4253 -1.2483 6 6 3.9864 0.4255 1.2501 7 6 4.1484 2.5613 0.0013 8 8 3.4356 3.5425 0.0017 9 7 5.4887 2.7022 0.0014 10 6 6.0846 4.0406 0.0026 11 1 5.4495 4.7436 0.5414 12 6 6.3423 4.5273 -1.4456 13 7 7.4312 5.5239 -1.2806 14 6 8.1385 5.7459 -2.5487 15 6 7.1416 6.0814 -3.6280 16 8 5.9583 6.1313 -3.3662 17 7 7.5648 6.3261 -4.8839 18 6 6.6579 6.6319 -5.8655 19 1 5.6044 6.6771 -5.6323 20 6 7.0943 6.8847 -7.1602 21 7 6.2250 7.1773 -8.1013 22 14 8.9166 6.8072 -7.5635 23 1 9.2735 5.4266 -7.9783 24 1 9.2193 7.7503 -8.6699 25 1 9.7057 7.1830 -6.3630 26 6 8.3402 4.9624 -0.2579 27 6 7.5044 4.0068 0.6136 28 1 7.9125 2.9972 0.5666 29 6 7.4711 4.5005 2.0614 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6887 1.8463 0.8901 34 1 1.6885 1.8464 -0.8899 35 1 5.0740 0.3396 -1.2482 36 1 3.5441 -0.5705 -1.2485 37 1 3.6661 0.9661 -2.1385 38 1 3.6645 0.9665 2.1400 39 1 3.5431 -0.5702 1.2500 40 1 5.0731 0.3398 1.2508 41 1 6.0590 1.9175 0.0014 42 1 5.4497 4.9975 -1.8580 43 1 6.6696 3.7010 -2.0767 44 1 8.6821 4.8422 -2.8245 45 1 8.8409 6.5714 -2.4335 46 1 8.5111 6.2859 -5.0932 47 1 6.5297 7.3541 -9.0050 48 1 9.1485 4.4133 -0.7408 49 1 8.7509 5.7650 0.3548 50 1 7.0497 5.5053 2.0931 51 1 6.8555 3.8292 2.6602 52 1 8.4845 4.5188 2.4624 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207987979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:40 Heat of formation + Delta-G solvation = -139.232059 kcal Electronic energy + Delta-G solvation = -31132.838440 eV Core-core repulsion = 26938.412715 eV Total energy + Delta-G solvation = -4194.425725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67076 -40.75088 -39.50238 -38.73206 -36.18365 -35.99361 -35.38333 -33.81009 -33.50619 -30.23527 -28.77456 -28.30308 -28.25000 -26.76864 -26.57249 -25.48476 -23.76091 -22.25124 -21.57833 -21.33922 -20.33103 -20.14616 -18.22003 -17.85687 -17.72723 -16.95494 -16.88495 -16.79744 -16.43438 -16.32639 -16.12222 -15.69174 -15.52807 -15.14544 -14.79987 -14.73517 -14.56426 -14.41156 -14.24826 -14.12513 -14.01694 -13.69362 -13.35457 -13.18352 -13.11150 -13.02458 -12.87571 -12.81333 -12.51275 -12.43774 -12.42848 -12.17920 -12.09117 -12.00443 -11.84199 -11.77832 -11.65837 -11.49948 -10.81016 -10.70842 -10.35926 -10.28515 -10.04495 -9.33072 -8.43545 -6.05034 1.28299 1.33785 1.43361 1.51651 1.89426 1.91986 2.21358 2.67112 2.85059 3.12297 3.24815 3.48893 3.55706 3.64850 3.75852 3.84369 3.95239 4.10877 4.13404 4.20193 4.35169 4.38512 4.40465 4.43458 4.51232 4.56436 4.57861 4.58865 4.70906 4.72405 4.77956 4.83087 4.87672 4.88777 4.95454 4.98294 5.08547 5.10591 5.22160 5.25051 5.30409 5.36348 5.47745 5.50827 5.84407 5.91497 6.07879 6.08681 6.46063 6.57009 6.86185 7.17643 7.36151 7.94972 8.74447 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010964 B = 0.002806 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.286652 B = 9977.370414 C =11840.677454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.087 3.913 4 C -0.074 4.074 5 C -0.134 4.134 6 C -0.128 4.128 7 C 0.520 3.480 8 O -0.585 6.585 9 N -0.700 5.700 10 C 0.148 3.852 11 H 0.074 0.926 12 C 0.036 3.964 13 N -0.518 5.518 14 C 0.047 3.953 15 C 0.444 3.556 16 O -0.608 6.608 17 N -0.589 5.589 18 C -0.329 4.329 19 H 0.050 0.950 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.229 1.229 26 C 0.038 3.962 27 C -0.094 4.094 28 H 0.111 0.889 29 C -0.136 4.136 30 H 0.038 0.962 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.034 0.966 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.417 0.583 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.085 0.915 45 H 0.124 0.876 46 H 0.390 0.610 47 H 0.280 0.720 48 H 0.072 0.928 49 H 0.097 0.903 50 H 0.045 0.955 51 H 0.060 0.940 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.012 -18.170 22.098 29.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C 0.009 3.991 4 C -0.077 4.077 5 C -0.191 4.191 6 C -0.185 4.185 7 C 0.308 3.692 8 O -0.464 6.464 9 N -0.352 5.352 10 C 0.042 3.958 11 H 0.093 0.907 12 C -0.093 4.093 13 N -0.243 5.243 14 C -0.085 4.085 15 C 0.232 3.768 16 O -0.492 6.492 17 N -0.231 5.231 18 C -0.458 4.458 19 H 0.069 0.931 20 C -0.215 4.215 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.153 1.153 26 C -0.090 4.090 27 C -0.113 4.113 28 H 0.129 0.871 29 C -0.194 4.194 30 H 0.057 0.943 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.255 0.745 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.103 0.897 45 H 0.142 0.858 46 H 0.226 0.774 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.115 0.885 50 H 0.064 0.936 51 H 0.079 0.921 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.594 -17.042 22.232 28.565 hybrid contribution 0.232 -0.073 -1.567 1.586 sum 5.826 -17.115 20.664 27.457 Atomic orbital electron populations 1.22937 0.79588 1.04134 1.00434 1.87751 1.21107 1.26808 1.95505 1.22109 0.92201 0.84509 1.00235 1.20699 0.94264 0.91786 1.00996 1.21807 1.02600 1.00888 0.93849 1.21778 1.02702 1.00681 0.93323 1.20924 0.82812 0.91167 0.74344 1.90733 1.62166 1.42472 1.51075 1.45732 1.06160 1.08917 1.74362 1.21876 0.95288 0.83939 0.94720 0.90739 1.23505 0.96317 0.92985 0.96536 1.64469 1.10008 1.42876 1.06950 1.22123 0.94557 1.03832 0.87942 1.20987 0.90157 0.81859 0.83783 1.90545 1.20310 1.56523 1.81868 1.42000 1.08646 1.64292 1.08149 1.18971 0.90736 1.46751 0.89365 0.93149 1.26170 1.05247 0.95820 0.94254 1.69815 1.37378 1.47377 1.03052 0.85333 0.76350 0.79650 0.79970 1.17957 1.19957 1.15256 1.23188 0.94527 0.97932 0.93317 1.22248 0.91769 1.01062 0.96240 0.87134 1.21795 1.03195 1.00840 0.93529 0.94309 0.87348 0.93401 0.93170 0.94785 0.89962 0.89362 0.94432 0.92596 0.89711 0.89708 0.74517 0.92394 0.94481 0.89688 0.85834 0.77401 0.91097 0.91020 0.88499 0.93575 0.92143 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.64 16 2 O -0.39 -8.11 9.35 -148.98 -1.39 -9.50 16 3 C 0.09 2.09 4.09 71.98 0.29 2.38 16 4 C -0.07 -1.54 0.70 -52.93 -0.04 -1.58 16 5 C -0.13 -2.49 8.22 71.98 0.59 -1.89 16 6 C -0.13 -1.75 8.22 71.98 0.59 -1.16 16 7 C 0.52 14.32 6.48 87.66 0.57 14.89 16 8 O -0.59 -22.60 15.63 -3.03 -0.05 -22.65 16 9 N -0.70 -15.18 4.96 -436.85 -2.17 -17.34 16 10 C 0.15 3.88 2.97 46.20 0.14 4.02 16 11 H 0.07 2.45 7.26 -2.39 -0.02 2.43 16 12 C 0.04 1.25 4.98 86.65 0.43 1.68 16 13 N -0.52 -16.11 5.26 -887.59 -4.67 -20.78 16 14 C 0.05 1.46 5.52 85.56 0.47 1.93 16 15 C 0.44 20.78 7.49 87.66 0.66 21.44 16 16 O -0.61 -35.27 13.10 -3.08 -0.04 -35.31 16 17 N -0.59 -28.44 5.09 -306.98 -1.56 -30.01 16 18 C -0.33 -19.80 10.16 84.04 0.85 -18.94 16 19 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 20 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 21 N -0.94 -57.56 13.96 21.66 0.30 -57.26 16 22 Si 0.97 39.08 27.74 68.60 1.90 40.98 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 26 C 0.04 0.72 6.35 86.44 0.55 1.27 16 27 C -0.09 -1.55 3.32 -9.91 -0.03 -1.58 16 28 H 0.11 1.16 7.75 -2.39 -0.02 1.14 16 29 C -0.14 -1.91 8.89 71.98 0.64 -1.27 16 30 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.05 1.25 8.10 -2.38 -0.02 1.23 16 34 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 35 H 0.08 1.12 7.56 -2.39 -0.02 1.10 16 36 H 0.09 1.46 7.68 -2.39 -0.02 1.44 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.08 1.08 7.68 -2.39 -0.02 1.06 16 40 H 0.08 0.73 7.56 -2.39 -0.02 0.71 16 41 H 0.42 5.63 7.22 -92.71 -0.67 4.96 16 42 H 0.06 2.82 5.97 -2.39 -0.01 2.81 16 43 H 0.04 1.26 8.02 -2.39 -0.02 1.24 16 44 H 0.09 2.11 7.81 -2.39 -0.02 2.09 16 45 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 46 H 0.39 15.40 5.76 -92.71 -0.53 14.87 16 47 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 48 H 0.07 1.04 7.57 -2.39 -0.02 1.02 16 49 H 0.10 1.63 7.69 -2.39 -0.02 1.61 16 50 H 0.05 0.82 8.13 -2.38 -0.02 0.80 16 51 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -88.45 410.45 -0.59 -89.03 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -0.34 Total: 40.46 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 7.43 Total: 22.37 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -8.10 Total: -125.39 kcal Atomic # 8 Polarization: -65.98 SS G_CDS: -1.48 Total: -67.46 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 1.90 Total: 40.98 kcal Total: -88.45 -0.59 -89.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207987979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.198 kcal (2) G-P(sol) polarization free energy of solvation -88.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds