Wall clock time and date at job start Wed Apr 1 2020 01:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99985 * 2 1 4 4 C 1.52998 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46892 * 54.99988 * 4 3 2 6 6 C 1.52999 * 109.47249 * 295.00088 * 4 3 2 7 7 C 1.52999 * 109.47404 * 174.99875 * 4 3 2 8 8 C 1.50696 * 109.47219 * 185.00113 * 7 4 3 9 9 O 1.21281 * 120.00466 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99737 * 179.97438 * 8 7 4 11 11 C 1.46505 * 119.99909 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.64360 * 31.84793 * 11 10 8 13 13 C 1.54933 * 110.87436 * 268.59109 * 11 10 8 14 14 N 1.48534 * 103.22824 * 204.15452 * 13 11 10 15 15 C 1.46901 * 111.00172 * 159.71827 * 14 13 11 16 16 C 1.50701 * 109.46921 * 52.60615 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47268 * 89.99721 * 23 21 19 25 25 H 1.48498 * 109.47211 * 209.99980 * 23 21 19 26 26 H 1.48505 * 109.46734 * 329.99774 * 23 21 19 27 27 C 1.47912 * 105.81750 * 39.20906 * 14 13 11 28 28 C 1.53995 * 107.05535 * 334.66922 * 27 14 13 29 29 H 1.08997 * 110.30497 * 120.14229 * 28 27 14 30 30 C 1.53004 * 110.30599 * 242.31066 * 28 27 14 31 31 H 1.08996 * 109.47732 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47601 * 300.00419 * 1 2 3 33 33 H 1.09004 * 109.47062 * 59.99850 * 1 2 3 34 34 H 1.09000 * 109.47127 * 59.99551 * 3 2 1 35 35 H 1.09002 * 109.47165 * 299.99728 * 3 2 1 36 36 H 1.09001 * 109.47092 * 299.99778 * 6 4 3 37 37 H 1.09008 * 109.47168 * 60.00071 * 6 4 3 38 38 H 1.09002 * 109.46971 * 179.97438 * 6 4 3 39 39 H 1.08996 * 109.46713 * 64.99966 * 7 4 3 40 40 H 1.08998 * 109.46790 * 305.00634 * 7 4 3 41 41 H 0.96999 * 120.00543 * 0.02562 * 10 8 7 42 42 H 1.08997 * 110.67236 * 85.72169 * 13 11 10 43 43 H 1.09001 * 110.67169 * 322.59313 * 13 11 10 44 44 H 1.09002 * 109.47401 * 292.60643 * 15 14 13 45 45 H 1.09001 * 109.46874 * 172.60656 * 15 14 13 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.91505 * 94.02357 * 27 14 13 49 49 H 1.08999 * 109.91449 * 215.12087 * 27 14 13 50 50 H 1.09000 * 109.47197 * 58.54946 * 30 28 27 51 51 H 1.09002 * 109.46591 * 178.54888 * 30 28 27 52 52 H 1.08999 * 109.46977 * 298.54058 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5682 -0.8409 6 6 3.9952 0.5369 1.3083 7 6 4.1574 2.5768 -0.1251 8 6 5.6539 2.4492 -0.2480 9 8 6.1721 1.3527 -0.2367 10 7 6.4165 3.5536 -0.3716 11 6 7.8713 3.4295 -0.4916 12 1 8.1371 2.5070 -1.0079 13 6 8.5476 3.4928 0.9009 14 7 9.9246 3.9544 0.5894 15 6 10.5686 4.5297 1.7778 16 6 10.4804 3.5508 2.9203 17 8 9.9352 2.4793 2.7600 18 7 11.0083 3.8658 4.1197 19 6 10.9285 2.9751 5.1589 20 1 10.4423 2.0212 5.0164 21 6 11.4722 3.2999 6.3956 22 7 12.0633 4.4607 6.5690 23 14 11.3642 2.0861 7.8113 24 1 12.5571 1.2017 7.7972 25 1 11.3132 2.8280 9.0967 26 1 10.1364 1.2635 7.6655 27 6 9.7782 4.9686 -0.4773 28 6 8.4666 4.6557 -1.2211 29 1 7.7837 5.5027 -1.1564 30 6 8.7545 4.3147 -2.6847 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6885 1.8464 0.8899 35 1 1.6886 1.8464 -0.8900 36 1 3.6792 1.1533 2.1499 37 1 3.5521 -0.4550 1.3978 38 1 5.0818 0.4504 1.3085 39 1 3.9143 3.1646 0.7600 40 1 3.7610 3.0731 -1.0109 41 1 6.0022 4.4306 -0.3810 42 1 8.5681 2.5063 1.3639 43 1 8.0377 4.2101 1.5440 44 1 10.0631 5.4555 2.0527 45 1 11.6156 4.7387 1.5584 46 1 11.4446 4.7226 4.2477 47 1 12.4432 4.6873 7.4323 48 1 9.7275 5.9648 -0.0380 49 1 10.6219 4.9086 -1.1649 50 1 9.4282 3.4592 -2.7327 51 1 7.8207 4.0708 -3.1912 52 1 9.2194 5.1714 -3.1726 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209895969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:39 Heat of formation + Delta-G solvation = -119.779521 kcal Electronic energy + Delta-G solvation = -30405.655088 eV Core-core repulsion = 26212.072889 eV Total energy + Delta-G solvation = -4193.582199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27851 -39.14302 -38.25328 -37.59829 -34.92982 -34.38652 -33.84883 -32.54175 -31.24678 -29.41887 -28.07300 -27.45169 -26.94696 -25.68067 -25.18691 -23.84005 -21.64290 -20.70315 -20.57457 -19.79624 -19.19880 -17.85798 -17.39348 -16.69340 -16.29519 -16.25494 -16.00541 -15.44677 -15.18911 -14.98230 -14.61177 -14.46223 -14.23553 -13.95157 -13.89010 -13.53109 -13.42236 -13.20342 -13.15024 -12.78709 -12.42288 -12.40820 -12.23625 -11.85353 -11.81111 -11.68577 -11.52897 -11.30979 -11.26671 -11.17137 -11.06387 -11.01167 -10.83241 -10.79403 -10.57842 -10.36112 -10.20542 -9.94747 -9.69110 -9.48439 -8.97910 -8.35507 -8.00110 -7.87670 -6.40942 -3.81536 2.65812 2.99736 3.19149 3.27757 3.34080 3.56884 3.90521 4.10486 4.33134 4.44989 4.60424 4.63930 4.74612 4.77576 4.79868 4.96761 4.99496 5.08079 5.10155 5.12195 5.18550 5.25831 5.30561 5.35964 5.37425 5.42119 5.51485 5.54411 5.62668 5.71865 5.72413 5.84530 5.86867 5.93836 5.97397 6.08296 6.15087 6.19529 6.20402 6.27397 6.44642 6.56357 6.76416 6.88286 7.21734 7.30318 7.48425 7.56718 8.07232 8.26639 8.62728 9.19248 9.54555 10.06708 10.76747 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008722 B = 0.002654 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.543335 B =10547.287996 C =13366.292035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.066 3.934 4 C -0.074 4.074 5 H 0.087 0.913 6 C -0.151 4.151 7 C -0.136 4.136 8 C 0.513 3.487 9 O -0.524 6.524 10 N -0.724 5.724 11 C 0.140 3.860 12 H 0.105 0.895 13 C 0.032 3.968 14 N -0.493 5.493 15 C 0.038 3.962 16 C 0.440 3.560 17 O -0.576 6.576 18 N -0.562 5.562 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.037 3.963 28 C -0.108 4.108 29 H 0.076 0.924 30 C -0.139 4.139 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.396 0.604 42 H 0.123 0.877 43 H 0.036 0.964 44 H 0.048 0.952 45 H 0.091 0.909 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.044 0.956 49 H 0.081 0.919 50 H 0.063 0.937 51 H 0.053 0.947 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.664 4.366 -16.830 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.011 4.011 4 C -0.093 4.093 5 H 0.105 0.895 6 C -0.208 4.208 7 C -0.176 4.176 8 C 0.299 3.701 9 O -0.399 6.399 10 N -0.375 5.375 11 C 0.035 3.965 12 H 0.123 0.877 13 C -0.097 4.097 14 N -0.218 5.218 15 C -0.094 4.094 16 C 0.226 3.774 17 O -0.461 6.461 18 N -0.199 5.199 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.091 4.091 28 C -0.128 4.128 29 H 0.094 0.906 30 C -0.197 4.197 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.230 0.770 42 H 0.141 0.859 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.100 0.900 50 H 0.082 0.918 51 H 0.072 0.928 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.108 2.317 -16.908 24.164 hybrid contribution -0.598 1.696 1.230 2.179 sum -17.706 4.013 -15.677 23.987 Atomic orbital electron populations 1.22734 0.81222 1.02751 0.99813 1.87906 1.19422 1.27871 1.95350 1.22607 0.93870 0.84696 0.99922 1.20818 0.91817 0.95222 1.01415 0.89477 1.21909 1.03587 1.00560 0.94793 1.21645 0.92502 0.99244 1.04210 1.20508 0.89120 0.84434 0.75989 1.90732 1.74787 1.26062 1.48318 1.45996 1.07250 1.08942 1.75354 1.22111 0.78379 0.99145 0.96862 0.87748 1.23835 0.86860 1.04288 0.94677 1.64566 1.18360 1.31764 1.07062 1.22111 1.00694 0.95914 0.90689 1.19732 0.84942 0.88910 0.83835 1.90473 1.47780 1.25091 1.82725 1.41846 1.50678 1.18542 1.08818 1.19706 1.34892 0.99617 0.88478 0.87886 1.25260 0.96696 0.97108 0.98906 1.69616 1.38005 1.21283 1.25471 0.85860 0.78965 0.79774 0.79728 1.20356 1.20965 1.19389 1.23028 0.97022 0.94254 0.94815 1.22244 0.97041 0.97509 0.95982 0.90608 1.21810 1.01641 1.01892 0.94339 0.89651 0.94125 0.94239 0.93219 0.93474 0.93508 0.92170 0.90239 0.88691 0.88977 0.76998 0.85901 0.94561 0.93423 0.89082 0.77496 0.91902 0.93809 0.90025 0.91775 0.92793 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.05 10.24 -35.23 -0.36 -4.41 16 3 C 0.07 0.57 5.32 37.16 0.20 0.77 16 4 C -0.07 -0.77 2.27 -90.62 -0.21 -0.98 16 5 H 0.09 1.05 7.95 -51.93 -0.41 0.64 16 6 C -0.15 -1.91 8.83 37.16 0.33 -1.59 16 7 C -0.14 -1.17 5.17 -27.89 -0.14 -1.32 16 8 C 0.51 6.43 7.55 -10.99 -0.08 6.35 16 9 O -0.52 -8.95 13.61 5.56 0.08 -8.88 16 10 N -0.72 -7.93 5.18 -52.01 -0.27 -8.20 16 11 C 0.14 1.89 2.97 -66.07 -0.20 1.70 16 12 H 0.10 1.65 7.26 -51.93 -0.38 1.27 16 13 C 0.03 0.56 4.99 -1.90 -0.01 0.55 16 14 N -0.49 -8.39 5.26 -231.88 -1.22 -9.61 16 15 C 0.04 0.68 5.52 -4.97 -0.03 0.66 16 16 C 0.44 10.53 7.49 -10.98 -0.08 10.45 16 17 O -0.58 -15.71 13.10 5.55 0.07 -15.64 16 18 N -0.56 -14.39 5.29 -10.96 -0.06 -14.44 16 19 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16 20 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 23 Si 0.93 21.35 29.55 -169.99 -5.02 16.32 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.04 0.46 6.35 -2.75 -0.02 0.45 16 28 C -0.11 -1.14 3.32 -89.26 -0.30 -1.43 16 29 H 0.08 0.65 7.75 -51.93 -0.40 0.25 16 30 C -0.14 -1.27 8.89 37.16 0.33 -0.94 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.77 7.82 -51.92 -0.41 0.37 16 38 H 0.08 1.24 5.95 -51.93 -0.31 0.93 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.40 3.02 8.39 -40.82 -0.34 2.68 16 42 H 0.12 2.76 5.97 -51.93 -0.31 2.45 16 43 H 0.04 0.64 8.02 -51.93 -0.42 0.22 16 44 H 0.05 0.78 7.81 -51.93 -0.41 0.38 16 45 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.04 0.50 7.57 -51.93 -0.39 0.11 16 49 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 50 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 51 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 414.72 15.07 6.25 6.25 Total: -1.00 -34.16 414.72 -8.22 -42.38 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -9.08 Total: 12.23 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 0.67 Total: 7.96 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.82 Total: -56.22 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.21 Total: -28.93 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.16 -8.22 -42.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209895969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.397 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds