Wall clock time and date at job start Wed Apr 1 2020 01:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99863 * 2 1 4 4 C 1.52999 * 109.46771 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47045 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46545 * 55.00186 * 5 4 3 7 7 C 1.53001 * 109.47062 * 295.00151 * 5 4 3 8 8 C 1.50702 * 109.47099 * 175.00164 * 5 4 3 9 9 O 1.21276 * 119.99862 * 359.97438 * 8 5 4 10 10 N 1.34770 * 119.99606 * 180.02562 * 8 5 4 11 11 C 1.46502 * 119.99871 * 179.97438 * 10 8 5 12 12 H 1.09002 * 110.27410 * 34.29629 * 11 10 8 13 13 C 1.53997 * 110.39204 * 272.15143 * 11 10 8 14 14 N 1.47904 * 107.05712 * 242.26562 * 13 11 10 15 15 C 1.46899 * 110.99783 * 214.15296 * 14 13 11 16 16 C 1.50693 * 109.47279 * 287.39780 * 15 14 13 17 17 O 1.21294 * 120.00613 * 359.97438 * 16 15 14 18 18 N 1.34782 * 120.00236 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00184 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99715 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99782 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00026 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47108 * 59.99969 * 23 21 19 25 25 H 1.48497 * 109.47434 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47317 * 300.00705 * 23 21 19 27 27 C 1.48528 * 105.82054 * 334.66803 * 14 13 11 28 28 C 1.54600 * 110.30933 * 156.38636 * 11 10 8 29 29 H 1.08994 * 110.72588 * 22.60990 * 28 11 10 30 30 C 1.52996 * 110.72068 * 259.32847 * 28 11 10 31 31 H 1.09001 * 109.47195 * 300.00192 * 1 2 3 32 32 H 1.09003 * 109.46809 * 59.99756 * 1 2 3 33 33 H 1.09000 * 109.47111 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47045 * 60.00002 * 3 2 1 35 35 H 1.08997 * 109.47072 * 299.99444 * 3 2 1 36 36 H 1.09002 * 109.47237 * 60.00239 * 4 3 2 37 37 H 1.08999 * 109.47157 * 300.00143 * 4 3 2 38 38 H 1.09001 * 109.47227 * 59.99735 * 7 5 4 39 39 H 1.08995 * 109.46871 * 179.97438 * 7 5 4 40 40 H 1.09004 * 109.46994 * 299.99997 * 7 5 4 41 41 H 0.97005 * 120.00508 * 359.97438 * 10 8 5 42 42 H 1.08998 * 109.91705 * 1.61781 * 13 11 10 43 43 H 1.08993 * 109.91821 * 122.90972 * 13 11 10 44 44 H 1.09005 * 109.46939 * 47.39696 * 15 14 13 45 45 H 1.09003 * 109.47125 * 167.39666 * 15 14 13 46 46 H 0.97003 * 119.99752 * 359.97438 * 18 16 15 47 47 H 0.96998 * 120.00203 * 180.02562 * 22 21 19 48 48 H 1.09004 * 110.66758 * 280.77502 * 27 14 13 49 49 H 1.08998 * 110.66622 * 157.64176 * 27 14 13 50 50 H 1.08999 * 109.47485 * 60.00237 * 30 28 11 51 51 H 1.09005 * 109.47239 * 180.02562 * 30 28 11 52 52 H 1.09001 * 109.47475 * 299.99599 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.7668 3.1545 0.8413 7 6 3.8088 3.2955 -1.3079 8 6 5.6551 2.4656 0.1244 9 8 6.1734 1.3722 0.2061 10 7 6.4181 3.5764 0.1460 11 6 7.8736 3.4630 0.2675 12 1 8.2276 2.5714 -0.2502 13 6 8.2865 3.4192 1.7504 14 7 9.1311 4.6072 2.0009 15 6 10.1780 4.3103 2.9878 16 6 9.5590 4.1921 4.3566 17 8 8.3634 4.3411 4.4966 18 7 10.3340 3.9219 5.4257 19 6 9.7709 3.8149 6.6711 20 1 8.7063 3.9476 6.7956 21 6 10.5699 3.5358 7.7731 22 7 11.8653 3.3748 7.6216 23 14 9.8029 3.3907 9.4701 24 1 8.7996 2.2959 9.4679 25 1 10.8612 3.0909 10.4678 26 1 9.1380 4.6706 9.8239 27 6 9.7242 4.9666 0.6875 28 6 8.5599 4.7242 -0.3056 29 1 7.8724 5.5700 -0.3078 30 6 9.0958 4.4565 -1.7134 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6886 1.8464 0.8900 35 1 1.6887 1.8464 -0.8900 36 1 3.8574 0.6436 -0.8891 37 1 3.8567 0.6439 0.8908 38 1 2.7258 3.3799 -1.3980 39 1 4.2518 4.2913 -1.3082 40 1 4.1998 2.7232 -2.1493 41 1 6.0035 4.4510 0.0810 42 1 7.4001 3.4535 2.3838 43 1 8.8544 2.5108 1.9511 44 1 10.6666 3.3712 2.7277 45 1 10.9139 5.1144 2.9899 46 1 11.2902 3.8031 5.3139 47 1 12.4230 3.1796 8.3908 48 1 10.5686 4.3172 0.4561 49 1 10.0280 6.0133 0.6760 50 1 8.2713 4.1758 -2.3688 51 1 9.5750 5.3572 -2.0972 52 1 9.8234 3.6457 -1.6772 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211162757.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:01 Heat of formation + Delta-G solvation = -151.932173 kcal Electronic energy + Delta-G solvation = -30235.036875 eV Core-core repulsion = 26040.060432 eV Total energy + Delta-G solvation = -4194.976443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45817 -40.43484 -39.36916 -38.82532 -36.07522 -35.87799 -35.47301 -33.65596 -33.24353 -30.65714 -29.76248 -28.57791 -27.22513 -26.83746 -26.06162 -25.11588 -23.20420 -22.04463 -21.77516 -20.87539 -20.55050 -19.85590 -18.34615 -17.87852 -17.62575 -17.27904 -17.00196 -16.75747 -16.53308 -16.30388 -16.10979 -15.77980 -15.53679 -15.37973 -15.02027 -14.81357 -14.52359 -14.17895 -14.06094 -13.95483 -13.57150 -13.55076 -13.34182 -13.27935 -13.05868 -12.95039 -12.75581 -12.60143 -12.48075 -12.45230 -12.27630 -12.20192 -12.14287 -11.92348 -11.89741 -11.85220 -11.67096 -11.50396 -10.81103 -10.58050 -10.35860 -10.11783 -10.02330 -9.36260 -8.47918 -5.96726 1.37722 1.38971 1.50279 1.60338 2.03926 2.09652 2.26979 2.78307 2.87310 3.17854 3.29816 3.54362 3.62546 3.64937 3.87454 3.98701 4.00992 4.18013 4.23147 4.27750 4.30371 4.32703 4.41339 4.43620 4.46581 4.49621 4.54998 4.56455 4.58087 4.67335 4.82175 4.84391 4.85487 4.90079 4.92158 4.94311 5.00355 5.06014 5.19720 5.22875 5.33171 5.36212 5.38568 5.54798 5.79540 5.91599 6.06666 6.24699 6.54252 6.59248 7.11334 7.24342 7.54676 8.11054 8.69398 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.002497 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.412918 B =11211.727132 C =13853.876737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.425 6.425 3 C 0.063 3.937 4 C -0.098 4.098 5 C -0.101 4.101 6 H 0.116 0.884 7 C -0.140 4.140 8 C 0.512 3.488 9 O -0.588 6.588 10 N -0.704 5.704 11 C 0.145 3.855 12 H 0.083 0.917 13 C 0.040 3.960 14 N -0.507 5.507 15 C 0.048 3.952 16 C 0.439 3.561 17 O -0.616 6.616 18 N -0.576 5.576 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.268 1.268 26 H -0.270 1.270 27 C 0.035 3.965 28 C -0.084 4.084 29 H 0.104 0.896 30 C -0.136 4.136 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.416 0.584 42 H 0.053 0.947 43 H 0.022 0.978 44 H 0.064 0.936 45 H 0.117 0.883 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.058 0.942 49 H 0.105 0.895 50 H 0.064 0.936 51 H 0.080 0.920 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.727 3.478 -23.525 27.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.345 6.345 3 C -0.013 4.013 4 C -0.136 4.136 5 C -0.122 4.122 6 H 0.134 0.866 7 C -0.197 4.197 8 C 0.300 3.700 9 O -0.467 6.467 10 N -0.356 5.356 11 C 0.039 3.961 12 H 0.101 0.899 13 C -0.090 4.090 14 N -0.231 5.231 15 C -0.084 4.084 16 C 0.227 3.773 17 O -0.502 6.502 18 N -0.213 5.213 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.200 1.200 25 H -0.193 1.193 26 H -0.195 1.195 27 C -0.092 4.092 28 C -0.104 4.104 29 H 0.122 0.878 30 C -0.193 4.193 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.082 0.918 45 H 0.135 0.865 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.123 0.877 50 H 0.083 0.917 51 H 0.099 0.901 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.184 3.038 -23.019 27.208 hybrid contribution 0.610 -0.734 1.211 1.542 sum -13.574 2.304 -21.808 25.790 Atomic orbital electron populations 1.22928 0.79313 1.03723 1.01089 1.87851 1.21697 1.29273 1.95668 1.22650 0.92416 0.84416 1.01832 1.21213 0.93974 0.95788 1.02653 1.21227 0.89401 0.98309 1.03277 0.86610 1.21864 1.03882 1.00533 0.93469 1.21229 0.90691 0.83716 0.74389 1.90698 1.75999 1.28717 1.51334 1.45931 1.06374 1.09562 1.73719 1.21828 0.80818 1.00173 0.93285 0.89855 1.23134 0.97857 0.90931 0.97053 1.64413 1.18453 1.32564 1.07666 1.21958 0.94207 1.02427 0.89780 1.20824 0.87331 0.82121 0.87057 1.90474 1.16910 1.56222 1.86613 1.41930 1.10153 1.62953 1.06291 1.19593 0.94383 1.47607 0.84668 0.90547 1.26049 0.95768 0.96302 1.03269 1.69665 1.04696 1.48476 1.33304 0.84995 0.77810 0.78876 0.76687 1.19972 1.19281 1.19513 1.23519 0.96349 1.02870 0.86446 1.22314 0.96687 0.96022 0.95353 0.87754 1.21739 1.01288 1.02743 0.93551 0.93274 0.92471 0.88988 0.92279 0.90486 0.91774 0.93463 0.89261 0.90014 0.92391 0.74638 0.92839 0.95995 0.91789 0.86514 0.77056 0.91281 0.92363 0.87729 0.91732 0.90068 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.99 10.70 -148.98 -1.59 -10.58 16 3 C 0.06 1.04 5.69 71.98 0.41 1.45 16 4 C -0.10 -2.12 4.40 30.60 0.13 -1.98 16 5 C -0.10 -1.77 2.72 -11.54 -0.03 -1.80 16 6 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 7 C -0.14 -1.40 8.84 71.98 0.64 -0.77 16 8 C 0.51 13.21 7.15 87.66 0.63 13.84 16 9 O -0.59 -21.15 15.59 -3.02 -0.05 -21.20 16 10 N -0.70 -15.32 4.91 -438.37 -2.15 -17.48 16 11 C 0.15 3.64 2.89 45.87 0.13 3.77 16 12 H 0.08 2.30 7.31 -2.39 -0.02 2.28 16 13 C 0.04 1.39 5.66 86.45 0.49 1.88 16 14 N -0.51 -16.60 4.91 -887.58 -4.36 -20.96 16 15 C 0.05 1.73 5.27 85.55 0.45 2.19 16 16 C 0.44 21.97 7.61 87.65 0.67 22.64 16 17 O -0.62 -35.62 14.87 -3.07 -0.05 -35.66 16 18 N -0.58 -30.78 5.29 -306.98 -1.62 -32.40 16 19 C -0.33 -19.58 9.68 84.04 0.81 -18.76 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 22 N -0.92 -50.94 13.05 21.66 0.28 -50.66 16 23 Si 0.99 44.22 29.55 68.60 2.03 46.25 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 27 C 0.04 0.76 5.96 86.65 0.52 1.28 16 28 C -0.08 -1.49 3.37 -9.59 -0.03 -1.52 16 29 H 0.10 1.56 7.75 -2.39 -0.02 1.54 16 30 C -0.14 -1.72 9.16 71.98 0.66 -1.06 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.87 6.56 -2.39 -0.02 0.85 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.32 7.95 -2.39 -0.02 1.30 16 38 H 0.09 0.56 6.56 -2.39 -0.02 0.54 16 39 H 0.08 0.54 7.57 -2.39 -0.02 0.52 16 40 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.42 6.37 7.78 -92.70 -0.72 5.65 16 42 H 0.05 2.30 7.32 -2.39 -0.02 2.28 16 43 H 0.02 0.85 7.52 -2.39 -0.02 0.83 16 44 H 0.06 2.16 7.73 -2.38 -0.02 2.14 16 45 H 0.12 3.59 8.08 -2.39 -0.02 3.57 16 46 H 0.40 20.04 7.90 -92.71 -0.73 19.31 16 47 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 48 H 0.06 1.15 7.89 -2.39 -0.02 1.13 16 49 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 52 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 Total: -1.00 -81.26 418.06 -0.86 -82.12 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: -0.53 Total: 38.15 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 7.19 Total: 22.41 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -7.85 Total: -121.50 kcal Atomic # 8 Polarization: -65.75 SS G_CDS: -1.69 Total: -67.44 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -81.26 -0.86 -82.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211162757.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.813 kcal (2) G-P(sol) polarization free energy of solvation -81.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds