Wall clock time and date at job start Wed Apr 1 2020 01:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47563 * 305.00337 * 5 4 3 7 7 C 1.53001 * 109.47279 * 65.00040 * 5 4 3 8 8 C 1.50700 * 109.47798 * 185.00026 * 5 4 3 9 9 O 1.21284 * 119.99429 * 359.97438 * 8 5 4 10 10 N 1.34767 * 120.00754 * 180.02562 * 8 5 4 11 11 C 1.46499 * 120.00614 * 179.97438 * 10 8 5 12 12 H 1.09003 * 110.27026 * 32.90965 * 11 10 8 13 13 C 1.53988 * 110.30885 * 270.71788 * 11 10 8 14 14 N 1.47902 * 107.05473 * 242.30547 * 13 11 10 15 15 C 1.46907 * 110.99841 * 214.15220 * 14 13 11 16 16 C 1.50694 * 109.47226 * 307.39974 * 15 14 13 17 17 O 1.21283 * 120.00442 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99640 * 179.97438 * 16 15 14 19 19 C 1.37103 * 120.00086 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99563 * 0.02562 * 19 18 16 21 21 C 1.38941 * 120.00209 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00431 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99869 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47186 * 60.00624 * 23 21 19 25 25 H 1.48503 * 109.46835 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47201 * 300.00175 * 23 21 19 27 27 C 1.48536 * 105.82358 * 334.66805 * 14 13 11 28 28 C 1.54593 * 110.31249 * 154.99730 * 11 10 8 29 29 H 1.09006 * 110.72250 * 22.51655 * 28 11 10 30 30 C 1.52999 * 110.72694 * 259.23631 * 28 11 10 31 31 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 32 32 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 33 33 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 35 35 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 36 36 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 37 37 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 38 38 H 1.09000 * 109.47104 * 59.99686 * 7 5 4 39 39 H 1.08993 * 109.47832 * 180.02562 * 7 5 4 40 40 H 1.09001 * 109.46924 * 300.00271 * 7 5 4 41 41 H 0.97003 * 120.00036 * 359.97438 * 10 8 5 42 42 H 1.08994 * 109.91864 * 1.65592 * 13 11 10 43 43 H 1.09002 * 109.92089 * 122.95537 * 13 11 10 44 44 H 1.09004 * 109.46582 * 67.39940 * 15 14 13 45 45 H 1.09002 * 109.46968 * 187.39518 * 15 14 13 46 46 H 0.97000 * 120.00233 * 359.97438 * 18 16 15 47 47 H 0.97000 * 120.00478 * 179.97438 * 22 21 19 48 48 H 1.08998 * 110.66721 * 280.77365 * 27 14 13 49 49 H 1.08994 * 110.66710 * 157.64325 * 27 14 13 50 50 H 1.08997 * 109.47250 * 59.99560 * 30 28 11 51 51 H 1.08997 * 109.47687 * 179.97438 * 30 28 11 52 52 H 1.09004 * 109.47167 * 299.99909 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 0.0000 6 1 3.7669 3.1545 -0.8413 7 6 3.8089 3.2953 1.3079 8 6 5.6552 2.4656 -0.1245 9 8 6.1735 1.3721 -0.2052 10 7 6.4183 3.5762 -0.1450 11 6 7.8739 3.4628 -0.2654 12 1 8.1362 2.5984 -0.8755 13 6 8.5185 3.3510 1.1286 14 7 9.3960 4.5296 1.2965 15 6 10.5863 4.1912 2.0882 16 6 10.1625 3.5378 3.3783 17 8 8.9848 3.3710 3.6154 18 7 11.0922 3.1389 4.2688 19 6 10.7067 2.5450 5.4428 20 1 9.6580 2.3965 5.6539 21 6 11.6652 2.1333 6.3606 22 7 12.9412 2.3136 6.1037 23 14 11.1398 1.3234 7.9599 24 1 10.3752 0.0862 7.6604 25 1 12.3432 0.9808 8.7598 26 1 10.2836 2.2600 8.7311 27 6 9.7726 4.9531 -0.0765 28 6 8.4636 4.7526 -0.8807 29 1 7.7873 5.5946 -0.7330 30 6 8.7666 4.5539 -2.3672 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6886 1.8464 -0.8900 35 1 1.6887 1.8463 0.8900 36 1 3.8575 0.6435 0.8891 37 1 3.8568 0.6439 -0.8908 38 1 4.1999 2.7231 2.1492 39 1 4.2519 4.2912 1.3083 40 1 2.7259 3.3798 1.3980 41 1 6.0038 4.4508 -0.0800 42 1 7.7449 3.3516 1.8965 43 1 9.1084 2.4367 1.1928 44 1 11.2155 3.5040 1.5225 45 1 11.1469 5.0998 2.3080 46 1 12.0341 3.2720 4.0791 47 1 13.6104 2.0265 6.7446 48 1 10.5670 4.3192 -0.4702 49 1 10.0739 6.0005 -0.0869 50 1 7.8470 4.3008 -2.8948 51 1 9.1803 5.4741 -2.7799 52 1 9.4880 3.7455 -2.4861 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211162756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:57 Heat of formation + Delta-G solvation = -150.643795 kcal Electronic energy + Delta-G solvation = -30486.399324 eV Core-core repulsion = 26291.478749 eV Total energy + Delta-G solvation = -4194.920575 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.48311 -40.52885 -39.31798 -38.80775 -36.12921 -35.88444 -35.44211 -33.61853 -33.29485 -30.62505 -29.78398 -28.57776 -27.23009 -26.84380 -26.04026 -25.10857 -23.19057 -22.07850 -21.78922 -20.91484 -20.52950 -19.84590 -18.35356 -17.86553 -17.66012 -17.21918 -17.00855 -16.70422 -16.56730 -16.26668 -16.09966 -15.81392 -15.53413 -15.46859 -15.00760 -14.82793 -14.51240 -14.17259 -14.07120 -13.96870 -13.55918 -13.51474 -13.33839 -13.21111 -13.05421 -12.95491 -12.77679 -12.63643 -12.60740 -12.47107 -12.28612 -12.21456 -12.14420 -11.93271 -11.87394 -11.82337 -11.66617 -11.51029 -10.80562 -10.56641 -10.31366 -10.09157 -10.01231 -9.38285 -8.49806 -5.98627 1.36258 1.37937 1.49096 1.60468 2.00713 2.11824 2.25802 2.82339 2.88323 3.16417 3.23773 3.55499 3.63007 3.68271 3.87352 3.98428 4.01222 4.18294 4.24515 4.29783 4.32313 4.34076 4.42297 4.45483 4.46146 4.51127 4.55786 4.56975 4.59836 4.70733 4.82033 4.83241 4.85798 4.87547 4.90926 4.98450 5.01051 5.12821 5.20087 5.23994 5.31009 5.35865 5.37539 5.56839 5.78787 5.90980 6.06387 6.26381 6.55872 6.56804 7.09128 7.26585 7.51537 8.07700 8.67428 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008755 B = 0.002691 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.256423 B =10403.148512 C =13113.341838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.064 3.936 4 C -0.100 4.100 5 C -0.093 4.093 6 H 0.139 0.861 7 C -0.147 4.147 8 C 0.509 3.491 9 O -0.590 6.590 10 N -0.702 5.702 11 C 0.139 3.861 12 H 0.077 0.923 13 C 0.050 3.950 14 N -0.505 5.505 15 C 0.046 3.954 16 C 0.435 3.565 17 O -0.616 6.616 18 N -0.572 5.572 19 C -0.334 4.334 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.275 1.275 25 H -0.267 1.267 26 H -0.270 1.270 27 C 0.034 3.966 28 C -0.084 4.084 29 H 0.108 0.892 30 C -0.136 4.136 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.035 0.965 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.416 0.584 42 H 0.065 0.935 43 H 0.006 0.994 44 H 0.065 0.935 45 H 0.118 0.882 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.053 0.947 49 H 0.110 0.890 50 H 0.063 0.937 51 H 0.083 0.917 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.215 8.085 -19.103 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.012 4.012 4 C -0.138 4.138 5 C -0.114 4.114 6 H 0.157 0.843 7 C -0.204 4.204 8 C 0.297 3.703 9 O -0.470 6.470 10 N -0.354 5.354 11 C 0.033 3.967 12 H 0.095 0.905 13 C -0.079 4.079 14 N -0.229 5.229 15 C -0.085 4.085 16 C 0.223 3.777 17 O -0.503 6.503 18 N -0.210 5.210 19 C -0.463 4.463 20 H 0.094 0.906 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.201 1.201 25 H -0.192 1.192 26 H -0.195 1.195 27 C -0.093 4.093 28 C -0.103 4.103 29 H 0.126 0.874 30 C -0.194 4.194 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.254 0.746 42 H 0.083 0.917 43 H 0.024 0.976 44 H 0.083 0.917 45 H 0.136 0.864 46 H 0.230 0.770 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.128 0.872 50 H 0.082 0.918 51 H 0.102 0.898 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.589 7.417 -18.599 26.652 hybrid contribution 0.868 -1.031 0.898 1.619 sum -16.721 6.387 -17.702 25.174 Atomic orbital electron populations 1.22926 0.79286 1.03686 1.01135 1.87856 1.21727 1.29356 1.95678 1.22642 0.92158 0.84408 1.01991 1.21224 0.94200 0.95835 1.02525 1.21192 0.89221 0.98230 1.02770 0.84348 1.21890 1.03921 1.00448 0.94137 1.21306 0.90854 0.83718 0.74396 1.90706 1.76162 1.28783 1.51352 1.45889 1.06177 1.09555 1.73797 1.21895 0.80451 0.99911 0.94437 0.90518 1.23042 0.97000 0.90621 0.97248 1.64618 1.14011 1.30900 1.13383 1.22024 0.93293 1.01134 0.92037 1.20812 0.86101 0.83545 0.87274 1.90482 1.18935 1.61416 1.79419 1.41910 1.08682 1.53421 1.16959 1.19583 0.94055 1.36839 0.95828 0.90599 1.26037 0.94765 0.97861 1.02594 1.69660 1.00414 1.47605 1.38304 0.85007 0.77883 0.78418 0.77139 1.20059 1.19166 1.19510 1.23562 0.96795 1.02791 0.86149 1.22324 0.96501 0.95795 0.95710 0.87376 1.21743 1.02038 1.02878 0.92723 0.93048 0.92561 0.89096 0.90841 0.91510 0.93556 0.92071 0.94602 0.90338 0.88673 0.74563 0.91667 0.97581 0.91741 0.86429 0.76996 0.91222 0.92863 0.87156 0.91837 0.89848 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.43 -9.14 10.70 -148.98 -1.59 -10.74 16 3 C 0.06 1.06 5.69 71.98 0.41 1.47 16 4 C -0.10 -2.24 4.40 30.59 0.13 -2.10 16 5 C -0.09 -1.69 2.72 -11.54 -0.03 -1.72 16 6 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 7 C -0.15 -2.40 8.84 71.98 0.64 -1.76 16 8 C 0.51 13.87 7.15 87.66 0.63 14.50 16 9 O -0.59 -22.54 15.57 -3.04 -0.05 -22.59 16 10 N -0.70 -16.09 4.90 -438.39 -2.15 -18.24 16 11 C 0.14 3.75 2.92 45.87 0.13 3.88 16 12 H 0.08 2.34 7.26 -2.39 -0.02 2.32 16 13 C 0.05 1.87 4.86 86.44 0.42 2.29 16 14 N -0.50 -16.52 5.26 -887.58 -4.67 -21.19 16 15 C 0.05 1.68 5.48 85.55 0.47 2.15 16 16 C 0.44 21.69 7.35 87.65 0.64 22.33 16 17 O -0.62 -35.26 13.37 -3.04 -0.04 -35.30 16 18 N -0.57 -30.58 5.29 -307.00 -1.62 -32.20 16 19 C -0.33 -19.63 9.68 84.04 0.81 -18.81 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 22 N -0.92 -50.80 13.05 21.66 0.28 -50.52 16 23 Si 0.99 44.38 29.55 68.60 2.03 46.40 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.03 0.74 6.00 86.65 0.52 1.26 16 28 C -0.08 -1.53 3.37 -9.59 -0.03 -1.56 16 29 H 0.11 1.59 7.76 -2.38 -0.02 1.57 16 30 C -0.14 -1.86 9.16 71.98 0.66 -1.20 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.91 6.56 -2.39 -0.02 0.89 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.57 7.96 -2.39 -0.02 1.55 16 38 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 1.07 7.56 -2.39 -0.02 1.05 16 40 H 0.09 1.04 6.56 -2.39 -0.02 1.02 16 41 H 0.42 6.54 7.80 -92.71 -0.72 5.82 16 42 H 0.06 2.95 6.53 -2.39 -0.02 2.94 16 43 H 0.01 0.25 7.59 -2.39 -0.02 0.23 16 44 H 0.06 2.15 7.89 -2.38 -0.02 2.13 16 45 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 46 H 0.40 20.03 7.90 -92.71 -0.73 19.30 16 47 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 48 H 0.05 1.12 7.73 -2.39 -0.02 1.10 16 49 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.05 0.78 8.10 -2.38 -0.02 0.76 16 Total: -1.00 -81.74 415.40 -1.23 -82.97 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -0.53 Total: 39.34 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 7.12 Total: 22.08 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -8.16 Total: -122.16 kcal Atomic # 8 Polarization: -66.95 SS G_CDS: -1.68 Total: -68.63 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -81.74 -1.23 -82.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211162756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.677 kcal (2) G-P(sol) polarization free energy of solvation -81.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds