Wall clock time and date at job start Wed Apr 1 2020 01:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99863 * 2 1 4 4 C 1.52999 * 109.46771 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47045 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46545 * 55.00186 * 5 4 3 7 7 C 1.53001 * 109.47062 * 295.00151 * 5 4 3 8 8 C 1.50702 * 109.47099 * 175.00164 * 5 4 3 9 9 O 1.21276 * 119.99862 * 359.97438 * 8 5 4 10 10 N 1.34770 * 119.99606 * 180.02562 * 8 5 4 11 11 C 1.46502 * 119.99871 * 179.97438 * 10 8 5 12 12 H 1.09002 * 110.27410 * 34.29629 * 11 10 8 13 13 C 1.53997 * 110.39204 * 272.15143 * 11 10 8 14 14 N 1.47904 * 107.05712 * 242.26562 * 13 11 10 15 15 C 1.46899 * 110.99783 * 214.15296 * 14 13 11 16 16 C 1.50693 * 109.47279 * 287.39780 * 15 14 13 17 17 O 1.21294 * 120.00613 * 359.97438 * 16 15 14 18 18 N 1.34782 * 120.00236 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00184 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99715 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99782 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00026 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47108 * 59.99969 * 23 21 19 25 25 H 1.48497 * 109.47434 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47317 * 300.00705 * 23 21 19 27 27 C 1.48528 * 105.82054 * 334.66803 * 14 13 11 28 28 C 1.54600 * 110.30933 * 156.38636 * 11 10 8 29 29 H 1.08994 * 110.72588 * 22.60990 * 28 11 10 30 30 C 1.52996 * 110.72068 * 259.32847 * 28 11 10 31 31 H 1.09001 * 109.47195 * 300.00192 * 1 2 3 32 32 H 1.09003 * 109.46809 * 59.99756 * 1 2 3 33 33 H 1.09000 * 109.47111 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47045 * 60.00002 * 3 2 1 35 35 H 1.08997 * 109.47072 * 299.99444 * 3 2 1 36 36 H 1.09002 * 109.47237 * 60.00239 * 4 3 2 37 37 H 1.08999 * 109.47157 * 300.00143 * 4 3 2 38 38 H 1.09001 * 109.47227 * 59.99735 * 7 5 4 39 39 H 1.08995 * 109.46871 * 179.97438 * 7 5 4 40 40 H 1.09004 * 109.46994 * 299.99997 * 7 5 4 41 41 H 0.97005 * 120.00508 * 359.97438 * 10 8 5 42 42 H 1.08998 * 109.91705 * 1.61781 * 13 11 10 43 43 H 1.08993 * 109.91821 * 122.90972 * 13 11 10 44 44 H 1.09005 * 109.46939 * 47.39696 * 15 14 13 45 45 H 1.09003 * 109.47125 * 167.39666 * 15 14 13 46 46 H 0.97003 * 119.99752 * 359.97438 * 18 16 15 47 47 H 0.96998 * 120.00203 * 180.02562 * 22 21 19 48 48 H 1.09004 * 110.66758 * 280.77502 * 27 14 13 49 49 H 1.08998 * 110.66622 * 157.64176 * 27 14 13 50 50 H 1.08999 * 109.47485 * 60.00237 * 30 28 11 51 51 H 1.09005 * 109.47239 * 180.02562 * 30 28 11 52 52 H 1.09001 * 109.47475 * 299.99599 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.7668 3.1545 0.8413 7 6 3.8088 3.2955 -1.3079 8 6 5.6551 2.4656 0.1244 9 8 6.1734 1.3722 0.2061 10 7 6.4181 3.5764 0.1460 11 6 7.8736 3.4630 0.2675 12 1 8.2276 2.5714 -0.2502 13 6 8.2865 3.4192 1.7504 14 7 9.1311 4.6072 2.0009 15 6 10.1780 4.3103 2.9878 16 6 9.5590 4.1921 4.3566 17 8 8.3634 4.3411 4.4966 18 7 10.3340 3.9219 5.4257 19 6 9.7709 3.8149 6.6711 20 1 8.7063 3.9476 6.7956 21 6 10.5699 3.5358 7.7731 22 7 11.8653 3.3748 7.6216 23 14 9.8029 3.3907 9.4701 24 1 8.7996 2.2959 9.4679 25 1 10.8612 3.0909 10.4678 26 1 9.1380 4.6706 9.8239 27 6 9.7242 4.9666 0.6875 28 6 8.5599 4.7242 -0.3056 29 1 7.8724 5.5700 -0.3078 30 6 9.0958 4.4565 -1.7134 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6886 1.8464 0.8900 35 1 1.6887 1.8464 -0.8900 36 1 3.8574 0.6436 -0.8891 37 1 3.8567 0.6439 0.8908 38 1 2.7258 3.3799 -1.3980 39 1 4.2518 4.2913 -1.3082 40 1 4.1998 2.7232 -2.1493 41 1 6.0035 4.4510 0.0810 42 1 7.4001 3.4535 2.3838 43 1 8.8544 2.5108 1.9511 44 1 10.6666 3.3712 2.7277 45 1 10.9139 5.1144 2.9899 46 1 11.2902 3.8031 5.3139 47 1 12.4230 3.1796 8.3908 48 1 10.5686 4.3172 0.4561 49 1 10.0280 6.0133 0.6760 50 1 8.2713 4.1758 -2.3688 51 1 9.5750 5.3572 -2.0972 52 1 9.8234 3.6457 -1.6772 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211162757.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:01 Heat of formation + Delta-G solvation = -123.987643 kcal Electronic energy + Delta-G solvation = -30233.825110 eV Core-core repulsion = 26040.060432 eV Total energy + Delta-G solvation = -4193.764677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.39534 -39.07549 -38.17897 -37.61947 -35.06216 -34.50540 -33.79229 -32.62130 -31.17418 -29.80787 -28.64835 -27.32466 -26.64261 -25.48979 -24.97687 -23.84833 -22.16058 -21.07255 -20.59348 -19.69576 -19.01394 -17.79345 -17.45676 -16.80100 -16.53950 -16.29519 -15.87896 -15.51776 -15.21484 -15.03081 -14.95164 -14.50980 -14.15793 -13.92216 -13.84499 -13.69402 -13.36239 -13.26778 -13.08819 -12.89469 -12.58849 -12.34673 -12.14945 -12.08166 -11.92295 -11.86824 -11.59150 -11.48246 -11.34345 -11.18656 -11.14801 -11.13215 -11.01279 -10.86351 -10.77980 -10.41186 -10.17432 -9.95328 -9.74379 -9.44591 -9.05188 -8.47269 -7.95719 -7.89689 -6.37394 -3.77950 2.60920 2.99157 3.23068 3.28174 3.32780 3.54551 3.95306 4.03937 4.26130 4.37088 4.45740 4.58338 4.65540 4.66942 4.88052 4.89812 4.91133 5.04347 5.08137 5.10030 5.14409 5.17191 5.28280 5.30025 5.33838 5.36781 5.40229 5.43759 5.49503 5.54015 5.64487 5.66930 5.76045 5.80650 5.83264 5.91398 5.93762 6.01408 6.06150 6.08546 6.30803 6.32936 6.61722 6.86764 7.14108 7.22201 7.46646 7.58909 8.10407 8.20025 8.66763 9.22647 9.59281 10.11656 10.80476 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.002497 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.412918 B =11211.727132 C =13853.876737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.060 3.940 4 C -0.101 4.101 5 C -0.109 4.109 6 H 0.101 0.899 7 C -0.146 4.146 8 C 0.519 3.481 9 O -0.536 6.536 10 N -0.716 5.716 11 C 0.138 3.862 12 H 0.094 0.906 13 C 0.035 3.965 14 N -0.490 5.490 15 C 0.036 3.964 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.037 3.963 28 C -0.099 4.099 29 H 0.089 0.911 30 C -0.142 4.142 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.401 0.599 42 H 0.095 0.905 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.089 0.911 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.046 0.954 49 H 0.085 0.915 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.279 1.567 -21.820 25.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.138 4.138 5 C -0.130 4.130 6 H 0.120 0.880 7 C -0.204 4.204 8 C 0.305 3.695 9 O -0.412 6.412 10 N -0.367 5.367 11 C 0.033 3.967 12 H 0.112 0.888 13 C -0.093 4.093 14 N -0.214 5.214 15 C -0.096 4.096 16 C 0.230 3.770 17 O -0.460 6.460 18 N -0.203 5.203 19 C -0.427 4.427 20 H 0.119 0.881 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.092 4.092 28 C -0.119 4.119 29 H 0.107 0.893 30 C -0.200 4.200 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.235 0.765 42 H 0.113 0.887 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.103 0.897 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.746 1.084 -21.283 25.359 hybrid contribution 0.477 -0.120 0.680 0.839 sum -13.269 0.964 -20.603 24.525 Atomic orbital electron populations 1.22741 0.81069 1.02787 0.99907 1.87897 1.19633 1.28061 1.95400 1.22622 0.94121 0.84677 1.00207 1.21276 0.92155 0.95361 1.05052 1.21217 0.92412 0.98615 1.00800 0.88049 1.21853 1.02359 1.00264 0.95887 1.20492 0.89060 0.84298 0.75654 1.90723 1.74806 1.26744 1.48956 1.46023 1.06930 1.09016 1.74766 1.21972 0.79715 0.98813 0.96227 0.88846 1.23295 0.99586 0.91604 0.94854 1.64493 1.18266 1.33131 1.05537 1.22087 0.93808 1.00648 0.93025 1.19720 0.87757 0.84224 0.85264 1.90505 1.14988 1.54990 1.85563 1.41852 1.09871 1.62302 1.06310 1.19631 0.95052 1.45178 0.82811 0.88061 1.25249 0.95289 0.97400 1.00078 1.69603 1.03955 1.48894 1.32026 0.85926 0.78308 0.78971 0.81056 1.19935 1.21000 1.19936 1.23334 0.95434 1.01613 0.88780 1.22323 0.97499 0.97337 0.94706 0.89310 1.21773 1.01062 1.01879 0.95240 0.94019 0.94180 0.89628 0.93175 0.93089 0.90409 0.89937 0.91378 0.91872 0.91864 0.76455 0.88665 0.93539 0.93137 0.89267 0.77543 0.91885 0.93531 0.89690 0.92434 0.92112 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.17 10.70 -35.23 -0.38 -4.54 16 3 C 0.06 0.52 5.69 37.16 0.21 0.74 16 4 C -0.10 -1.04 4.40 -26.73 -0.12 -1.16 16 5 C -0.11 -0.98 2.72 -91.77 -0.25 -1.23 16 6 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.15 -0.91 8.84 37.16 0.33 -0.59 16 8 C 0.52 6.52 7.15 -10.99 -0.08 6.45 16 9 O -0.54 -9.04 15.59 5.56 0.09 -8.95 16 10 N -0.72 -7.94 4.91 -52.49 -0.26 -8.20 16 11 C 0.14 1.75 2.89 -66.57 -0.19 1.55 16 12 H 0.09 1.27 7.31 -51.93 -0.38 0.89 16 13 C 0.04 0.60 5.66 -2.75 -0.02 0.58 16 14 N -0.49 -8.14 4.91 -231.89 -1.14 -9.28 16 15 C 0.04 0.66 5.27 -4.98 -0.03 0.63 16 16 C 0.45 10.80 7.61 -10.99 -0.08 10.71 16 17 O -0.58 -15.95 14.87 5.54 0.08 -15.87 16 18 N -0.57 -14.70 5.29 -10.96 -0.06 -14.76 16 19 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -25.01 13.05 55.50 0.72 -24.28 16 23 Si 0.93 21.50 29.55 -169.99 -5.02 16.48 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.04 0.44 5.96 -1.90 -0.01 0.43 16 28 C -0.10 -1.00 3.37 -88.76 -0.30 -1.30 16 29 H 0.09 0.83 7.75 -51.93 -0.40 0.42 16 30 C -0.14 -1.13 9.16 37.16 0.34 -0.79 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.35 6.56 -51.93 -0.34 0.01 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.05 7.95 -51.93 -0.41 0.63 16 38 H 0.07 0.34 6.56 -51.93 -0.34 0.00 16 39 H 0.06 0.32 7.57 -51.93 -0.39 -0.07 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.40 3.42 7.78 -40.82 -0.32 3.11 16 42 H 0.10 1.91 7.32 -51.93 -0.38 1.53 16 43 H 0.05 0.84 7.52 -51.93 -0.39 0.45 16 44 H 0.05 0.86 7.73 -51.93 -0.40 0.46 16 45 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 46 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 47 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 48 H 0.05 0.53 7.89 -51.93 -0.41 0.12 16 49 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 LS Contribution 418.06 15.07 6.30 6.30 Total: -1.00 -35.09 418.06 -8.05 -43.15 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -9.07 Total: 10.73 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 0.68 Total: 9.24 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.73 Total: -56.52 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.21 Total: -29.36 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.09 -8.05 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211162757.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.842 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds