Wall clock time and date at job start Wed Apr 1 2020 00:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47112 * 2 1 4 4 O 1.21272 * 120.00291 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99950 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00401 * 179.97438 * 5 3 2 7 7 H 1.09005 * 110.64038 * 31.84688 * 6 5 3 8 8 C 1.54929 * 110.87739 * 268.59083 * 6 5 3 9 9 N 1.48532 * 103.22929 * 204.15108 * 8 6 5 10 10 C 1.46906 * 111.00161 * 159.71924 * 9 8 6 11 11 C 1.50693 * 109.46823 * 59.25456 * 10 9 8 12 12 O 1.21281 * 120.00626 * 6.14165 * 11 10 9 13 13 N 1.34779 * 119.99879 * 186.13267 * 11 10 9 14 14 C 1.46503 * 119.99963 * 0.02562 * 13 11 10 15 15 C 1.52999 * 109.47237 * 89.99336 * 14 13 11 16 16 C 1.46494 * 120.00294 * 180.02562 * 13 11 10 17 17 C 1.50693 * 109.47128 * 90.00404 * 16 13 11 18 18 H 1.08004 * 120.00422 * 0.02562 * 17 16 13 19 19 C 1.37880 * 120.00232 * 180.02562 * 17 16 13 20 20 N 1.31516 * 120.00161 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99973 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47098 * 89.99909 * 21 19 17 23 23 H 1.48499 * 109.47296 * 209.99662 * 21 19 17 24 24 H 1.48500 * 109.47477 * 329.99742 * 21 19 17 25 25 C 1.47906 * 105.81558 * 39.20863 * 9 8 6 26 26 C 1.53994 * 107.05839 * 334.66637 * 25 9 8 27 27 H 1.09000 * 110.30546 * 120.14248 * 26 25 9 28 28 O 1.42899 * 110.31232 * 242.30948 * 26 25 9 29 29 C 1.42901 * 113.99851 * 268.55206 * 28 26 25 30 30 H 1.08997 * 109.46862 * 59.99999 * 1 2 3 31 31 H 1.08998 * 109.47184 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46827 * 299.99641 * 1 2 3 33 33 H 1.09005 * 109.46894 * 240.00366 * 2 1 3 34 34 H 1.08994 * 109.47166 * 120.00429 * 2 1 3 35 35 H 0.97004 * 119.99757 * 359.97438 * 5 3 2 36 36 H 1.08999 * 110.67256 * 85.71864 * 8 6 5 37 37 H 1.09004 * 110.66713 * 322.58883 * 8 6 5 38 38 H 1.08995 * 109.46547 * 179.25729 * 10 9 8 39 39 H 1.09003 * 109.47105 * 299.25330 * 10 9 8 40 40 H 1.09004 * 109.46910 * 209.99810 * 14 13 11 41 41 H 1.09003 * 109.46937 * 329.99388 * 14 13 11 42 42 H 1.08998 * 109.47333 * 299.99718 * 15 14 13 43 43 H 1.08995 * 109.47465 * 60.00107 * 15 14 13 44 44 H 1.08999 * 109.46992 * 179.97438 * 15 14 13 45 45 H 1.08996 * 109.47578 * 210.00600 * 16 13 11 46 46 H 1.09007 * 109.47410 * 330.00820 * 16 13 11 47 47 H 0.96991 * 119.99800 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.91795 * 94.02491 * 25 9 8 49 49 H 1.09001 * 109.91374 * 215.31269 * 25 9 8 50 50 H 1.08996 * 109.47251 * 59.99751 * 29 28 26 51 51 H 1.08998 * 109.46558 * 179.97438 * 29 28 26 52 52 H 1.09000 * 109.46748 * 299.99090 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8459 3.0482 -0.0011 7 1 3.1572 3.6996 0.5372 8 6 4.0630 3.5565 -1.4484 9 7 5.0685 4.6370 -1.2820 10 6 5.7552 4.9170 -2.5501 11 6 4.7444 5.3327 -3.5875 12 8 3.5849 5.4981 -3.2726 13 7 5.1288 5.5210 -4.8656 14 6 6.5293 5.3208 -5.2462 15 6 6.7407 3.8648 -5.6659 16 6 4.1464 5.9256 -5.8740 17 6 4.0816 7.4299 -5.9370 18 1 4.7097 8.0250 -5.2907 19 6 3.2203 8.0465 -6.8196 20 7 2.4549 7.3219 -7.6063 21 14 3.1406 9.9112 -6.8981 22 1 4.1222 10.4071 -7.8961 23 1 1.7735 10.3318 -7.2972 24 1 3.4627 10.4771 -5.5635 25 6 6.0201 4.1483 -0.2606 26 6 5.2639 3.1273 0.6096 27 1 5.7517 2.1538 0.5606 28 8 5.1966 3.5821 1.9626 29 6 6.2764 3.1298 2.7821 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.9878 0.9297 -0.0005 36 1 3.1354 3.9544 -1.8598 37 1 4.4552 2.7601 -2.0811 38 1 6.4764 5.7209 -2.4028 39 1 6.2747 4.0202 -2.8878 40 1 6.7769 5.9788 -6.0793 41 1 7.1731 5.5515 -4.3974 42 1 6.4932 3.2069 -4.8328 43 1 6.0970 3.6341 -6.5147 44 1 7.7826 3.7161 -5.9495 45 1 4.4420 5.5337 -6.8472 46 1 3.1664 5.5307 -5.6057 47 1 1.8494 7.7558 -8.2274 48 1 6.8696 3.6666 -0.7448 49 1 6.3628 4.9796 0.3555 50 1 7.2200 3.4866 2.3693 51 1 6.1525 3.5180 3.7930 52 1 6.2804 2.0401 2.8089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211738545.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:35 Heat of formation + Delta-G solvation = -102.890732 kcal Electronic energy + Delta-G solvation = -31239.275104 eV Core-core repulsion = 27046.425258 eV Total energy + Delta-G solvation = -4192.849847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.46198 -39.36129 -38.63908 -36.81428 -35.22712 -34.52519 -32.97822 -32.76147 -30.75839 -30.07800 -28.40669 -27.84224 -26.75513 -25.68738 -24.33408 -23.02682 -22.50855 -21.28734 -21.13601 -20.44248 -18.37086 -17.66543 -17.02560 -16.58926 -16.46919 -16.27816 -15.77580 -15.47074 -15.36493 -15.24969 -14.75774 -14.42800 -14.28923 -13.95005 -13.76934 -13.48869 -13.41248 -13.26936 -12.88338 -12.55285 -12.54451 -12.39704 -12.18985 -12.01201 -11.92916 -11.86459 -11.76240 -11.65784 -11.34918 -11.30717 -11.14791 -10.88519 -10.85662 -10.73237 -10.49988 -10.11222 -10.08019 -9.86166 -9.58243 -9.20401 -8.83108 -8.39151 -8.32415 -7.61488 -5.99944 -4.04289 2.56060 2.85287 3.33693 3.40530 3.42388 3.45306 3.48763 3.69130 4.20080 4.31074 4.48324 4.50402 4.59303 4.66420 4.86002 4.88348 4.95540 5.02480 5.03864 5.15167 5.21393 5.27039 5.28625 5.31077 5.34917 5.38405 5.40253 5.56275 5.58947 5.63433 5.67828 5.73617 5.75422 5.91553 5.98570 6.06943 6.20153 6.22662 6.32325 6.43701 6.80439 6.84477 6.94740 7.13768 7.31267 7.48639 7.59584 7.96906 8.13769 8.28191 8.45802 8.95562 9.16059 9.60869 11.08186 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010458 B = 0.002923 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.645393 B = 9578.170214 C =10711.015796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.142 4.142 3 C 0.510 3.490 4 O -0.525 6.525 5 N -0.727 5.727 6 C 0.144 3.856 7 H 0.118 0.882 8 C 0.031 3.969 9 N -0.488 5.488 10 C 0.029 3.971 11 C 0.504 3.496 12 O -0.519 6.519 13 N -0.599 5.599 14 C 0.107 3.893 15 C -0.168 4.168 16 C 0.248 3.752 17 C -0.525 4.525 18 H 0.057 0.943 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.016 3.984 26 C 0.075 3.925 27 H 0.071 0.929 28 O -0.370 6.370 29 C 0.029 3.971 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.396 0.604 36 H 0.117 0.883 37 H 0.042 0.958 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.263 0.737 48 H 0.051 0.949 49 H 0.093 0.907 50 H 0.043 0.957 51 H 0.087 0.913 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.400 -18.161 16.541 27.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.296 3.704 4 O -0.400 6.400 5 N -0.379 5.379 6 C 0.038 3.962 7 H 0.136 0.864 8 C -0.098 4.098 9 N -0.213 5.213 10 C -0.103 4.103 11 C 0.290 3.710 12 O -0.395 6.395 13 N -0.333 5.333 14 C -0.018 4.018 15 C -0.227 4.227 16 C 0.129 3.871 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.725 3.275 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.113 4.113 26 C 0.016 3.984 27 H 0.089 0.911 28 O -0.288 6.288 29 C -0.067 4.067 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.230 0.770 36 H 0.135 0.865 37 H 0.060 0.940 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.112 0.888 50 H 0.061 0.939 51 H 0.105 0.895 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.635 -16.760 16.783 25.601 hybrid contribution 1.267 -0.226 -0.587 1.415 sum 10.902 -16.986 16.196 25.878 Atomic orbital electron populations 1.21541 0.92865 1.01532 1.03702 1.21627 0.98904 0.93597 1.04116 1.20827 0.81938 0.92003 0.75586 1.90770 1.54979 1.46428 1.47800 1.45971 1.07460 1.07861 1.76614 1.21927 0.94593 0.83450 0.96228 0.86422 1.23721 0.99225 0.92094 0.94724 1.64526 1.11592 1.38730 1.06468 1.22341 0.96595 1.01506 0.89840 1.20054 0.89130 0.78904 0.82954 1.90677 1.19163 1.50280 1.79370 1.48257 1.09381 1.66654 1.08962 1.21394 0.83394 0.96121 1.00863 1.22222 1.01330 0.97330 1.01786 1.19240 0.87623 0.95147 0.85058 1.21439 1.22737 0.91597 1.20584 0.92470 1.24934 0.95170 0.98544 0.95471 1.69930 1.24724 1.35372 1.23441 0.86501 0.77296 0.85376 0.78286 1.20733 1.21099 1.19825 1.23439 0.94557 0.98408 0.94905 1.23206 0.96009 0.96284 0.82945 0.91115 1.88049 1.46886 1.73987 1.19917 1.22817 0.89931 0.98445 0.95555 0.91660 0.92136 0.91935 0.88927 0.89116 0.76983 0.86498 0.93970 0.88087 0.92574 0.89866 0.91947 0.93432 0.91974 0.92208 0.95152 0.93940 0.92765 0.93080 0.88836 0.93883 0.89456 0.94198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.20 37.16 0.34 -0.90 16 2 C -0.14 -1.12 6.42 -27.88 -0.18 -1.30 16 3 C 0.51 6.24 7.83 -10.99 -0.09 6.16 16 4 O -0.53 -9.17 15.63 5.56 0.09 -9.08 16 5 N -0.73 -7.44 5.18 -52.01 -0.27 -7.71 16 6 C 0.14 1.87 3.16 -66.08 -0.21 1.66 16 7 H 0.12 1.95 7.49 -51.93 -0.39 1.56 16 8 C 0.03 0.48 5.28 -1.90 -0.01 0.47 16 9 N -0.49 -7.48 5.11 -231.89 -1.18 -8.66 16 10 C 0.03 0.43 3.77 -4.98 -0.02 0.42 16 11 C 0.50 10.60 7.31 -10.99 -0.08 10.52 16 12 O -0.52 -13.40 13.88 5.56 0.08 -13.33 16 13 N -0.60 -12.65 2.46 -175.06 -0.43 -13.08 16 14 C 0.11 1.67 5.85 -4.04 -0.02 1.65 16 15 C -0.17 -2.17 10.18 37.16 0.38 -1.80 16 16 C 0.25 6.56 5.16 -5.20 -0.03 6.53 16 17 C -0.52 -15.13 9.39 -34.44 -0.32 -15.46 16 18 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 21 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.02 0.17 6.51 -2.75 -0.02 0.16 16 26 C 0.07 0.76 3.19 -25.38 -0.08 0.68 16 27 H 0.07 0.52 7.46 -51.93 -0.39 0.13 16 28 O -0.37 -4.12 10.29 -35.23 -0.36 -4.48 16 29 C 0.03 0.20 10.87 101.05 1.10 1.30 16 30 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.40 2.55 8.39 -40.82 -0.34 2.21 16 36 H 0.12 2.38 6.43 -51.93 -0.33 2.04 16 37 H 0.04 0.59 8.01 -51.93 -0.42 0.18 16 38 H 0.10 1.39 7.71 -51.93 -0.40 0.99 16 39 H 0.06 0.71 6.70 -51.93 -0.35 0.36 16 40 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 41 H 0.06 0.80 6.61 -51.93 -0.34 0.46 16 42 H 0.05 0.58 7.12 -51.93 -0.37 0.21 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 46 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.05 0.45 7.68 -51.93 -0.40 0.05 16 49 H 0.09 1.05 7.96 -51.93 -0.41 0.64 16 50 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 51 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.04 0.22 8.10 -51.93 -0.42 -0.20 16 LS Contribution 418.80 15.07 6.31 6.31 Total: -1.00 -37.65 418.80 -8.52 -46.18 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -9.13 Total: 1.08 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 0.67 Total: 11.76 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -1.15 Total: -55.79 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.20 Total: -26.89 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -37.65 -8.52 -46.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211738545.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.714 kcal (2) G-P(sol) polarization free energy of solvation -37.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds