Wall clock time and date at job start Wed Apr 1 2020 01:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 113.99703 * 2 1 4 4 H 1.09004 * 109.47002 * 30.11140 * 3 2 1 5 5 C 1.50691 * 109.47036 * 270.10626 * 3 2 1 6 6 O 1.21283 * 120.00504 * 0.02562 * 5 3 2 7 7 N 1.34783 * 120.00126 * 180.02562 * 5 3 2 8 8 C 1.46500 * 120.00182 * 180.02562 * 7 5 3 9 9 H 1.08998 * 110.27164 * 32.91124 * 8 7 5 10 10 C 1.53992 * 110.30861 * 270.71814 * 8 7 5 11 11 N 1.47907 * 107.05737 * 242.30913 * 10 8 7 12 12 C 1.46898 * 110.99890 * 214.15736 * 11 10 8 13 13 C 1.50702 * 109.46835 * 287.39539 * 12 11 10 14 14 O 1.21292 * 120.00107 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99562 * 180.02562 * 13 12 11 16 16 C 1.37094 * 119.99698 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00259 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00087 * 179.97438 * 16 15 13 19 19 N 1.31414 * 120.00116 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99684 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47163 * 90.00024 * 20 18 16 22 22 H 1.48500 * 109.46849 * 210.00034 * 20 18 16 23 23 H 1.48495 * 109.47085 * 329.99674 * 20 18 16 24 24 C 1.48536 * 105.81633 * 334.67102 * 11 10 8 25 25 C 1.54589 * 110.30678 * 154.99696 * 8 7 5 26 26 H 1.09003 * 110.72559 * 22.34174 * 25 8 7 27 27 C 1.52997 * 110.72851 * 259.22955 * 25 8 7 28 28 C 1.52999 * 109.46731 * 150.10596 * 3 2 1 29 29 C 1.52994 * 109.47455 * 294.65528 * 28 3 2 30 30 C 1.53002 * 109.47382 * 54.66172 * 28 3 2 31 31 H 1.09002 * 109.47399 * 295.13230 * 1 2 3 32 32 H 1.08997 * 109.47621 * 55.13933 * 1 2 3 33 33 H 1.09004 * 109.46748 * 175.13588 * 1 2 3 34 34 H 0.96993 * 119.99560 * 0.02562 * 7 5 3 35 35 H 1.08996 * 109.91573 * 1.65906 * 10 8 7 36 36 H 1.08998 * 109.91737 * 122.95596 * 10 8 7 37 37 H 1.09003 * 109.47041 * 47.39310 * 12 11 10 38 38 H 1.09001 * 109.46671 * 167.39587 * 12 11 10 39 39 H 0.96993 * 120.00147 * 359.97438 * 15 13 12 40 40 H 0.96997 * 119.99532 * 179.97438 * 19 18 16 41 41 H 1.09007 * 110.66628 * 280.76943 * 24 11 10 42 42 H 1.09003 * 110.66274 * 157.64621 * 24 11 10 43 43 H 1.09006 * 109.46602 * 60.00671 * 27 25 8 44 44 H 1.09002 * 109.47298 * 180.02562 * 27 25 8 45 45 H 1.08997 * 109.47183 * 300.00288 * 27 25 8 46 46 H 1.09010 * 109.46705 * 174.65564 * 28 3 2 47 47 H 1.09003 * 109.47308 * 55.90703 * 29 28 3 48 48 H 1.09007 * 109.47360 * 175.90544 * 29 28 3 49 49 H 1.09003 * 109.47699 * 295.90378 * 29 28 3 50 50 H 1.08995 * 109.47120 * 59.99177 * 30 28 3 51 51 H 1.09003 * 109.47477 * 179.97438 * 30 28 3 52 52 H 1.09000 * 109.46531 * 299.99330 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3457 1.9990 0.5156 5 6 2.2120 1.7655 -1.4207 6 8 1.8895 1.0464 -2.3426 7 7 2.7510 2.9760 -1.6671 8 6 2.9467 3.4234 -3.0483 9 1 2.1596 3.0261 -3.6891 10 6 4.3301 2.9831 -3.5618 11 7 5.0909 4.2139 -3.8686 12 6 5.9777 4.0107 -5.0220 13 6 7.1358 3.1355 -4.6171 14 8 7.2144 2.7214 -3.4798 15 7 8.0842 2.8131 -5.5188 16 6 9.1375 2.0165 -5.1506 17 1 9.2075 1.6477 -4.1380 18 6 10.1150 1.6836 -6.0803 19 7 11.1249 0.9204 -5.7273 20 14 9.9935 2.3209 -7.8321 21 1 10.6936 3.6266 -7.9334 22 1 10.6257 1.3471 -8.7580 23 1 8.5648 2.4955 -8.1973 24 6 4.0737 5.2573 -4.1565 25 6 2.9640 4.9678 -3.1146 26 1 3.2217 5.3927 -2.1445 27 6 1.6150 5.5043 -3.5974 28 6 3.3600 1.2628 0.7189 29 6 3.1412 0.9252 2.1951 30 6 4.2461 0.1933 0.0771 31 1 -0.3634 0.4365 0.9304 32 1 -0.3634 0.5874 -0.8432 33 1 -0.3633 -1.0240 -0.0871 34 1 3.0092 3.5510 -0.9298 35 1 4.8465 2.4096 -2.7921 36 1 4.2172 2.3817 -4.4638 37 1 5.4224 3.5292 -5.8269 38 1 6.3533 4.9746 -5.3656 39 1 8.0212 3.1440 -6.4283 40 1 11.8070 0.6878 -6.3764 41 1 3.6876 5.1490 -5.1701 42 1 4.4913 6.2531 -4.0072 43 1 0.8314 5.1904 -2.9077 44 1 1.6500 6.5930 -3.6369 45 1 1.4026 5.1116 -4.5917 46 1 3.8464 2.2349 0.6367 47 1 2.5903 -0.0119 2.2758 48 1 4.1064 0.8231 2.6914 49 1 2.5712 1.7239 2.6699 50 1 4.4019 0.4338 -0.9745 51 1 5.2080 0.1631 0.5890 52 1 3.7597 -0.7787 0.1593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208500846.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:51 Heat of formation + Delta-G solvation = -140.694514 kcal Electronic energy + Delta-G solvation = -31408.045529 eV Core-core repulsion = 27213.556387 eV Total energy + Delta-G solvation = -4194.489142 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.60514 -40.63650 -39.58108 -38.36912 -36.18362 -35.99476 -35.30375 -33.79594 -33.57773 -30.51430 -29.25687 -28.34277 -28.09348 -26.99291 -26.71240 -25.09485 -22.85475 -21.94451 -21.72890 -21.17951 -20.75067 -20.12026 -18.57203 -18.11564 -17.69308 -17.33050 -16.95266 -16.80892 -16.37984 -16.23239 -15.79592 -15.57658 -15.38178 -15.11648 -14.91919 -14.78173 -14.50675 -14.43554 -14.16416 -14.11051 -13.96556 -13.43388 -13.41982 -13.31801 -13.09571 -12.99008 -12.97910 -12.57950 -12.51288 -12.43034 -12.29177 -12.17410 -12.00801 -11.88087 -11.81270 -11.73672 -11.66342 -11.52110 -11.50790 -10.44324 -10.31816 -10.25662 -10.13361 -9.36785 -8.42806 -6.03504 1.27798 1.33538 1.42226 1.48798 1.95043 2.04878 2.21270 2.62844 2.79178 3.11294 3.19260 3.50131 3.58922 3.66526 3.69670 3.85806 3.98460 4.08798 4.11523 4.21611 4.29400 4.32851 4.36406 4.44107 4.45892 4.54155 4.57225 4.62033 4.65576 4.78125 4.82319 4.82704 4.84327 4.89073 4.94352 5.01237 5.06073 5.12905 5.20142 5.31576 5.35153 5.43662 5.50423 5.52103 5.80651 5.90135 6.00532 6.03728 6.51396 6.58601 6.87205 7.19007 7.38428 7.96475 8.75210 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.002914 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.409810 B = 9604.993804 C =11126.258698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.377 6.377 3 C 0.083 3.917 4 H 0.125 0.875 5 C 0.488 3.512 6 O -0.576 6.576 7 N -0.704 5.704 8 C 0.145 3.855 9 H 0.084 0.916 10 C 0.039 3.961 11 N -0.509 5.509 12 C 0.044 3.956 13 C 0.450 3.550 14 O -0.606 6.606 15 N -0.594 5.594 16 C -0.327 4.327 17 H 0.053 0.947 18 C -0.016 4.016 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.253 1.253 22 H -0.275 1.275 23 H -0.234 1.234 24 C 0.037 3.963 25 C -0.086 4.086 26 H 0.103 0.897 27 C -0.135 4.135 28 C -0.084 4.084 29 C -0.138 4.138 30 C -0.143 4.143 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.093 0.907 34 H 0.415 0.585 35 H 0.050 0.950 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.129 0.871 39 H 0.389 0.611 40 H 0.279 0.721 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.098 0.902 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.018 0.982 51 H 0.060 0.940 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.486 12.202 8.447 29.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C 0.021 3.979 4 H 0.142 0.858 5 C 0.275 3.725 6 O -0.455 6.455 7 N -0.358 5.358 8 C 0.039 3.961 9 H 0.102 0.898 10 C -0.091 4.091 11 N -0.233 5.233 12 C -0.088 4.088 13 C 0.237 3.763 14 O -0.489 6.489 15 N -0.236 5.236 16 C -0.456 4.456 17 H 0.071 0.929 18 C -0.215 4.215 19 N -0.577 5.577 20 Si 0.786 3.214 21 H -0.177 1.177 22 H -0.200 1.200 23 H -0.158 1.158 24 C -0.090 4.090 25 C -0.105 4.105 26 H 0.121 0.879 27 C -0.193 4.193 28 C -0.103 4.103 29 C -0.195 4.195 30 C -0.201 4.201 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.252 0.748 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.146 0.854 39 H 0.224 0.776 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.037 0.963 51 H 0.079 0.921 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.046 11.266 8.960 28.888 hybrid contribution 0.462 -0.552 -1.591 1.746 sum -24.584 10.714 7.369 27.811 Atomic orbital electron populations 1.22998 0.79527 1.03779 1.00763 1.87986 1.21425 1.25784 1.94274 1.22255 0.97999 0.87221 0.90398 0.85770 1.22020 0.76271 0.81105 0.93133 1.90686 1.52212 1.54910 1.47681 1.46003 1.62942 1.18161 1.08687 1.21854 0.94768 0.95993 0.83506 0.89757 1.23139 0.93923 0.92577 0.99441 1.64399 1.17308 1.06404 1.35210 1.22065 0.92934 1.00893 0.92892 1.20945 0.85230 0.84564 0.85541 1.90534 1.78577 1.57913 1.21898 1.42035 1.22411 1.47068 1.12124 1.18978 1.01241 1.27107 0.98307 0.92923 1.26126 0.94325 0.96607 1.04403 1.69810 1.12782 1.37291 1.37780 0.85354 0.80581 0.79220 0.76289 1.17713 1.20033 1.15770 1.23518 0.90769 0.96382 0.98302 1.22331 0.96295 0.91102 1.00816 0.87883 1.21739 0.94124 1.02257 1.01184 1.21278 0.91804 1.00418 0.96754 1.21763 1.02687 1.02700 0.92390 1.21710 0.99770 0.99849 0.98752 0.91117 0.94775 0.88901 0.74770 0.93104 0.95764 0.90813 0.85354 0.77570 0.91148 0.91921 0.87484 0.91985 0.89988 0.92647 0.88366 0.92343 0.91856 0.90126 0.96319 0.92104 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.75 113.37 1.22 1.64 16 2 O -0.38 -8.99 8.48 -129.94 -1.10 -10.09 16 3 C 0.08 1.65 2.20 29.84 0.07 1.72 16 4 H 0.12 1.47 7.83 -2.38 -0.02 1.45 16 5 C 0.49 12.97 6.17 87.65 0.54 13.51 16 6 O -0.58 -21.01 16.12 16.00 0.26 -20.75 16 7 N -0.70 -15.40 4.87 -438.39 -2.13 -17.53 16 8 C 0.14 3.49 2.92 45.87 0.13 3.62 16 9 H 0.08 2.23 7.26 -2.39 -0.02 2.21 16 10 C 0.04 1.30 5.66 86.44 0.49 1.79 16 11 N -0.51 -15.45 4.91 -887.53 -4.36 -19.81 16 12 C 0.04 1.41 5.27 85.56 0.45 1.86 16 13 C 0.45 21.31 7.61 87.66 0.67 21.98 16 14 O -0.61 -34.98 14.87 -3.07 -0.05 -35.03 16 15 N -0.59 -29.23 5.09 -306.98 -1.56 -30.79 16 16 C -0.33 -19.84 10.16 84.04 0.85 -18.99 16 17 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 18 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 19 N -0.94 -57.92 13.96 21.66 0.30 -57.62 16 20 Si 0.97 39.96 27.74 68.60 1.90 41.87 16 21 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.23 -8.27 6.52 99.48 0.65 -7.62 16 24 C 0.04 0.70 5.96 86.65 0.52 1.22 16 25 C -0.09 -1.39 3.37 -9.59 -0.03 -1.42 16 26 H 0.10 1.43 7.75 -2.39 -0.02 1.41 16 27 C -0.14 -1.51 9.16 71.98 0.66 -0.85 16 28 C -0.08 -1.65 2.70 -10.80 -0.03 -1.68 16 29 C -0.14 -2.00 9.14 71.98 0.66 -1.34 16 30 C -0.14 -4.06 8.81 71.98 0.63 -3.43 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.03 0.63 8.12 -2.39 -0.02 0.61 16 33 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.41 6.47 7.73 -92.71 -0.72 5.76 16 35 H 0.05 2.17 7.31 -2.39 -0.02 2.15 16 36 H 0.02 0.89 7.52 -2.39 -0.02 0.87 16 37 H 0.07 2.10 7.73 -2.39 -0.02 2.08 16 38 H 0.13 3.22 8.08 -2.39 -0.02 3.20 16 39 H 0.39 15.84 5.76 -92.71 -0.53 15.31 16 40 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 41 H 0.06 1.03 7.89 -2.38 -0.02 1.01 16 42 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.05 0.67 8.10 -2.39 -0.02 0.65 16 46 H 0.10 1.68 7.42 -2.38 -0.02 1.66 16 47 H 0.06 0.93 7.73 -2.39 -0.02 0.92 16 48 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.02 0.64 7.39 -2.39 -0.02 0.62 16 51 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 52 H 0.06 1.68 7.55 -2.39 -0.02 1.66 16 Total: -1.00 -89.42 414.18 0.16 -89.26 By element: Atomic # 1 Polarization: 41.71 SS G_CDS: -0.39 Total: 41.32 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 7.29 Total: 19.18 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -7.75 Total: -125.75 kcal Atomic # 8 Polarization: -64.98 SS G_CDS: -0.89 Total: -65.87 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.90 Total: 41.87 kcal Total: -89.42 0.16 -89.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208500846.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.439 kcal (2) G-P(sol) polarization free energy of solvation -89.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds