Wall clock time and date at job start Wed Apr 1 2020 01:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 113.99703 * 2 1 4 4 H 1.09004 * 109.47002 * 30.11140 * 3 2 1 5 5 C 1.50691 * 109.47036 * 270.10626 * 3 2 1 6 6 O 1.21283 * 120.00504 * 0.02562 * 5 3 2 7 7 N 1.34783 * 120.00126 * 180.02562 * 5 3 2 8 8 C 1.46500 * 120.00182 * 180.02562 * 7 5 3 9 9 H 1.08998 * 110.27164 * 32.91124 * 8 7 5 10 10 C 1.53992 * 110.30861 * 270.71814 * 8 7 5 11 11 N 1.47907 * 107.05737 * 242.30913 * 10 8 7 12 12 C 1.46898 * 110.99890 * 214.15736 * 11 10 8 13 13 C 1.50702 * 109.46835 * 287.39539 * 12 11 10 14 14 O 1.21292 * 120.00107 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99562 * 180.02562 * 13 12 11 16 16 C 1.37094 * 119.99698 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00259 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00087 * 179.97438 * 16 15 13 19 19 N 1.31414 * 120.00116 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99684 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47163 * 90.00024 * 20 18 16 22 22 H 1.48500 * 109.46849 * 210.00034 * 20 18 16 23 23 H 1.48495 * 109.47085 * 329.99674 * 20 18 16 24 24 C 1.48536 * 105.81633 * 334.67102 * 11 10 8 25 25 C 1.54589 * 110.30678 * 154.99696 * 8 7 5 26 26 H 1.09003 * 110.72559 * 22.34174 * 25 8 7 27 27 C 1.52997 * 110.72851 * 259.22955 * 25 8 7 28 28 C 1.52999 * 109.46731 * 150.10596 * 3 2 1 29 29 C 1.52994 * 109.47455 * 294.65528 * 28 3 2 30 30 C 1.53002 * 109.47382 * 54.66172 * 28 3 2 31 31 H 1.09002 * 109.47399 * 295.13230 * 1 2 3 32 32 H 1.08997 * 109.47621 * 55.13933 * 1 2 3 33 33 H 1.09004 * 109.46748 * 175.13588 * 1 2 3 34 34 H 0.96993 * 119.99560 * 0.02562 * 7 5 3 35 35 H 1.08996 * 109.91573 * 1.65906 * 10 8 7 36 36 H 1.08998 * 109.91737 * 122.95596 * 10 8 7 37 37 H 1.09003 * 109.47041 * 47.39310 * 12 11 10 38 38 H 1.09001 * 109.46671 * 167.39587 * 12 11 10 39 39 H 0.96993 * 120.00147 * 359.97438 * 15 13 12 40 40 H 0.96997 * 119.99532 * 179.97438 * 19 18 16 41 41 H 1.09007 * 110.66628 * 280.76943 * 24 11 10 42 42 H 1.09003 * 110.66274 * 157.64621 * 24 11 10 43 43 H 1.09006 * 109.46602 * 60.00671 * 27 25 8 44 44 H 1.09002 * 109.47298 * 180.02562 * 27 25 8 45 45 H 1.08997 * 109.47183 * 300.00288 * 27 25 8 46 46 H 1.09010 * 109.46705 * 174.65564 * 28 3 2 47 47 H 1.09003 * 109.47308 * 55.90703 * 29 28 3 48 48 H 1.09007 * 109.47360 * 175.90544 * 29 28 3 49 49 H 1.09003 * 109.47699 * 295.90378 * 29 28 3 50 50 H 1.08995 * 109.47120 * 59.99177 * 30 28 3 51 51 H 1.09003 * 109.47477 * 179.97438 * 30 28 3 52 52 H 1.09000 * 109.46531 * 299.99330 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3457 1.9990 0.5156 5 6 2.2120 1.7655 -1.4207 6 8 1.8895 1.0464 -2.3426 7 7 2.7510 2.9760 -1.6671 8 6 2.9467 3.4234 -3.0483 9 1 2.1596 3.0261 -3.6891 10 6 4.3301 2.9831 -3.5618 11 7 5.0909 4.2139 -3.8686 12 6 5.9777 4.0107 -5.0220 13 6 7.1358 3.1355 -4.6171 14 8 7.2144 2.7214 -3.4798 15 7 8.0842 2.8131 -5.5188 16 6 9.1375 2.0165 -5.1506 17 1 9.2075 1.6477 -4.1380 18 6 10.1150 1.6836 -6.0803 19 7 11.1249 0.9204 -5.7273 20 14 9.9935 2.3209 -7.8321 21 1 10.6936 3.6266 -7.9334 22 1 10.6257 1.3471 -8.7580 23 1 8.5648 2.4955 -8.1973 24 6 4.0737 5.2573 -4.1565 25 6 2.9640 4.9678 -3.1146 26 1 3.2217 5.3927 -2.1445 27 6 1.6150 5.5043 -3.5974 28 6 3.3600 1.2628 0.7189 29 6 3.1412 0.9252 2.1951 30 6 4.2461 0.1933 0.0771 31 1 -0.3634 0.4365 0.9304 32 1 -0.3634 0.5874 -0.8432 33 1 -0.3633 -1.0240 -0.0871 34 1 3.0092 3.5510 -0.9298 35 1 4.8465 2.4096 -2.7921 36 1 4.2172 2.3817 -4.4638 37 1 5.4224 3.5292 -5.8269 38 1 6.3533 4.9746 -5.3656 39 1 8.0212 3.1440 -6.4283 40 1 11.8070 0.6878 -6.3764 41 1 3.6876 5.1490 -5.1701 42 1 4.4913 6.2531 -4.0072 43 1 0.8314 5.1904 -2.9077 44 1 1.6500 6.5930 -3.6369 45 1 1.4026 5.1116 -4.5917 46 1 3.8464 2.2349 0.6367 47 1 2.5903 -0.0119 2.2758 48 1 4.1064 0.8231 2.6914 49 1 2.5712 1.7239 2.6699 50 1 4.4019 0.4338 -0.9745 51 1 5.2080 0.1631 0.5890 52 1 3.7597 -0.7787 0.1593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208500846.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:52 Heat of formation + Delta-G solvation = -111.705640 kcal Electronic energy + Delta-G solvation = -31406.788477 eV Core-core repulsion = 27213.556387 eV Total energy + Delta-G solvation = -4193.232090 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.58309 -39.34136 -38.05885 -37.30408 -35.19323 -34.40170 -33.81205 -32.66579 -31.61340 -29.41909 -28.11751 -27.35883 -27.15008 -26.15762 -25.23105 -23.69624 -21.73716 -20.94819 -20.70189 -19.83796 -19.25635 -18.18483 -17.62892 -17.15926 -16.47775 -15.95800 -15.84753 -15.30785 -15.15466 -14.84885 -14.61234 -14.53770 -14.12362 -14.04061 -13.75491 -13.46554 -13.31592 -13.15965 -13.09614 -12.70590 -12.60087 -12.44389 -12.31659 -12.11243 -12.07559 -11.90236 -11.79901 -11.45383 -11.31161 -11.22237 -11.10181 -10.97643 -10.97041 -10.89992 -10.82735 -10.63215 -10.56813 -9.94010 -9.51969 -9.34621 -9.09849 -8.59928 -8.13988 -8.04408 -6.27158 -3.78186 2.50627 2.95977 3.05209 3.09035 3.17222 3.57646 3.78676 3.96078 4.13616 4.28500 4.49737 4.52743 4.57840 4.66059 4.78558 4.88815 4.92285 5.04866 5.18730 5.19246 5.22522 5.24227 5.28684 5.34150 5.42444 5.46260 5.48645 5.56315 5.62617 5.64346 5.69271 5.71097 5.72194 5.83338 5.88952 5.90016 5.96429 6.00666 6.03636 6.17097 6.24864 6.43649 6.55666 6.79678 7.04762 7.09162 7.42107 7.62528 8.15713 8.18604 8.64779 8.99724 9.46837 9.88511 10.86199 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.002914 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.409810 B = 9604.993804 C =11126.258698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.351 6.351 3 C 0.079 3.921 4 H 0.084 0.916 5 C 0.493 3.507 6 O -0.525 6.525 7 N -0.716 5.716 8 C 0.139 3.861 9 H 0.094 0.906 10 C 0.034 3.966 11 N -0.489 5.489 12 C 0.033 3.967 13 C 0.454 3.546 14 O -0.557 6.557 15 N -0.594 5.594 16 C -0.302 4.302 17 H 0.119 0.881 18 C 0.041 3.959 19 N -0.883 5.883 20 Si 0.879 3.121 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.037 3.963 25 C -0.100 4.100 26 H 0.090 0.910 27 C -0.142 4.142 28 C -0.087 4.087 29 C -0.145 4.145 30 C -0.146 4.146 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.400 0.600 35 H 0.098 0.902 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.369 0.631 40 H 0.273 0.727 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.901 8.483 9.419 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.017 3.983 4 H 0.102 0.898 5 C 0.278 3.722 6 O -0.400 6.400 7 N -0.370 5.370 8 C 0.033 3.967 9 H 0.112 0.888 10 C -0.095 4.095 11 N -0.213 5.213 12 C -0.099 4.099 13 C 0.240 3.760 14 O -0.438 6.438 15 N -0.234 5.234 16 C -0.431 4.431 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.523 5.523 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.091 4.091 25 C -0.119 4.119 26 H 0.108 0.892 27 C -0.200 4.200 28 C -0.106 4.106 29 C -0.202 4.202 30 C -0.203 4.203 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.235 0.765 35 H 0.116 0.884 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.202 0.798 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.104 0.896 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.436 7.495 9.904 25.645 hybrid contribution -0.380 0.687 -2.024 2.171 sum -22.817 8.181 7.880 25.488 Atomic orbital electron populations 1.22836 0.80987 1.03210 0.99650 1.88014 1.19656 1.24758 1.94297 1.22135 0.97203 0.86839 0.92123 0.89837 1.21370 0.77230 0.81316 0.92283 1.90717 1.49839 1.53512 1.45944 1.46086 1.63984 1.18411 1.08483 1.21959 0.97780 0.93699 0.83252 0.88828 1.23323 0.91989 0.92507 1.01645 1.64495 1.15845 1.05878 1.35111 1.22129 0.95143 1.00632 0.92014 1.19614 0.84517 0.85401 0.86502 1.90550 1.77380 1.56309 1.19539 1.42203 1.23088 1.47184 1.10890 1.19416 0.98476 1.24867 1.00332 0.86321 1.25027 0.95752 0.97088 0.98340 1.69623 1.11623 1.35806 1.35280 0.86678 0.78341 0.79567 0.84835 1.19643 1.20231 1.19567 1.23336 0.91611 0.97263 0.96911 1.22331 0.95318 0.93904 1.00353 0.89206 1.21775 0.95751 1.01115 1.01319 1.21248 0.92549 1.01209 0.95578 1.21810 1.02222 1.01974 0.94208 1.21752 0.98819 0.98823 1.00917 0.94165 0.93786 0.89351 0.76488 0.88409 0.93543 0.93050 0.89121 0.79806 0.91676 0.93541 0.89596 0.92459 0.92063 0.92433 0.89562 0.91752 0.91924 0.92924 0.92359 0.92130 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.75 101.05 1.09 1.35 16 2 O -0.35 -4.19 8.48 -55.14 -0.47 -4.66 16 3 C 0.08 0.82 2.20 -27.89 -0.06 0.76 16 4 H 0.08 0.63 7.83 -51.93 -0.41 0.22 16 5 C 0.49 6.41 6.17 -10.99 -0.07 6.34 16 6 O -0.53 -9.07 16.12 -14.35 -0.23 -9.30 16 7 N -0.72 -7.92 4.87 -52.50 -0.26 -8.18 16 8 C 0.14 1.70 2.92 -66.58 -0.19 1.50 16 9 H 0.09 1.24 7.26 -51.93 -0.38 0.86 16 10 C 0.03 0.55 5.66 -2.75 -0.02 0.54 16 11 N -0.49 -7.69 4.91 -231.88 -1.14 -8.83 16 12 C 0.03 0.56 5.27 -4.98 -0.03 0.53 16 13 C 0.45 10.53 7.61 -10.98 -0.08 10.44 16 14 O -0.56 -15.09 14.87 5.55 0.08 -15.01 16 15 N -0.59 -14.44 5.09 -10.96 -0.06 -14.50 16 16 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 17 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 18 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 19 N -0.88 -26.22 13.96 55.50 0.77 -25.44 16 20 Si 0.88 19.72 27.74 -169.99 -4.71 15.01 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 24 C 0.04 0.41 5.96 -1.89 -0.01 0.40 16 25 C -0.10 -0.95 3.37 -88.76 -0.30 -1.25 16 26 H 0.09 0.79 7.75 -51.93 -0.40 0.39 16 27 C -0.14 -1.06 9.16 37.16 0.34 -0.72 16 28 C -0.09 -0.87 2.70 -90.62 -0.25 -1.11 16 29 C -0.14 -1.18 9.14 37.15 0.34 -0.84 16 30 C -0.15 -1.90 8.81 37.16 0.33 -1.57 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.40 3.41 7.73 -40.82 -0.32 3.09 16 35 H 0.10 1.91 7.31 -51.93 -0.38 1.53 16 36 H 0.05 0.81 7.52 -51.93 -0.39 0.42 16 37 H 0.05 0.80 7.73 -51.93 -0.40 0.39 16 38 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 39 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.05 0.48 7.89 -51.92 -0.41 0.07 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.45 8.10 -51.93 -0.42 0.02 16 46 H 0.09 0.77 7.42 -51.92 -0.39 0.39 16 47 H 0.06 0.56 7.73 -51.93 -0.40 0.16 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.06 0.92 7.39 -51.93 -0.38 0.54 16 51 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.06 0.88 7.55 -51.93 -0.39 0.48 16 LS Contribution 414.18 15.07 6.24 6.24 Total: -1.00 -36.02 414.18 -8.00 -44.03 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -9.08 Total: 12.07 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 0.84 Total: 8.56 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.68 Total: -56.95 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.62 Total: -28.96 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.71 Total: 15.01 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.02 -8.00 -44.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208500846.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.678 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds