Wall clock time and date at job start Wed Apr 1 2020 01:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47563 * 305.00337 * 5 4 3 7 7 C 1.53001 * 109.47279 * 65.00040 * 5 4 3 8 8 C 1.50700 * 109.47798 * 185.00026 * 5 4 3 9 9 O 1.21284 * 119.99429 * 359.97438 * 8 5 4 10 10 N 1.34767 * 120.00754 * 180.02562 * 8 5 4 11 11 C 1.46499 * 120.00614 * 179.97438 * 10 8 5 12 12 H 1.09003 * 110.27026 * 32.90965 * 11 10 8 13 13 C 1.53988 * 110.30885 * 270.71788 * 11 10 8 14 14 N 1.47902 * 107.05473 * 242.30547 * 13 11 10 15 15 C 1.46907 * 110.99841 * 214.15220 * 14 13 11 16 16 C 1.50694 * 109.47226 * 307.39974 * 15 14 13 17 17 O 1.21283 * 120.00442 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99640 * 179.97438 * 16 15 14 19 19 C 1.37103 * 120.00086 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99563 * 0.02562 * 19 18 16 21 21 C 1.38941 * 120.00209 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00431 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99869 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47186 * 60.00624 * 23 21 19 25 25 H 1.48503 * 109.46835 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47201 * 300.00175 * 23 21 19 27 27 C 1.48536 * 105.82358 * 334.66805 * 14 13 11 28 28 C 1.54593 * 110.31249 * 154.99730 * 11 10 8 29 29 H 1.09006 * 110.72250 * 22.51655 * 28 11 10 30 30 C 1.52999 * 110.72694 * 259.23631 * 28 11 10 31 31 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 32 32 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 33 33 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 35 35 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 36 36 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 37 37 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 38 38 H 1.09000 * 109.47104 * 59.99686 * 7 5 4 39 39 H 1.08993 * 109.47832 * 180.02562 * 7 5 4 40 40 H 1.09001 * 109.46924 * 300.00271 * 7 5 4 41 41 H 0.97003 * 120.00036 * 359.97438 * 10 8 5 42 42 H 1.08994 * 109.91864 * 1.65592 * 13 11 10 43 43 H 1.09002 * 109.92089 * 122.95537 * 13 11 10 44 44 H 1.09004 * 109.46582 * 67.39940 * 15 14 13 45 45 H 1.09002 * 109.46968 * 187.39518 * 15 14 13 46 46 H 0.97000 * 120.00233 * 359.97438 * 18 16 15 47 47 H 0.97000 * 120.00478 * 179.97438 * 22 21 19 48 48 H 1.08998 * 110.66721 * 280.77365 * 27 14 13 49 49 H 1.08994 * 110.66710 * 157.64325 * 27 14 13 50 50 H 1.08997 * 109.47250 * 59.99560 * 30 28 11 51 51 H 1.08997 * 109.47687 * 179.97438 * 30 28 11 52 52 H 1.09004 * 109.47167 * 299.99909 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 0.0000 6 1 3.7669 3.1545 -0.8413 7 6 3.8089 3.2953 1.3079 8 6 5.6552 2.4656 -0.1245 9 8 6.1735 1.3721 -0.2052 10 7 6.4183 3.5762 -0.1450 11 6 7.8739 3.4628 -0.2654 12 1 8.1362 2.5984 -0.8755 13 6 8.5185 3.3510 1.1286 14 7 9.3960 4.5296 1.2965 15 6 10.5863 4.1912 2.0882 16 6 10.1625 3.5378 3.3783 17 8 8.9848 3.3710 3.6154 18 7 11.0922 3.1389 4.2688 19 6 10.7067 2.5450 5.4428 20 1 9.6580 2.3965 5.6539 21 6 11.6652 2.1333 6.3606 22 7 12.9412 2.3136 6.1037 23 14 11.1398 1.3234 7.9599 24 1 10.3752 0.0862 7.6604 25 1 12.3432 0.9808 8.7598 26 1 10.2836 2.2600 8.7311 27 6 9.7726 4.9531 -0.0765 28 6 8.4636 4.7526 -0.8807 29 1 7.7873 5.5946 -0.7330 30 6 8.7666 4.5539 -2.3672 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6886 1.8464 -0.8900 35 1 1.6887 1.8463 0.8900 36 1 3.8575 0.6435 0.8891 37 1 3.8568 0.6439 -0.8908 38 1 4.1999 2.7231 2.1492 39 1 4.2519 4.2912 1.3083 40 1 2.7259 3.3798 1.3980 41 1 6.0038 4.4508 -0.0800 42 1 7.7449 3.3516 1.8965 43 1 9.1084 2.4367 1.1928 44 1 11.2155 3.5040 1.5225 45 1 11.1469 5.0998 2.3080 46 1 12.0341 3.2720 4.0791 47 1 13.6104 2.0265 6.7446 48 1 10.5670 4.3192 -0.4702 49 1 10.0739 6.0005 -0.0869 50 1 7.8470 4.3008 -2.8948 51 1 9.1803 5.4741 -2.7799 52 1 9.4880 3.7455 -2.4861 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211162756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:58 Heat of formation + Delta-G solvation = -122.686167 kcal Electronic energy + Delta-G solvation = -30485.186990 eV Core-core repulsion = 26291.478749 eV Total energy + Delta-G solvation = -4193.708241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.34350 -39.10951 -38.17126 -37.58710 -34.99248 -34.47008 -33.82294 -32.53862 -31.23326 -29.72253 -28.60578 -27.28570 -26.59773 -25.41738 -24.93583 -23.82014 -22.10830 -21.04714 -20.57471 -19.60403 -19.04998 -17.79535 -17.40945 -16.81095 -16.43756 -16.25988 -15.90202 -15.36969 -15.20338 -14.98572 -14.87094 -14.55768 -14.13669 -14.00419 -13.83791 -13.62161 -13.28151 -13.21269 -13.04686 -12.78860 -12.53329 -12.22037 -12.04804 -12.01817 -11.90641 -11.81304 -11.53220 -11.47859 -11.33128 -11.23147 -11.11743 -11.07804 -11.03127 -10.78472 -10.72216 -10.41520 -10.19583 -9.93145 -9.67123 -9.47406 -8.97487 -8.38406 -7.98557 -7.90620 -6.39873 -3.80604 2.67065 3.05719 3.21889 3.27280 3.31970 3.57964 3.91689 4.08204 4.27075 4.41211 4.51807 4.64840 4.72472 4.74426 4.92068 4.95286 4.96892 5.06595 5.07250 5.12149 5.16652 5.20490 5.26723 5.33404 5.36055 5.40730 5.49711 5.56181 5.56910 5.61879 5.71141 5.78583 5.81216 5.82570 5.92501 5.96156 6.05140 6.10308 6.12440 6.15124 6.29488 6.47291 6.76870 6.89061 7.20346 7.26644 7.53306 7.56870 8.07366 8.27284 8.63128 9.19581 9.55504 10.07164 10.77778 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008755 B = 0.002691 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.256423 B =10403.148512 C =13113.341838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.101 4.101 5 C -0.105 4.105 6 H 0.096 0.904 7 C -0.149 4.149 8 C 0.518 3.482 9 O -0.535 6.535 10 N -0.715 5.715 11 C 0.133 3.867 12 H 0.092 0.908 13 C 0.042 3.958 14 N -0.495 5.495 15 C 0.036 3.964 16 C 0.441 3.559 17 O -0.580 6.580 18 N -0.562 5.562 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.036 3.964 28 C -0.100 4.100 29 H 0.087 0.913 30 C -0.142 4.142 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.399 0.601 42 H 0.106 0.894 43 H 0.045 0.955 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.046 0.954 49 H 0.084 0.916 50 H 0.056 0.944 51 H 0.059 0.941 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.303 5.636 -17.514 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.139 4.139 5 C -0.127 4.127 6 H 0.114 0.886 7 C -0.207 4.207 8 C 0.304 3.696 9 O -0.411 6.411 10 N -0.367 5.367 11 C 0.027 3.973 12 H 0.110 0.890 13 C -0.086 4.086 14 N -0.219 5.219 15 C -0.096 4.096 16 C 0.226 3.774 17 O -0.465 6.465 18 N -0.199 5.199 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.092 4.092 28 C -0.119 4.119 29 H 0.106 0.894 30 C -0.200 4.200 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.234 0.766 42 H 0.125 0.875 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.109 0.891 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.065 0.935 49 H 0.102 0.898 50 H 0.075 0.925 51 H 0.078 0.922 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.682 4.911 -16.988 24.311 hybrid contribution 0.596 -0.256 0.418 0.772 sum -16.086 4.654 -16.570 23.558 Atomic orbital electron populations 1.22738 0.81120 1.02774 0.99864 1.87902 1.19586 1.28085 1.95389 1.22618 0.94166 0.84643 1.00137 1.21285 0.92080 0.95459 1.05114 1.21186 0.92352 0.98440 1.00703 0.88586 1.21879 1.02119 1.00624 0.96074 1.20501 0.89054 0.84339 0.75740 1.90730 1.74879 1.26666 1.48839 1.46001 1.06899 1.08933 1.74854 1.22072 0.79570 0.98353 0.97260 0.88962 1.23302 0.98045 0.91588 0.95699 1.64637 1.14589 1.32086 1.10625 1.22114 0.92352 1.00317 0.94836 1.19724 0.86833 0.84803 0.86003 1.90494 1.17287 1.60394 1.78278 1.41841 1.08221 1.52836 1.16969 1.19640 0.94792 1.34476 0.93872 0.88005 1.25256 0.94820 0.97967 0.99886 1.69602 0.99844 1.47627 1.37258 0.85922 0.77723 0.79628 0.80982 1.19886 1.20971 1.19900 1.23358 0.95646 1.01378 0.88847 1.22325 0.97438 0.97358 0.94786 0.89433 1.21772 1.01704 1.01922 0.94560 0.94061 0.94194 0.89640 0.93452 0.92902 0.90079 0.90230 0.91299 0.91711 0.91492 0.76599 0.87549 0.93641 0.93285 0.89100 0.77476 0.91830 0.93546 0.89814 0.92473 0.92189 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.26 10.70 -35.23 -0.38 -4.64 16 3 C 0.06 0.54 5.69 37.16 0.21 0.76 16 4 C -0.10 -1.10 4.40 -26.74 -0.12 -1.22 16 5 C -0.11 -1.00 2.72 -91.77 -0.25 -1.25 16 6 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 7 C -0.15 -1.30 8.84 37.16 0.33 -0.97 16 8 C 0.52 6.86 7.15 -10.99 -0.08 6.78 16 9 O -0.54 -9.51 15.57 5.55 0.09 -9.42 16 10 N -0.72 -8.34 4.90 -52.50 -0.26 -8.60 16 11 C 0.13 1.78 2.92 -66.58 -0.19 1.59 16 12 H 0.09 1.35 7.26 -51.93 -0.38 0.98 16 13 C 0.04 0.75 4.86 -2.76 -0.01 0.74 16 14 N -0.50 -8.23 5.26 -231.90 -1.22 -9.45 16 15 C 0.04 0.65 5.48 -4.98 -0.03 0.62 16 16 C 0.44 10.58 7.35 -10.99 -0.08 10.50 16 17 O -0.58 -15.69 13.37 5.55 0.07 -15.62 16 18 N -0.56 -14.49 5.29 -10.97 -0.06 -14.55 16 19 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.86 13.05 55.49 0.72 -24.13 16 23 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.04 0.44 6.00 -1.90 -0.01 0.43 16 28 C -0.10 -1.04 3.37 -88.76 -0.30 -1.34 16 29 H 0.09 0.83 7.76 -51.93 -0.40 0.42 16 30 C -0.14 -1.20 9.16 37.16 0.34 -0.86 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 40 H 0.07 0.45 6.56 -51.93 -0.34 0.11 16 41 H 0.40 3.55 7.80 -40.82 -0.32 3.23 16 42 H 0.11 2.24 6.53 -51.93 -0.34 1.90 16 43 H 0.05 0.92 7.59 -51.93 -0.39 0.52 16 44 H 0.05 0.83 7.89 -51.93 -0.41 0.42 16 45 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 46 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 47 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.05 0.55 7.73 -51.93 -0.40 0.15 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 LS Contribution 415.40 15.07 6.26 6.26 Total: -1.00 -34.50 415.40 -8.15 -42.65 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -9.03 Total: 12.06 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 0.68 Total: 9.02 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.81 Total: -56.74 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.22 Total: -29.68 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.50 -8.15 -42.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211162756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.037 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds