Wall clock time and date at job start Wed Apr 1 2020 01:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00269 * 2 1 4 4 H 1.09003 * 109.47210 * 9.64783 * 3 2 1 5 5 C 1.50697 * 109.47517 * 129.64866 * 3 2 1 6 6 O 1.21287 * 119.99881 * 3.49194 * 5 3 2 7 7 N 1.34772 * 120.00559 * 183.49688 * 5 3 2 8 8 C 1.46500 * 120.00431 * 174.64003 * 7 5 3 9 9 H 1.08998 * 110.36646 * 32.81569 * 8 7 5 10 10 C 1.54378 * 110.32027 * 270.63257 * 8 7 5 11 11 N 1.48558 * 104.59400 * 264.95513 * 10 8 7 12 12 C 1.46901 * 111.00078 * 200.96292 * 11 10 8 13 13 C 1.50706 * 109.47229 * 290.12841 * 12 11 10 14 14 O 1.21297 * 119.99479 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00057 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99540 * 180.02562 * 15 13 12 17 17 H 1.07991 * 119.99974 * 359.97438 * 16 15 13 18 18 C 1.38951 * 119.99655 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00061 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99835 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47503 * 89.99653 * 20 18 16 22 22 H 1.48508 * 109.46808 * 209.99798 * 20 18 16 23 23 H 1.48493 * 109.47022 * 329.99043 * 20 18 16 24 24 C 1.48560 * 104.22362 * 320.51644 * 11 10 8 25 25 C 1.54257 * 110.32400 * 154.99416 * 8 7 5 26 26 H 1.09005 * 110.32725 * 359.89806 * 25 8 7 27 27 C 1.52993 * 110.32760 * 237.78906 * 25 8 7 28 28 C 1.53000 * 109.47175 * 249.65411 * 3 2 1 29 29 C 1.53008 * 109.46776 * 302.62276 * 28 3 2 30 30 C 1.52989 * 109.47528 * 62.62322 * 28 3 2 31 31 H 1.08998 * 109.47241 * 184.63158 * 1 2 3 32 32 H 1.09000 * 109.46846 * 304.63903 * 1 2 3 33 33 H 1.09005 * 109.46619 * 64.63779 * 1 2 3 34 34 H 0.97004 * 119.99594 * 354.63212 * 7 5 3 35 35 H 1.08997 * 110.41172 * 23.73593 * 10 8 7 36 36 H 1.09003 * 110.40820 * 146.17882 * 10 8 7 37 37 H 1.09000 * 109.47157 * 50.12752 * 12 11 10 38 38 H 1.09001 * 109.47538 * 170.12487 * 12 11 10 39 39 H 0.96995 * 119.99863 * 359.97438 * 15 13 12 40 40 H 0.96999 * 120.00237 * 180.02562 * 19 18 16 41 41 H 1.09001 * 110.41738 * 280.70389 * 24 11 10 42 42 H 1.08999 * 110.41011 * 158.25804 * 24 11 10 43 43 H 1.09001 * 109.46888 * 60.00015 * 27 25 8 44 44 H 1.08996 * 109.47545 * 179.97438 * 27 25 8 45 45 H 1.09002 * 109.47344 * 300.00404 * 27 25 8 46 46 H 1.08996 * 109.47020 * 182.62994 * 28 3 2 47 47 H 1.09000 * 109.47105 * 184.17946 * 29 28 3 48 48 H 1.09000 * 109.47024 * 304.18464 * 29 28 3 49 49 H 1.09004 * 109.46697 * 64.17778 * 29 28 3 50 50 H 1.08996 * 109.47215 * 57.83692 * 30 28 3 51 51 H 1.08997 * 109.47456 * 177.83928 * 30 28 3 52 52 H 1.09001 * 109.47508 * 297.83989 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2326 2.0495 0.1722 5 6 3.0428 1.3956 1.0939 6 8 3.3050 0.4182 1.7625 7 7 3.6749 2.5624 1.3296 8 6 4.5912 2.6826 2.4663 9 1 5.0939 1.7332 2.6504 10 6 3.8248 3.1369 3.7270 11 7 3.9928 4.6127 3.7557 12 6 3.7660 5.1421 5.1071 13 6 2.3044 5.0236 5.4544 14 8 1.5279 4.5454 4.6545 15 7 1.8600 5.4487 6.6536 16 6 0.5303 5.3403 6.9697 17 1 -0.1610 4.9146 6.2575 18 6 0.0721 5.7792 8.2059 19 7 0.9132 6.2976 9.0722 20 14 -1.7395 5.6308 8.6368 21 1 -1.9876 4.3198 9.2884 22 1 -2.1183 6.7252 9.5664 23 1 -2.5526 5.7299 7.3982 24 6 5.3993 4.8283 3.3286 25 6 5.6270 3.7953 2.2042 26 1 5.4548 4.2508 1.2289 27 6 7.0463 3.2293 2.2821 28 6 2.6759 1.5673 -1.3525 29 6 3.7226 0.4847 -1.6239 30 6 1.6166 1.5406 -2.4560 31 1 -0.3633 -1.0243 0.0830 32 1 -0.3633 0.5841 0.8455 33 1 -0.3633 0.4402 -0.9287 34 1 3.5232 3.3225 0.7464 35 1 2.7697 2.8760 3.6451 36 1 4.2604 2.6872 4.6193 37 1 4.3572 4.5728 5.8244 38 1 4.0638 6.1901 5.1415 39 1 2.4810 5.8307 7.2933 40 1 0.5934 6.6036 9.9353 41 1 6.0813 4.6434 4.1586 42 1 5.5296 5.8408 2.9467 43 1 7.1671 2.4471 1.5326 44 1 7.7660 4.0260 2.0945 45 1 7.2168 2.8112 3.2742 46 1 3.1594 2.5440 -1.3364 47 1 4.2483 0.7119 -2.5513 48 1 4.4356 0.4540 -0.8000 49 1 3.2292 -0.4832 -1.7136 50 1 0.8505 2.2859 -2.2423 51 1 2.0846 1.7651 -3.4145 52 1 1.1599 0.5517 -2.4975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208500847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:54 Heat of formation + Delta-G solvation = -144.639843 kcal Electronic energy + Delta-G solvation = -31297.328781 eV Core-core repulsion = 27102.668557 eV Total energy + Delta-G solvation = -4194.660224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55813 -40.55477 -39.51883 -38.49296 -36.07463 -35.82075 -35.18981 -33.66304 -33.24785 -30.44146 -29.27058 -28.48758 -28.01262 -26.92757 -26.68256 -25.17968 -22.93878 -21.91065 -21.58179 -20.85788 -20.76377 -19.86166 -18.51384 -17.97342 -17.71100 -17.42944 -16.75560 -16.66998 -16.41938 -16.34973 -15.84171 -15.69529 -15.40503 -15.26741 -14.89669 -14.78478 -14.47229 -14.23688 -13.91961 -13.82040 -13.56922 -13.44175 -13.33625 -13.25256 -13.00916 -12.96968 -12.93502 -12.58988 -12.53333 -12.43917 -12.29556 -12.21182 -12.14162 -12.01202 -11.84863 -11.71863 -11.67452 -11.49836 -11.17658 -10.36190 -10.33866 -10.06129 -10.00956 -9.40668 -8.48321 -5.96853 1.35641 1.39054 1.51802 1.54474 1.93960 2.04594 2.26720 2.80978 2.94396 3.18017 3.32507 3.54300 3.61983 3.65029 3.69749 3.90849 4.07347 4.16461 4.21469 4.28262 4.30669 4.33688 4.44380 4.45551 4.50410 4.51793 4.58555 4.66563 4.68766 4.78969 4.80628 4.81627 4.83617 4.94478 4.95403 5.00311 5.10795 5.14442 5.20929 5.34413 5.37982 5.38844 5.42804 5.51515 5.78903 5.89310 6.02398 6.07340 6.55312 6.59361 7.11619 7.22313 7.55133 8.11490 8.69316 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.002930 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.912596 B = 9555.205177 C =11568.413010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.379 6.379 3 C 0.074 3.926 4 H 0.099 0.901 5 C 0.505 3.495 6 O -0.575 6.575 7 N -0.700 5.700 8 C 0.150 3.850 9 H 0.085 0.915 10 C 0.030 3.970 11 N -0.497 5.497 12 C 0.045 3.955 13 C 0.440 3.560 14 O -0.616 6.616 15 N -0.576 5.576 16 C -0.332 4.332 17 H 0.076 0.924 18 C -0.013 4.013 19 N -0.921 5.921 20 Si 0.991 3.009 21 H -0.273 1.273 22 H -0.268 1.268 23 H -0.273 1.273 24 C 0.032 3.968 25 C -0.087 4.087 26 H 0.107 0.893 27 C -0.138 4.138 28 C -0.097 4.097 29 C -0.138 4.138 30 C -0.144 4.144 31 H 0.097 0.903 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.414 0.586 35 H 0.052 0.948 36 H 0.035 0.965 37 H 0.066 0.934 38 H 0.117 0.883 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.103 0.897 47 H 0.076 0.924 48 H 0.033 0.967 49 H 0.050 0.950 50 H 0.063 0.937 51 H 0.076 0.924 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.540 -3.997 -21.236 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.296 6.296 3 C 0.012 3.988 4 H 0.117 0.883 5 C 0.292 3.708 6 O -0.454 6.454 7 N -0.354 5.354 8 C 0.044 3.956 9 H 0.103 0.897 10 C -0.099 4.099 11 N -0.222 5.222 12 C -0.086 4.086 13 C 0.228 3.772 14 O -0.502 6.502 15 N -0.213 5.213 16 C -0.461 4.461 17 H 0.094 0.906 18 C -0.213 4.213 19 N -0.562 5.562 20 Si 0.815 3.185 21 H -0.199 1.199 22 H -0.193 1.193 23 H -0.197 1.197 24 C -0.095 4.095 25 C -0.106 4.106 26 H 0.125 0.875 27 C -0.196 4.196 28 C -0.116 4.116 29 C -0.195 4.195 30 C -0.201 4.201 31 H 0.116 0.884 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.251 0.749 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.135 0.865 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.121 0.879 47 H 0.095 0.905 48 H 0.052 0.948 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.095 0.905 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.885 -4.821 -21.434 24.091 hybrid contribution -0.638 0.087 1.714 1.831 sum 9.247 -4.733 -19.720 22.288 Atomic orbital electron populations 1.23124 0.79489 1.03913 1.00956 1.87955 1.21085 1.25880 1.94705 1.22269 0.95060 0.87267 0.94190 0.88315 1.21284 0.82135 0.82746 0.84625 1.90671 1.65325 1.37904 1.51481 1.45873 1.45483 1.13581 1.30423 1.21741 0.89557 0.99619 0.84665 0.89705 1.23425 1.00401 0.88773 0.97337 1.65102 1.23628 1.11074 1.22356 1.21952 0.92355 1.03128 0.91197 1.20802 0.91419 0.82670 0.82331 1.90477 1.58931 1.50226 1.50518 1.41927 1.09057 1.55535 1.14809 1.19622 0.85452 1.40150 1.00923 0.90571 1.26017 1.04256 0.95978 0.94999 1.69667 1.36710 1.41484 1.08337 0.84955 0.77111 0.78290 0.78157 1.19862 1.19300 1.19727 1.23432 0.87461 1.01083 0.97517 1.22155 0.94668 0.93422 1.00354 0.87529 1.21813 0.94012 1.01662 1.02095 1.21516 0.97306 1.00764 0.91987 1.21696 0.97773 0.98690 1.01370 1.21829 0.98106 1.02289 0.97913 0.88440 0.94736 0.91317 0.74906 0.92934 0.94631 0.91625 0.86536 0.77054 0.91294 0.92333 0.87770 0.92029 0.89891 0.92901 0.87913 0.90459 0.94772 0.93132 0.91775 0.90463 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.45 113.37 1.19 1.62 16 2 O -0.38 -10.13 8.71 -129.97 -1.13 -11.26 16 3 C 0.07 1.72 2.37 29.85 0.07 1.79 16 4 H 0.10 2.10 7.59 -2.39 -0.02 2.08 16 5 C 0.51 15.07 5.98 87.66 0.52 15.59 16 6 O -0.58 -22.73 16.13 15.96 0.26 -22.47 16 7 N -0.70 -17.27 5.00 -438.31 -2.19 -19.46 16 8 C 0.15 3.91 3.10 45.89 0.14 4.05 16 9 H 0.08 2.43 7.06 -2.39 -0.02 2.42 16 10 C 0.03 1.04 5.52 86.45 0.48 1.51 16 11 N -0.50 -15.64 5.06 -886.03 -4.48 -20.13 16 12 C 0.05 1.58 5.30 85.56 0.45 2.03 16 13 C 0.44 21.44 7.58 87.66 0.66 22.11 16 14 O -0.62 -34.75 14.42 -3.08 -0.04 -34.80 16 15 N -0.58 -30.17 5.29 -306.98 -1.62 -31.79 16 16 C -0.33 -19.24 9.68 84.04 0.81 -18.42 16 17 H 0.08 4.72 7.16 -2.92 -0.02 4.70 16 18 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 19 N -0.92 -50.38 13.05 21.66 0.28 -50.09 16 20 Si 0.99 43.70 29.55 68.60 2.03 45.73 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.03 0.66 6.03 86.45 0.52 1.19 16 25 C -0.09 -1.53 3.42 -9.90 -0.03 -1.56 16 26 H 0.11 1.48 7.67 -2.38 -0.02 1.47 16 27 C -0.14 -1.90 8.92 71.98 0.64 -1.26 16 28 C -0.10 -1.55 2.73 -10.79 -0.03 -1.57 16 29 C -0.14 -2.49 8.82 71.98 0.63 -1.86 16 30 C -0.14 -1.78 8.46 71.98 0.61 -1.17 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.03 0.77 8.08 -2.39 -0.02 0.75 16 33 H 0.07 1.02 7.05 -2.38 -0.02 1.00 16 34 H 0.41 7.77 7.82 -92.71 -0.72 7.05 16 35 H 0.05 2.34 6.82 -2.39 -0.02 2.33 16 36 H 0.04 1.25 7.82 -2.39 -0.02 1.24 16 37 H 0.07 2.10 7.88 -2.39 -0.02 2.08 16 38 H 0.12 3.46 8.13 -2.39 -0.02 3.44 16 39 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16 40 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 41 H 0.06 1.10 7.68 -2.39 -0.02 1.08 16 42 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 46 H 0.10 1.20 7.59 -2.39 -0.02 1.19 16 47 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.03 0.75 7.16 -2.39 -0.02 0.73 16 49 H 0.05 1.06 7.75 -2.39 -0.02 1.04 16 50 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.05 0.78 7.07 -2.39 -0.02 0.76 16 Total: -1.00 -79.04 414.00 -0.30 -79.33 By element: Atomic # 1 Polarization: 41.67 SS G_CDS: -0.53 Total: 41.13 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 7.14 Total: 23.81 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -8.01 Total: -121.48 kcal Atomic # 8 Polarization: -67.61 SS G_CDS: -0.92 Total: -68.53 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -79.04 -0.30 -79.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208500847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.305 kcal (2) G-P(sol) polarization free energy of solvation -79.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds