Wall clock time and date at job start Wed Apr 1 2020 01:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99907 * 2 1 4 4 C 1.52995 * 109.47175 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47189 * 305.00402 * 4 3 2 6 6 C 1.53010 * 109.47161 * 64.99800 * 4 3 2 7 7 C 1.52999 * 109.47366 * 184.99811 * 4 3 2 8 8 C 1.50696 * 109.47219 * 174.99932 * 7 4 3 9 9 O 1.21281 * 120.00466 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99737 * 179.97438 * 8 7 4 11 11 C 1.46505 * 119.99909 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.64360 * 31.84793 * 11 10 8 13 13 C 1.54933 * 110.87436 * 268.59109 * 11 10 8 14 14 N 1.48534 * 103.22824 * 204.15452 * 13 11 10 15 15 C 1.46901 * 111.00172 * 159.71827 * 14 13 11 16 16 C 1.50701 * 109.46921 * 52.60615 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47117 * 59.99412 * 23 21 19 25 25 H 1.48498 * 109.47600 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47088 * 299.99811 * 23 21 19 27 27 C 1.47912 * 105.81750 * 39.20906 * 14 13 11 28 28 C 1.53995 * 107.05535 * 334.66922 * 27 14 13 29 29 H 1.08997 * 110.30497 * 120.14229 * 28 27 14 30 30 C 1.53004 * 110.30707 * 242.21116 * 28 27 14 31 31 H 1.08999 * 109.47086 * 60.00176 * 1 2 3 32 32 H 1.08996 * 109.46907 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47204 * 300.00529 * 1 2 3 34 34 H 1.08993 * 109.47142 * 59.99498 * 3 2 1 35 35 H 1.09000 * 109.46490 * 299.99696 * 3 2 1 36 36 H 1.09003 * 109.46989 * 300.00217 * 6 4 3 37 37 H 1.08998 * 109.47066 * 59.99680 * 6 4 3 38 38 H 1.09001 * 109.46761 * 179.97438 * 6 4 3 39 39 H 1.08996 * 109.46713 * 54.99785 * 7 4 3 40 40 H 1.08998 * 109.46790 * 295.00453 * 7 4 3 41 41 H 0.96999 * 120.00543 * 0.02562 * 10 8 7 42 42 H 1.08997 * 110.67236 * 85.72169 * 13 11 10 43 43 H 1.09001 * 110.67169 * 322.59313 * 13 11 10 44 44 H 1.09002 * 109.47401 * 292.60643 * 15 14 13 45 45 H 1.09001 * 109.46874 * 172.60656 * 15 14 13 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.91505 * 94.02357 * 27 14 13 49 49 H 1.08999 * 109.91449 * 215.12087 * 27 14 13 50 50 H 1.08992 * 109.47205 * 58.54967 * 30 28 27 51 51 H 1.09001 * 109.46768 * 178.54594 * 30 28 27 52 52 H 1.08999 * 109.46969 * 298.54345 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8508 0.5686 0.8427 6 6 3.9963 0.5365 -1.3065 7 6 4.1573 2.5770 0.1263 8 6 5.6537 2.4495 0.2505 9 8 6.1719 1.3531 0.2391 10 7 6.4162 3.5540 0.3732 11 6 7.8711 3.4301 0.4933 12 1 8.2299 2.5627 -0.0607 13 6 8.2970 3.3453 1.9806 14 7 9.7028 3.8242 1.9593 15 6 10.1274 4.2697 3.2932 16 6 9.8527 3.1804 4.2977 17 8 9.3529 2.1355 3.9377 18 7 10.1635 3.3668 5.5959 19 6 9.9140 2.3756 6.5096 20 1 9.4682 1.4455 6.1891 21 6 10.2338 2.5680 7.8479 22 7 10.7759 3.6998 8.2379 23 14 9.8947 1.2172 9.0928 24 1 10.6497 -0.0046 8.7156 25 1 10.3242 1.6673 10.4412 26 1 8.4409 0.9147 9.1113 27 6 9.7331 4.9430 0.9923 28 6 8.5720 4.7190 0.0059 29 1 7.8806 5.5610 0.0381 30 6 9.1103 4.5289 -1.4136 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.6886 1.8464 0.8899 35 1 1.6886 1.8463 -0.8900 36 1 3.5533 -0.4554 -1.3960 37 1 3.6809 1.1525 -2.1485 38 1 5.0829 0.4509 -1.3061 39 1 3.7602 3.0736 1.0116 40 1 3.9148 3.1645 -0.7592 41 1 6.0019 4.4310 0.3819 42 1 8.2464 2.3166 2.3372 43 1 7.6775 3.9978 2.5960 44 1 9.5739 5.1670 3.5699 45 1 11.1947 4.4908 3.2797 46 1 10.5635 4.2023 5.8836 47 1 10.9994 3.8340 9.1722 48 1 9.5986 5.8897 1.5155 49 1 10.6830 4.9460 0.4577 50 1 9.7908 3.6777 -1.4332 51 1 8.2799 4.3459 -2.0956 52 1 9.6435 5.4276 -1.7233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209895975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:42 Heat of formation + Delta-G solvation = -119.704031 kcal Electronic energy + Delta-G solvation = -30345.498050 eV Core-core repulsion = 26151.919124 eV Total energy + Delta-G solvation = -4193.578926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.27993 -39.14468 -38.24835 -37.59639 -34.94214 -34.38871 -33.84789 -32.54294 -31.24608 -29.42128 -28.07432 -27.48312 -26.96950 -25.68239 -25.18584 -23.83823 -21.63034 -20.74063 -20.58079 -19.78378 -19.19797 -17.85660 -17.40516 -16.66831 -16.28430 -16.25682 -16.02487 -15.45201 -15.18887 -14.99466 -14.61779 -14.53137 -14.13242 -14.00835 -13.76951 -13.59186 -13.51960 -13.17882 -13.17170 -12.77079 -12.44781 -12.41672 -12.26155 -11.86040 -11.82351 -11.69801 -11.52831 -11.32395 -11.25281 -11.22422 -11.04181 -11.02116 -10.84270 -10.79547 -10.58933 -10.39805 -10.19915 -9.94078 -9.71915 -9.47361 -8.97110 -8.35377 -7.99969 -7.87590 -6.40702 -3.81371 2.65883 2.99634 3.21658 3.27033 3.32116 3.57474 3.90708 4.10615 4.33199 4.44939 4.59547 4.63266 4.74416 4.77575 4.79799 4.96587 5.01381 5.08282 5.10933 5.14153 5.15926 5.25979 5.29386 5.36496 5.37345 5.41960 5.51382 5.54091 5.55294 5.68557 5.72008 5.84587 5.86906 5.93674 5.96581 6.00804 6.15067 6.16362 6.19894 6.27543 6.36735 6.51168 6.76556 6.88978 7.21787 7.30426 7.48361 7.56711 8.07187 8.26509 8.62937 9.19313 9.54657 10.06910 10.76925 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008526 B = 0.002631 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3283.167833 B =10639.980268 C =13447.498806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.066 3.934 4 C -0.076 4.076 5 H 0.090 0.910 6 C -0.148 4.148 7 C -0.135 4.135 8 C 0.513 3.487 9 O -0.524 6.524 10 N -0.724 5.724 11 C 0.141 3.859 12 H 0.105 0.895 13 C 0.032 3.968 14 N -0.493 5.493 15 C 0.038 3.962 16 C 0.440 3.560 17 O -0.577 6.577 18 N -0.562 5.562 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.037 3.963 28 C -0.108 4.108 29 H 0.075 0.925 30 C -0.139 4.139 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.396 0.604 42 H 0.123 0.877 43 H 0.036 0.964 44 H 0.048 0.952 45 H 0.091 0.909 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.044 0.956 49 H 0.081 0.919 50 H 0.063 0.937 51 H 0.053 0.947 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.508 6.234 -19.363 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.011 4.011 4 C -0.095 4.095 5 H 0.108 0.892 6 C -0.205 4.205 7 C -0.176 4.176 8 C 0.300 3.700 9 O -0.399 6.399 10 N -0.375 5.375 11 C 0.035 3.965 12 H 0.123 0.877 13 C -0.097 4.097 14 N -0.217 5.217 15 C -0.094 4.094 16 C 0.226 3.774 17 O -0.461 6.461 18 N -0.199 5.199 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.091 4.091 28 C -0.128 4.128 29 H 0.094 0.906 30 C -0.197 4.197 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.230 0.770 42 H 0.141 0.859 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.100 0.900 50 H 0.082 0.918 51 H 0.072 0.928 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.919 4.201 -19.556 24.369 hybrid contribution -0.839 1.558 1.321 2.208 sum -14.758 5.759 -18.235 24.156 Atomic orbital electron populations 1.22735 0.81203 1.02764 0.99815 1.87908 1.19441 1.27846 1.95352 1.22597 0.93817 0.84725 0.99936 1.20834 0.91904 0.95357 1.01426 0.89163 1.21885 1.03253 1.00553 0.94834 1.21637 0.92542 0.99171 1.04212 1.20508 0.89136 0.84429 0.75975 1.90732 1.74703 1.25976 1.48486 1.45995 1.07328 1.08950 1.75267 1.22107 0.78564 0.98393 0.97416 0.87747 1.23836 0.87253 1.04746 0.93840 1.64565 1.22212 1.28920 1.06052 1.22110 1.01750 0.96410 0.89129 1.19733 0.85188 0.89259 0.83264 1.90473 1.48229 1.28651 1.78736 1.41838 1.54862 1.17564 1.05588 1.19659 1.38411 0.97348 0.87364 0.87938 1.25257 0.96976 0.97675 0.98020 1.69607 1.42617 1.24300 1.17871 0.85919 0.78978 0.80505 0.78844 1.19834 1.20990 1.19912 1.23028 0.98585 0.93343 0.94164 1.22242 0.97180 0.97343 0.96005 0.90621 1.21808 1.00994 1.02126 0.94751 0.94238 0.89642 0.94111 0.93301 0.93367 0.92163 0.93780 0.90510 0.88756 0.88899 0.76996 0.85901 0.94560 0.93422 0.89080 0.77490 0.91842 0.93809 0.90024 0.91782 0.92789 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.10 10.24 -35.23 -0.36 -4.46 16 3 C 0.07 0.58 5.32 37.15 0.20 0.77 16 4 C -0.08 -0.80 2.27 -90.62 -0.21 -1.00 16 5 H 0.09 1.19 7.96 -51.93 -0.41 0.77 16 6 C -0.15 -1.63 8.83 37.16 0.33 -1.30 16 7 C -0.14 -1.17 5.17 -27.89 -0.14 -1.31 16 8 C 0.51 6.43 7.55 -10.99 -0.08 6.35 16 9 O -0.52 -8.95 13.61 5.56 0.08 -8.88 16 10 N -0.72 -7.93 5.18 -52.01 -0.27 -8.20 16 11 C 0.14 1.89 2.97 -66.07 -0.20 1.70 16 12 H 0.10 1.65 7.27 -51.93 -0.38 1.27 16 13 C 0.03 0.56 4.99 -1.90 -0.01 0.55 16 14 N -0.49 -8.41 5.26 -231.88 -1.22 -9.63 16 15 C 0.04 0.69 5.52 -4.97 -0.03 0.66 16 16 C 0.44 10.55 7.49 -10.98 -0.08 10.47 16 17 O -0.58 -15.77 13.10 5.55 0.07 -15.70 16 18 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 19 C -0.30 -8.42 9.68 -14.94 -0.14 -8.56 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 23 Si 0.93 21.39 29.55 -169.99 -5.02 16.36 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.04 0.46 6.35 -2.75 -0.02 0.45 16 28 C -0.11 -1.14 3.32 -89.26 -0.30 -1.43 16 29 H 0.08 0.65 7.75 -51.93 -0.40 0.25 16 30 C -0.14 -1.27 8.90 37.16 0.33 -0.94 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 37 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 1.02 5.95 -51.93 -0.31 0.71 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.40 3.02 8.39 -40.82 -0.34 2.68 16 42 H 0.12 2.77 5.97 -51.93 -0.31 2.46 16 43 H 0.04 0.64 8.02 -51.93 -0.42 0.22 16 44 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 45 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 47 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.04 0.50 7.57 -51.93 -0.39 0.11 16 49 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 414.73 15.07 6.25 6.25 Total: -1.00 -34.25 414.73 -8.22 -42.47 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -9.08 Total: 12.02 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 0.67 Total: 8.24 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.82 Total: -56.30 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.21 Total: -29.04 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.25 -8.22 -42.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209895975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.235 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds