Wall clock time and date at job start Wed Apr 1 2020 01:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99985 * 2 1 4 4 C 1.52998 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46892 * 54.99988 * 4 3 2 6 6 C 1.52999 * 109.47249 * 295.00088 * 4 3 2 7 7 C 1.52999 * 109.47404 * 174.99875 * 4 3 2 8 8 C 1.50696 * 109.47219 * 185.00113 * 7 4 3 9 9 O 1.21281 * 120.00466 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99737 * 179.97438 * 8 7 4 11 11 C 1.46505 * 119.99909 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.64360 * 31.84793 * 11 10 8 13 13 C 1.54933 * 110.87436 * 268.59109 * 11 10 8 14 14 N 1.48534 * 103.22824 * 204.15452 * 13 11 10 15 15 C 1.46901 * 111.00172 * 159.71827 * 14 13 11 16 16 C 1.50701 * 109.46921 * 52.60615 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47268 * 89.99721 * 23 21 19 25 25 H 1.48498 * 109.47211 * 209.99980 * 23 21 19 26 26 H 1.48505 * 109.46734 * 329.99774 * 23 21 19 27 27 C 1.47912 * 105.81750 * 39.20906 * 14 13 11 28 28 C 1.53995 * 107.05535 * 334.66922 * 27 14 13 29 29 H 1.08997 * 110.30497 * 120.14229 * 28 27 14 30 30 C 1.53004 * 110.30599 * 242.31066 * 28 27 14 31 31 H 1.08996 * 109.47732 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47601 * 300.00419 * 1 2 3 33 33 H 1.09004 * 109.47062 * 59.99850 * 1 2 3 34 34 H 1.09000 * 109.47127 * 59.99551 * 3 2 1 35 35 H 1.09002 * 109.47165 * 299.99728 * 3 2 1 36 36 H 1.09001 * 109.47092 * 299.99778 * 6 4 3 37 37 H 1.09008 * 109.47168 * 60.00071 * 6 4 3 38 38 H 1.09002 * 109.46971 * 179.97438 * 6 4 3 39 39 H 1.08996 * 109.46713 * 64.99966 * 7 4 3 40 40 H 1.08998 * 109.46790 * 305.00634 * 7 4 3 41 41 H 0.96999 * 120.00543 * 0.02562 * 10 8 7 42 42 H 1.08997 * 110.67236 * 85.72169 * 13 11 10 43 43 H 1.09001 * 110.67169 * 322.59313 * 13 11 10 44 44 H 1.09002 * 109.47401 * 292.60643 * 15 14 13 45 45 H 1.09001 * 109.46874 * 172.60656 * 15 14 13 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.91505 * 94.02357 * 27 14 13 49 49 H 1.08999 * 109.91449 * 215.12087 * 27 14 13 50 50 H 1.09000 * 109.47197 * 58.54946 * 30 28 27 51 51 H 1.09002 * 109.46591 * 178.54888 * 30 28 27 52 52 H 1.08999 * 109.46977 * 298.54058 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5682 -0.8409 6 6 3.9952 0.5369 1.3083 7 6 4.1574 2.5768 -0.1251 8 6 5.6539 2.4492 -0.2480 9 8 6.1721 1.3527 -0.2367 10 7 6.4165 3.5536 -0.3716 11 6 7.8713 3.4295 -0.4916 12 1 8.1371 2.5070 -1.0079 13 6 8.5476 3.4928 0.9009 14 7 9.9246 3.9544 0.5894 15 6 10.5686 4.5297 1.7778 16 6 10.4804 3.5508 2.9203 17 8 9.9352 2.4793 2.7600 18 7 11.0083 3.8658 4.1197 19 6 10.9285 2.9751 5.1589 20 1 10.4423 2.0212 5.0164 21 6 11.4722 3.2999 6.3956 22 7 12.0633 4.4607 6.5690 23 14 11.3642 2.0861 7.8113 24 1 12.5571 1.2017 7.7972 25 1 11.3132 2.8280 9.0967 26 1 10.1364 1.2635 7.6655 27 6 9.7782 4.9686 -0.4773 28 6 8.4666 4.6557 -1.2211 29 1 7.7837 5.5027 -1.1564 30 6 8.7545 4.3147 -2.6847 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6885 1.8464 0.8899 35 1 1.6886 1.8464 -0.8900 36 1 3.6792 1.1533 2.1499 37 1 3.5521 -0.4550 1.3978 38 1 5.0818 0.4504 1.3085 39 1 3.9143 3.1646 0.7600 40 1 3.7610 3.0731 -1.0109 41 1 6.0022 4.4306 -0.3810 42 1 8.5681 2.5063 1.3639 43 1 8.0377 4.2101 1.5440 44 1 10.0631 5.4555 2.0527 45 1 11.6156 4.7387 1.5584 46 1 11.4446 4.7226 4.2477 47 1 12.4432 4.6873 7.4323 48 1 9.7275 5.9648 -0.0380 49 1 10.6219 4.9086 -1.1649 50 1 9.4282 3.4592 -2.7327 51 1 7.8207 4.0708 -3.1912 52 1 9.2194 5.1714 -3.1726 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209895969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:38 Heat of formation + Delta-G solvation = -147.598870 kcal Electronic energy + Delta-G solvation = -30406.861426 eV Core-core repulsion = 26212.072889 eV Total energy + Delta-G solvation = -4194.788537 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38435 -40.50574 -39.35893 -38.83130 -36.15495 -35.73496 -35.34388 -33.64389 -33.28770 -30.51785 -29.22245 -28.27362 -28.04977 -26.80463 -26.34741 -25.22373 -22.85484 -21.76964 -21.51938 -21.08552 -20.66891 -19.89555 -18.32763 -17.79336 -17.62592 -17.12128 -16.94375 -16.65434 -16.42989 -16.26005 -15.97694 -15.84997 -15.69463 -15.25234 -14.95498 -14.79531 -14.50744 -14.35710 -14.15282 -14.06369 -13.66099 -13.54214 -13.27848 -13.08610 -13.02824 -12.98096 -12.83584 -12.50466 -12.45104 -12.40847 -12.21234 -12.15347 -12.06174 -11.87543 -11.83303 -11.67732 -11.64896 -11.49511 -10.74822 -10.56981 -10.26898 -10.06352 -9.94418 -9.32029 -8.49525 -5.97984 1.34842 1.38717 1.51418 1.68003 2.01345 2.09180 2.26735 2.84732 2.96671 3.17076 3.35510 3.57522 3.69479 3.72705 3.89083 3.96299 4.06987 4.19252 4.24981 4.27422 4.37394 4.45889 4.48459 4.48783 4.51346 4.53977 4.59055 4.60886 4.65098 4.69905 4.70813 4.87577 4.89264 4.93616 4.97827 5.05738 5.07899 5.14383 5.24459 5.30666 5.37038 5.38467 5.43058 5.55271 5.83666 5.95878 6.12213 6.29479 6.58139 6.60817 7.10672 7.35154 7.52516 8.09974 8.67819 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008722 B = 0.002654 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.543335 B =10547.287996 C =13366.292035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.069 3.931 4 C -0.073 4.073 5 H 0.063 0.937 6 C -0.148 4.148 7 C -0.124 4.124 8 C 0.504 3.496 9 O -0.580 6.580 10 N -0.709 5.709 11 C 0.150 3.850 12 H 0.073 0.927 13 C 0.038 3.962 14 N -0.516 5.516 15 C 0.050 3.950 16 C 0.434 3.566 17 O -0.617 6.617 18 N -0.571 5.571 19 C -0.332 4.332 20 H 0.074 0.926 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.267 1.267 26 H -0.276 1.276 27 C 0.036 3.964 28 C -0.094 4.094 29 H 0.110 0.890 30 C -0.135 4.135 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.041 0.959 39 H 0.118 0.882 40 H 0.134 0.866 41 H 0.417 0.583 42 H 0.061 0.939 43 H 0.032 0.968 44 H 0.074 0.926 45 H 0.113 0.887 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.065 0.935 49 H 0.094 0.906 50 H 0.044 0.956 51 H 0.061 0.939 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.147 7.509 -18.050 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.007 4.007 4 C -0.092 4.092 5 H 0.082 0.918 6 C -0.205 4.205 7 C -0.164 4.164 8 C 0.292 3.708 9 O -0.459 6.459 10 N -0.362 5.362 11 C 0.043 3.957 12 H 0.091 0.909 13 C -0.091 4.091 14 N -0.241 5.241 15 C -0.081 4.081 16 C 0.222 3.778 17 O -0.503 6.503 18 N -0.208 5.208 19 C -0.462 4.462 20 H 0.092 0.908 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.197 1.197 25 H -0.191 1.191 26 H -0.201 1.201 27 C -0.092 4.092 28 C -0.113 4.113 29 H 0.128 0.872 30 C -0.193 4.193 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.136 0.864 40 H 0.152 0.848 41 H 0.255 0.745 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.091 0.909 45 H 0.130 0.870 46 H 0.231 0.769 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.112 0.888 50 H 0.064 0.936 51 H 0.080 0.920 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.600 5.534 -18.147 26.568 hybrid contribution -0.131 0.666 1.590 1.729 sum -18.731 6.200 -16.556 25.756 Atomic orbital electron populations 1.22902 0.79528 1.03560 1.01000 1.87865 1.21404 1.29133 1.95630 1.22618 0.91874 0.84457 1.01795 1.20772 0.93785 0.95840 0.98770 0.91835 1.21835 1.00957 1.00725 0.97016 1.21658 0.88952 0.98601 1.07162 1.21354 0.90978 0.83784 0.74641 1.90726 1.76095 1.28342 1.50745 1.45847 1.06107 1.09827 1.74405 1.21783 0.79787 0.99729 0.94393 0.90862 1.23501 0.88126 1.00805 0.96706 1.64481 1.17983 1.34230 1.07443 1.22008 1.02536 0.94667 0.88875 1.20854 0.82982 0.89346 0.84621 1.90491 1.48929 1.27325 1.83557 1.41899 1.51397 1.18433 1.09110 1.19600 1.36678 0.99622 0.90301 0.90786 1.26003 0.95755 0.98813 1.00548 1.69664 1.37741 1.22095 1.26383 0.84965 0.78658 0.77773 0.77160 1.19656 1.19143 1.20101 1.23186 0.98577 0.93848 0.93544 1.22232 0.96370 0.96648 0.96049 0.87235 1.21784 1.01916 1.02147 0.93421 0.89219 0.93187 0.92696 0.91839 0.90871 0.92458 0.93213 0.94004 0.86394 0.84806 0.74474 0.92071 0.94925 0.90863 0.86951 0.76916 0.91220 0.91632 0.88775 0.93634 0.91964 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.47 10.24 -148.98 -1.53 -9.99 16 3 C 0.07 1.05 5.32 71.98 0.38 1.44 16 4 C -0.07 -1.50 2.27 -10.79 -0.02 -1.53 16 5 H 0.06 1.61 7.95 -2.39 -0.02 1.59 16 6 C -0.15 -3.99 8.83 71.98 0.64 -3.36 16 7 C -0.12 -1.89 5.17 29.85 0.15 -1.74 16 8 C 0.50 12.71 7.55 87.66 0.66 13.38 16 9 O -0.58 -21.46 13.61 -3.03 -0.04 -21.50 16 10 N -0.71 -14.74 5.18 -436.84 -2.26 -17.00 16 11 C 0.15 4.03 2.97 46.19 0.14 4.17 16 12 H 0.07 2.46 7.26 -2.39 -0.02 2.45 16 13 C 0.04 1.38 4.99 86.65 0.43 1.81 16 14 N -0.52 -17.47 5.26 -887.54 -4.67 -22.14 16 15 C 0.05 1.80 5.52 85.56 0.47 2.27 16 16 C 0.43 21.55 7.49 87.66 0.66 22.21 16 17 O -0.62 -35.92 13.10 -3.07 -0.04 -35.96 16 18 N -0.57 -30.14 5.29 -306.98 -1.62 -31.76 16 19 C -0.33 -19.46 9.68 84.04 0.81 -18.65 16 20 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 22 N -0.92 -50.08 13.05 21.66 0.28 -49.80 16 23 Si 0.99 44.15 29.55 68.60 2.03 46.18 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 27 C 0.04 0.79 6.35 86.44 0.55 1.34 16 28 C -0.09 -1.70 3.32 -9.91 -0.03 -1.73 16 29 H 0.11 1.32 7.75 -2.39 -0.02 1.31 16 30 C -0.14 -2.08 8.89 71.98 0.64 -1.44 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.05 1.39 7.82 -2.38 -0.02 1.37 16 38 H 0.04 1.44 5.95 -2.39 -0.01 1.43 16 39 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.42 5.02 8.39 -92.71 -0.78 4.24 16 42 H 0.06 3.01 5.97 -2.39 -0.01 3.00 16 43 H 0.03 1.17 8.02 -2.39 -0.02 1.15 16 44 H 0.07 2.25 7.81 -2.39 -0.02 2.23 16 45 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 46 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 47 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 48 H 0.07 1.21 7.57 -2.39 -0.02 1.19 16 49 H 0.09 1.87 7.69 -2.39 -0.02 1.85 16 50 H 0.04 0.88 8.13 -2.39 -0.02 0.86 16 51 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -82.39 414.72 -1.25 -83.64 By element: Atomic # 1 Polarization: 39.33 SS G_CDS: -0.59 Total: 38.74 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 7.19 Total: 19.59 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -8.27 Total: -120.70 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -1.61 Total: -67.45 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -82.39 -1.25 -83.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209895969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.961 kcal (2) G-P(sol) polarization free energy of solvation -82.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds