Wall clock time and date at job start Wed Apr 1 2020 01:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00269 * 2 1 4 4 H 1.09003 * 109.47210 * 9.64783 * 3 2 1 5 5 C 1.50697 * 109.47517 * 129.64866 * 3 2 1 6 6 O 1.21287 * 119.99881 * 3.49194 * 5 3 2 7 7 N 1.34772 * 120.00559 * 183.49688 * 5 3 2 8 8 C 1.46500 * 120.00431 * 174.64003 * 7 5 3 9 9 H 1.08998 * 110.36646 * 32.81569 * 8 7 5 10 10 C 1.54378 * 110.32027 * 270.63257 * 8 7 5 11 11 N 1.48558 * 104.59400 * 264.95513 * 10 8 7 12 12 C 1.46901 * 111.00078 * 200.96292 * 11 10 8 13 13 C 1.50706 * 109.47229 * 290.12841 * 12 11 10 14 14 O 1.21297 * 119.99479 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00057 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99540 * 180.02562 * 15 13 12 17 17 H 1.07991 * 119.99974 * 359.97438 * 16 15 13 18 18 C 1.38951 * 119.99655 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00061 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99835 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47503 * 89.99653 * 20 18 16 22 22 H 1.48508 * 109.46808 * 209.99798 * 20 18 16 23 23 H 1.48493 * 109.47022 * 329.99043 * 20 18 16 24 24 C 1.48560 * 104.22362 * 320.51644 * 11 10 8 25 25 C 1.54257 * 110.32400 * 154.99416 * 8 7 5 26 26 H 1.09005 * 110.32725 * 359.89806 * 25 8 7 27 27 C 1.52993 * 110.32760 * 237.78906 * 25 8 7 28 28 C 1.53000 * 109.47175 * 249.65411 * 3 2 1 29 29 C 1.53008 * 109.46776 * 302.62276 * 28 3 2 30 30 C 1.52989 * 109.47528 * 62.62322 * 28 3 2 31 31 H 1.08998 * 109.47241 * 184.63158 * 1 2 3 32 32 H 1.09000 * 109.46846 * 304.63903 * 1 2 3 33 33 H 1.09005 * 109.46619 * 64.63779 * 1 2 3 34 34 H 0.97004 * 119.99594 * 354.63212 * 7 5 3 35 35 H 1.08997 * 110.41172 * 23.73593 * 10 8 7 36 36 H 1.09003 * 110.40820 * 146.17882 * 10 8 7 37 37 H 1.09000 * 109.47157 * 50.12752 * 12 11 10 38 38 H 1.09001 * 109.47538 * 170.12487 * 12 11 10 39 39 H 0.96995 * 119.99863 * 359.97438 * 15 13 12 40 40 H 0.96999 * 120.00237 * 180.02562 * 19 18 16 41 41 H 1.09001 * 110.41738 * 280.70389 * 24 11 10 42 42 H 1.08999 * 110.41011 * 158.25804 * 24 11 10 43 43 H 1.09001 * 109.46888 * 60.00015 * 27 25 8 44 44 H 1.08996 * 109.47545 * 179.97438 * 27 25 8 45 45 H 1.09002 * 109.47344 * 300.00404 * 27 25 8 46 46 H 1.08996 * 109.47020 * 182.62994 * 28 3 2 47 47 H 1.09000 * 109.47105 * 184.17946 * 29 28 3 48 48 H 1.09000 * 109.47024 * 304.18464 * 29 28 3 49 49 H 1.09004 * 109.46697 * 64.17778 * 29 28 3 50 50 H 1.08996 * 109.47215 * 57.83692 * 30 28 3 51 51 H 1.08997 * 109.47456 * 177.83928 * 30 28 3 52 52 H 1.09001 * 109.47508 * 297.83989 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2326 2.0495 0.1722 5 6 3.0428 1.3956 1.0939 6 8 3.3050 0.4182 1.7625 7 7 3.6749 2.5624 1.3296 8 6 4.5912 2.6826 2.4663 9 1 5.0939 1.7332 2.6504 10 6 3.8248 3.1369 3.7270 11 7 3.9928 4.6127 3.7557 12 6 3.7660 5.1421 5.1071 13 6 2.3044 5.0236 5.4544 14 8 1.5279 4.5454 4.6545 15 7 1.8600 5.4487 6.6536 16 6 0.5303 5.3403 6.9697 17 1 -0.1610 4.9146 6.2575 18 6 0.0721 5.7792 8.2059 19 7 0.9132 6.2976 9.0722 20 14 -1.7395 5.6308 8.6368 21 1 -1.9876 4.3198 9.2884 22 1 -2.1183 6.7252 9.5664 23 1 -2.5526 5.7299 7.3982 24 6 5.3993 4.8283 3.3286 25 6 5.6270 3.7953 2.2042 26 1 5.4548 4.2508 1.2289 27 6 7.0463 3.2293 2.2821 28 6 2.6759 1.5673 -1.3525 29 6 3.7226 0.4847 -1.6239 30 6 1.6166 1.5406 -2.4560 31 1 -0.3633 -1.0243 0.0830 32 1 -0.3633 0.5841 0.8455 33 1 -0.3633 0.4402 -0.9287 34 1 3.5232 3.3225 0.7464 35 1 2.7697 2.8760 3.6451 36 1 4.2604 2.6872 4.6193 37 1 4.3572 4.5728 5.8244 38 1 4.0638 6.1901 5.1415 39 1 2.4810 5.8307 7.2933 40 1 0.5934 6.6036 9.9353 41 1 6.0813 4.6434 4.1586 42 1 5.5296 5.8408 2.9467 43 1 7.1671 2.4471 1.5326 44 1 7.7660 4.0260 2.0945 45 1 7.2168 2.8112 3.2742 46 1 3.1594 2.5440 -1.3364 47 1 4.2483 0.7119 -2.5513 48 1 4.4356 0.4540 -0.8000 49 1 3.2292 -0.4832 -1.7136 50 1 0.8505 2.2859 -2.2423 51 1 2.0846 1.7651 -3.4145 52 1 1.1599 0.5517 -2.4975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208500847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:55 Heat of formation + Delta-G solvation = -118.439871 kcal Electronic energy + Delta-G solvation = -31296.192665 eV Core-core repulsion = 27102.668557 eV Total energy + Delta-G solvation = -4193.524108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.46018 -39.26661 -37.96827 -37.30465 -34.98385 -34.28157 -33.75750 -32.60969 -31.20985 -29.34620 -28.13961 -27.42552 -27.20534 -25.96428 -25.15050 -23.83382 -21.77275 -20.92751 -20.50341 -19.82481 -19.07025 -17.83009 -17.47896 -16.94261 -16.59136 -15.85976 -15.70510 -15.38272 -15.15622 -14.70016 -14.56033 -14.47493 -14.14188 -13.94906 -13.73367 -13.69859 -13.18705 -13.15544 -13.03093 -12.63583 -12.51040 -12.35899 -12.29475 -12.05082 -11.81772 -11.76401 -11.51442 -11.47062 -11.38727 -11.22476 -11.19680 -11.00238 -10.96594 -10.89638 -10.79556 -10.38762 -10.21013 -10.19438 -9.48266 -9.31972 -8.93615 -8.49979 -8.02727 -7.93432 -6.40675 -3.81313 2.67173 2.92183 3.18335 3.26713 3.32422 3.82883 3.91967 4.03945 4.26808 4.42522 4.46854 4.51893 4.64721 4.71448 4.90169 4.94983 5.05131 5.07500 5.22731 5.25731 5.26254 5.31185 5.36332 5.40929 5.44326 5.48030 5.52751 5.56604 5.60642 5.65981 5.68558 5.76579 5.78795 5.79537 5.83154 5.91110 5.97868 5.99714 6.09445 6.15814 6.28436 6.38911 6.61313 6.89246 7.10126 7.19748 7.56036 7.56942 8.07314 8.30213 8.63203 9.19420 9.55865 10.07935 10.77256 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.002930 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.912596 B = 9555.205177 C =11568.413010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.353 6.353 3 C 0.074 3.926 4 H 0.091 0.909 5 C 0.511 3.489 6 O -0.523 6.523 7 N -0.712 5.712 8 C 0.146 3.854 9 H 0.096 0.904 10 C 0.027 3.973 11 N -0.484 5.484 12 C 0.034 3.966 13 C 0.445 3.555 14 O -0.578 6.578 15 N -0.565 5.565 16 C -0.297 4.297 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.929 3.071 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.032 3.968 25 C -0.100 4.100 26 H 0.085 0.915 27 C -0.143 4.143 28 C -0.103 4.103 29 C -0.142 4.142 30 C -0.148 4.148 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.400 0.600 35 H 0.102 0.898 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.046 0.954 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.065 0.935 50 H 0.055 0.945 51 H 0.059 0.941 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.365 -5.544 -19.671 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.270 6.270 3 C 0.013 3.987 4 H 0.109 0.891 5 C 0.297 3.703 6 O -0.398 6.398 7 N -0.365 5.365 8 C 0.040 3.960 9 H 0.114 0.886 10 C -0.101 4.101 11 N -0.207 5.207 12 C -0.098 4.098 13 C 0.231 3.769 14 O -0.461 6.461 15 N -0.202 5.202 16 C -0.427 4.427 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.756 3.244 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.097 4.097 25 C -0.120 4.120 26 H 0.104 0.896 27 C -0.200 4.200 28 C -0.122 4.122 29 C -0.199 4.199 30 C -0.205 4.205 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.235 0.765 35 H 0.121 0.879 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.074 0.926 51 H 0.078 0.922 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.680 -6.412 -19.853 22.596 hybrid contribution -0.280 0.586 1.228 1.389 sum 8.399 -5.826 -18.625 21.245 Atomic orbital electron populations 1.22979 0.80735 1.03192 1.00222 1.87988 1.19592 1.24881 1.94570 1.22107 0.95558 0.87500 0.93574 0.89077 1.20627 0.82060 0.83062 0.84599 1.90707 1.63549 1.36090 1.49480 1.45936 1.46177 1.13624 1.30793 1.21805 0.89294 0.98980 0.85899 0.88591 1.23605 1.03054 0.87821 0.95657 1.65165 1.20061 1.11960 1.23545 1.22065 0.96935 1.01092 0.89695 1.19699 0.88969 0.84731 0.83549 1.90499 1.56977 1.49113 1.49554 1.41855 1.09684 1.54779 1.13924 1.19680 0.84326 1.38291 1.00400 0.88001 1.25248 1.00131 0.96912 0.95669 1.69609 1.35125 1.41650 1.08048 0.85869 0.82209 0.77811 0.78474 1.20429 1.20927 1.19436 1.23272 0.90260 0.99457 0.96692 1.22158 0.94698 0.95193 0.99903 0.89644 1.21835 0.95070 1.00924 1.02216 1.21478 0.97152 1.00130 0.93426 1.21736 0.98001 0.99057 1.01137 1.21848 0.98365 1.02379 0.97892 0.89342 0.93476 0.93819 0.76485 0.87947 0.93683 0.93214 0.89236 0.77533 0.91904 0.93578 0.89927 0.92318 0.92124 0.92338 0.90005 0.92743 0.92680 0.91606 0.92576 0.92156 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.45 101.05 1.06 1.31 16 2 O -0.35 -4.60 8.71 -55.12 -0.48 -5.08 16 3 C 0.07 0.86 2.37 -27.88 -0.07 0.80 16 4 H 0.09 0.97 7.59 -51.93 -0.39 0.58 16 5 C 0.51 7.36 5.98 -10.99 -0.07 7.30 16 6 O -0.52 -9.74 16.13 -14.33 -0.23 -9.97 16 7 N -0.71 -8.81 5.00 -52.47 -0.26 -9.08 16 8 C 0.15 1.91 3.10 -66.55 -0.21 1.70 16 9 H 0.10 1.34 7.06 -51.93 -0.37 0.97 16 10 C 0.03 0.46 5.52 -2.18 -0.01 0.45 16 11 N -0.48 -7.83 5.06 -231.40 -1.17 -9.00 16 12 C 0.03 0.61 5.30 -4.97 -0.03 0.58 16 13 C 0.45 10.58 7.58 -10.98 -0.08 10.50 16 14 O -0.58 -15.63 14.42 5.54 0.08 -15.55 16 15 N -0.57 -14.46 5.29 -10.96 -0.06 -14.52 16 16 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 17 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 20 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.03 0.37 6.03 -2.18 -0.01 0.36 16 25 C -0.10 -1.02 3.42 -89.24 -0.30 -1.32 16 26 H 0.09 0.77 7.67 -51.93 -0.40 0.37 16 27 C -0.14 -1.20 8.92 37.15 0.33 -0.86 16 28 C -0.10 -0.90 2.73 -90.62 -0.25 -1.15 16 29 C -0.14 -1.34 8.82 37.16 0.33 -1.02 16 30 C -0.15 -1.08 8.46 37.15 0.31 -0.76 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.04 0.34 7.05 -51.93 -0.37 -0.02 16 34 H 0.40 4.03 7.82 -40.82 -0.32 3.72 16 35 H 0.10 2.14 6.82 -51.93 -0.35 1.78 16 36 H 0.04 0.76 7.82 -51.93 -0.41 0.35 16 37 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 38 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 39 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 46 H 0.08 0.59 7.59 -51.93 -0.39 0.20 16 47 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.05 0.61 7.16 -51.93 -0.37 0.24 16 49 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 50 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 52 H 0.06 0.49 7.07 -51.93 -0.37 0.12 16 LS Contribution 414.00 15.07 6.24 6.24 Total: -1.00 -34.39 414.00 -8.42 -42.82 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -9.00 Total: 12.07 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 0.76 Total: 9.87 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.77 Total: -56.63 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.63 Total: -30.60 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.39 -8.42 -42.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208500847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.624 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds