Wall clock time and date at job start Wed Apr 1 2020 01:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99753 * 2 1 4 4 C 1.50698 * 109.47527 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99277 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00537 * 179.97438 * 4 3 2 7 7 C 1.46501 * 119.99968 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47243 * 325.00082 * 7 6 4 9 9 C 1.50700 * 109.46757 * 205.00186 * 7 6 4 10 10 O 1.21283 * 119.99923 * 341.01389 * 9 7 6 11 11 N 1.34777 * 119.99579 * 161.02042 * 9 7 6 12 12 C 1.46500 * 119.99677 * 174.96143 * 11 9 7 13 13 H 1.09000 * 110.63994 * 31.85923 * 12 11 9 14 14 C 1.54337 * 110.85466 * 268.69304 * 12 11 9 15 15 N 1.47017 * 107.26505 * 219.67766 * 14 12 11 16 16 C 1.36935 * 125.64837 * 178.84748 * 15 14 12 17 17 H 1.08005 * 120.00541 * 186.25594 * 16 15 14 18 18 C 1.38821 * 119.99837 * 6.26201 * 16 15 14 19 19 N 1.31618 * 119.99852 * 6.85641 * 18 16 15 20 20 Si 1.86798 * 119.99812 * 186.85582 * 18 16 15 21 21 H 1.48501 * 109.47375 * 265.02377 * 20 18 16 22 22 H 1.48501 * 109.47382 * 25.02702 * 20 18 16 23 23 H 1.48504 * 109.47060 * 145.02941 * 20 18 16 24 24 C 1.47428 * 108.70527 * 358.58087 * 15 14 12 25 25 C 1.54900 * 104.83071 * 24.35748 * 24 15 14 26 26 H 1.09001 * 111.00254 * 81.06596 * 25 24 15 27 27 C 1.53001 * 111.00486 * 204.91562 * 25 24 15 28 28 C 1.52999 * 109.46963 * 85.00335 * 7 6 4 29 29 C 1.53002 * 109.47013 * 297.41725 * 28 7 6 30 30 C 1.52993 * 109.47361 * 57.41504 * 28 7 6 31 31 H 1.08996 * 109.47067 * 299.99767 * 1 2 3 32 32 H 1.09003 * 109.47039 * 60.00296 * 1 2 3 33 33 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47585 * 59.99856 * 3 2 1 35 35 H 1.09008 * 109.47093 * 300.00327 * 3 2 1 36 36 H 0.96998 * 119.99849 * 359.97438 * 6 4 3 37 37 H 0.96998 * 120.00123 * 354.96286 * 11 9 7 38 38 H 1.08995 * 109.99139 * 100.19268 * 14 12 11 39 39 H 1.09003 * 109.77221 * 339.02809 * 14 12 11 40 40 H 0.96996 * 119.99553 * 179.97438 * 19 18 16 41 41 H 1.09002 * 110.36727 * 143.19884 * 24 15 14 42 42 H 1.09002 * 110.36241 * 265.51901 * 24 15 14 43 43 H 1.08992 * 109.47005 * 58.54800 * 27 25 24 44 44 H 1.08999 * 109.47064 * 178.55054 * 27 25 24 45 45 H 1.09000 * 109.47216 * 298.54390 * 27 25 24 46 46 H 1.08995 * 109.46771 * 177.41986 * 28 7 6 47 47 H 1.09003 * 109.47380 * 60.00185 * 29 28 7 48 48 H 1.08996 * 109.47034 * 180.02562 * 29 28 7 49 49 H 1.09002 * 109.47353 * 299.99966 * 29 28 7 50 50 H 1.09001 * 109.47349 * 64.73965 * 30 28 7 51 51 H 1.08994 * 109.47444 * 184.74099 * 30 28 7 52 52 H 1.09000 * 109.47439 * 304.74372 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0917 -0.0015 6 7 4.2764 2.2970 -0.0013 7 6 5.7368 2.1813 -0.0013 8 1 6.0326 1.3138 0.5885 9 6 6.3392 3.4257 0.5985 10 8 5.6832 4.4433 0.6699 11 7 7.6070 3.4077 1.0555 12 6 8.2297 4.6434 1.5367 13 1 7.4841 5.3002 1.9848 14 6 8.9744 5.3647 0.3934 15 7 10.2244 5.8975 0.9547 16 6 11.1815 6.5869 0.2591 17 1 12.1129 6.8501 0.7384 18 6 10.9546 6.9476 -1.0620 19 7 9.7723 6.7480 -1.6049 20 14 12.3273 7.7161 -2.0693 21 1 12.2116 9.1956 -2.0161 22 1 13.6406 7.3019 -1.5136 23 1 12.2208 7.2617 -3.4791 24 6 10.2738 5.5723 2.3918 25 6 9.3632 4.3290 2.5485 26 1 9.8940 3.4185 2.2701 27 6 8.8142 4.2273 3.9730 28 6 6.2352 2.0151 -1.4383 29 6 5.6747 0.7182 -2.0256 30 6 5.7650 3.2018 -2.2817 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6886 1.8465 0.8900 35 1 1.6885 1.8464 -0.8900 36 1 3.8592 3.1727 -0.0017 37 1 8.1071 2.5766 1.0658 38 1 8.3636 6.1809 0.0075 39 1 9.1985 4.6571 -0.4049 40 1 9.6138 7.0004 -2.5279 41 1 11.2944 5.3354 2.6923 42 1 9.8867 6.4029 2.9821 43 1 8.2522 5.1303 4.2110 44 1 8.1579 3.3603 4.0484 45 1 9.6415 4.1187 4.6743 46 1 7.3244 1.9750 -1.4427 47 1 4.5855 0.7582 -2.0212 48 1 6.0301 0.5995 -3.0491 49 1 6.0097 -0.1273 -1.4248 50 1 6.2313 4.1160 -1.9145 51 1 6.0473 3.0426 -3.3223 52 1 4.6812 3.2924 -2.2091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209246791.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:48 Heat of formation + Delta-G solvation = -94.710217 kcal Electronic energy + Delta-G solvation = -31579.977399 eV Core-core repulsion = 27387.482287 eV Total energy + Delta-G solvation = -4192.495113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.73055 -39.39636 -38.00013 -37.44328 -35.82791 -34.04916 -33.23963 -32.62464 -30.40885 -29.61285 -28.35943 -27.06002 -26.86910 -25.80627 -25.52516 -23.56909 -21.37960 -20.98830 -20.12203 -19.93291 -19.44646 -17.97829 -17.20136 -16.90228 -16.73241 -16.24628 -16.10979 -15.56115 -15.45183 -14.96319 -14.75614 -14.33257 -13.95497 -13.85985 -13.73037 -13.33522 -13.19733 -13.01848 -12.82133 -12.74278 -12.56188 -12.25839 -12.01154 -11.90767 -11.80635 -11.73482 -11.44968 -11.32723 -11.02140 -10.94119 -10.81218 -10.78717 -10.68007 -10.42600 -10.14500 -10.05606 -9.93300 -9.91474 -9.76981 -9.63599 -9.10461 -8.64416 -8.57840 -6.84896 -5.71307 -3.08065 2.41840 2.49270 2.77027 3.38792 3.41628 3.44755 3.46389 3.83525 4.47374 4.49798 4.70921 4.75922 4.79723 4.83951 4.93727 4.97863 5.02343 5.05668 5.21363 5.28923 5.31025 5.39898 5.45441 5.51979 5.64998 5.72225 5.78570 5.95130 5.96203 5.97608 6.02336 6.09822 6.12317 6.15970 6.28162 6.31037 6.38996 6.45035 6.47589 6.60020 6.62025 6.67752 6.89372 7.34935 7.43725 7.56865 7.75157 7.82951 8.06537 8.23196 8.39217 9.18459 9.79783 10.44705 11.38068 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002737 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.162526 B =10226.025348 C =11321.440202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.043 3.957 4 C 0.516 3.484 5 O -0.516 6.516 6 N -0.707 5.707 7 C 0.136 3.864 8 H 0.107 0.893 9 C 0.515 3.485 10 O -0.536 6.536 11 N -0.706 5.706 12 C 0.120 3.880 13 H 0.091 0.909 14 C 0.170 3.830 15 N -0.604 5.604 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.916 5.916 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.291 1.291 24 C 0.140 3.860 25 C -0.114 4.114 26 H 0.077 0.923 27 C -0.137 4.137 28 C -0.100 4.100 29 C -0.136 4.136 30 C -0.148 4.148 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.411 0.589 37 H 0.398 0.602 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.252 0.748 41 H 0.042 0.958 42 H 0.022 0.978 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.086 0.914 47 H 0.054 0.946 48 H 0.050 0.950 49 H 0.061 0.939 50 H 0.066 0.934 51 H 0.057 0.943 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.962 -11.969 4.530 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.037 4.037 4 C 0.301 3.699 5 O -0.390 6.390 6 N -0.363 5.363 7 C 0.027 3.973 8 H 0.125 0.875 9 C 0.299 3.701 10 O -0.413 6.413 11 N -0.356 5.356 12 C 0.015 3.985 13 H 0.109 0.891 14 C 0.044 3.956 15 N -0.331 5.331 16 C -0.359 4.359 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.563 5.563 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.013 3.987 25 C -0.134 4.134 26 H 0.096 0.904 27 C -0.195 4.195 28 C -0.119 4.119 29 C -0.193 4.193 30 C -0.205 4.205 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.248 0.752 37 H 0.232 0.768 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.076 0.924 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.914 -12.100 4.356 19.692 hybrid contribution 0.541 0.780 -0.664 1.158 sum -14.373 -11.320 3.692 18.664 Atomic orbital electron populations 1.22841 0.80365 1.03292 1.00186 1.88009 1.19768 1.25157 1.95448 1.22217 0.91585 0.86996 1.02885 1.20120 0.88574 0.84513 0.76680 1.90742 1.74331 1.26364 1.47585 1.45586 1.05596 1.09629 1.75498 1.20877 0.80941 0.97365 0.98109 0.87492 1.20325 0.82342 0.89531 0.77852 1.90688 1.60873 1.33520 1.56216 1.45863 1.13442 1.12297 1.63962 1.22566 0.94353 0.85174 0.96365 0.89065 1.21517 0.86820 0.96393 0.90840 1.44408 1.20748 1.64959 1.02961 1.19040 0.94705 1.28447 0.93680 0.90384 1.24831 0.96960 1.01098 0.97519 1.69957 1.20124 1.52676 1.13569 0.86124 0.81155 0.78893 0.79715 1.21636 1.20656 1.21681 1.21585 0.96640 0.92854 0.87571 1.22617 0.96561 1.00031 0.94185 0.90433 1.21691 1.00451 1.01445 0.95885 1.21464 1.01104 0.96938 0.92436 1.21860 1.01227 0.96128 1.00088 1.21820 1.01144 0.97885 0.99641 0.93774 0.93772 0.89097 0.90078 0.90098 0.75204 0.76818 0.91852 0.94689 0.93768 0.93939 0.96048 0.92623 0.93162 0.92710 0.89576 0.92657 0.93055 0.91958 0.91480 0.92422 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.94 10.24 -55.14 -0.56 -4.51 16 3 C 0.04 0.38 6.42 36.00 0.23 0.61 16 4 C 0.52 6.09 6.37 -10.99 -0.07 6.02 16 5 O -0.52 -7.80 13.62 -14.36 -0.20 -7.99 16 6 N -0.71 -8.02 4.01 -54.93 -0.22 -8.24 16 7 C 0.14 1.70 2.38 -69.08 -0.16 1.54 16 8 H 0.11 1.30 7.58 -51.93 -0.39 0.90 16 9 C 0.51 7.78 6.05 -10.99 -0.07 7.72 16 10 O -0.54 -9.70 15.43 5.55 0.09 -9.62 16 11 N -0.71 -10.52 5.11 -52.02 -0.27 -10.78 16 12 C 0.12 2.17 2.82 -66.09 -0.19 1.99 16 13 H 0.09 1.78 7.35 -51.93 -0.38 1.40 16 14 C 0.17 4.03 5.18 -3.06 -0.02 4.01 16 15 N -0.60 -15.07 3.39 -170.07 -0.58 -15.65 16 16 C -0.23 -6.33 10.26 -15.06 -0.15 -6.49 16 17 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 18 C -0.01 -0.21 5.45 -17.43 -0.10 -0.30 16 19 N -0.92 -26.73 10.46 55.49 0.58 -26.15 16 20 Si 0.91 21.97 29.56 -169.99 -5.02 16.94 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C 0.14 2.78 6.70 -2.53 -0.02 2.76 16 25 C -0.11 -1.83 3.27 -88.47 -0.29 -2.12 16 26 H 0.08 1.18 8.01 -51.93 -0.42 0.77 16 27 C -0.14 -1.78 9.29 37.16 0.35 -1.43 16 28 C -0.10 -1.25 2.76 -90.62 -0.25 -1.50 16 29 C -0.14 -1.66 7.75 37.16 0.29 -1.37 16 30 C -0.15 -2.00 8.78 37.15 0.33 -1.67 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.41 4.37 7.71 -40.82 -0.31 4.06 16 37 H 0.40 4.91 8.57 -40.82 -0.35 4.56 16 38 H 0.06 1.77 7.01 -51.93 -0.36 1.40 16 39 H 0.03 0.90 7.78 -51.93 -0.40 0.50 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 43 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.05 0.71 5.70 -51.93 -0.30 0.41 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.79 7.70 -51.93 -0.40 0.39 16 50 H 0.07 1.11 7.39 -51.93 -0.38 0.73 16 51 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.05 0.66 7.37 -51.93 -0.38 0.27 16 LS Contribution 411.66 15.07 6.20 6.20 Total: -1.00 -34.01 411.66 -8.10 -42.12 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -9.12 Total: 6.62 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 0.99 Total: 11.06 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.48 Total: -60.83 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.67 Total: -22.12 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.01 -8.10 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209246791.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.593 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds