Wall clock time and date at job start Wed Apr 1 2020 00:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47112 * 2 1 4 4 O 1.21272 * 120.00291 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99950 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00401 * 179.97438 * 5 3 2 7 7 H 1.09005 * 110.64038 * 31.84688 * 6 5 3 8 8 C 1.54929 * 110.87739 * 268.59083 * 6 5 3 9 9 N 1.48532 * 103.22929 * 204.15108 * 8 6 5 10 10 C 1.46906 * 111.00161 * 159.71924 * 9 8 6 11 11 C 1.50693 * 109.46823 * 59.25456 * 10 9 8 12 12 O 1.21281 * 120.00626 * 6.14165 * 11 10 9 13 13 N 1.34779 * 119.99879 * 186.13267 * 11 10 9 14 14 C 1.46503 * 119.99963 * 0.02562 * 13 11 10 15 15 C 1.52999 * 109.47237 * 89.99336 * 14 13 11 16 16 C 1.46494 * 120.00294 * 180.02562 * 13 11 10 17 17 C 1.50693 * 109.47128 * 90.00404 * 16 13 11 18 18 H 1.08004 * 120.00422 * 0.02562 * 17 16 13 19 19 C 1.37880 * 120.00232 * 180.02562 * 17 16 13 20 20 N 1.31516 * 120.00161 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99973 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47098 * 89.99909 * 21 19 17 23 23 H 1.48499 * 109.47296 * 209.99662 * 21 19 17 24 24 H 1.48500 * 109.47477 * 329.99742 * 21 19 17 25 25 C 1.47906 * 105.81558 * 39.20863 * 9 8 6 26 26 C 1.53994 * 107.05839 * 334.66637 * 25 9 8 27 27 H 1.09000 * 110.30546 * 120.14248 * 26 25 9 28 28 O 1.42899 * 110.31232 * 242.30948 * 26 25 9 29 29 C 1.42901 * 113.99851 * 268.55206 * 28 26 25 30 30 H 1.08997 * 109.46862 * 59.99999 * 1 2 3 31 31 H 1.08998 * 109.47184 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46827 * 299.99641 * 1 2 3 33 33 H 1.09005 * 109.46894 * 240.00366 * 2 1 3 34 34 H 1.08994 * 109.47166 * 120.00429 * 2 1 3 35 35 H 0.97004 * 119.99757 * 359.97438 * 5 3 2 36 36 H 1.08999 * 110.67256 * 85.71864 * 8 6 5 37 37 H 1.09004 * 110.66713 * 322.58883 * 8 6 5 38 38 H 1.08995 * 109.46547 * 179.25729 * 10 9 8 39 39 H 1.09003 * 109.47105 * 299.25330 * 10 9 8 40 40 H 1.09004 * 109.46910 * 209.99810 * 14 13 11 41 41 H 1.09003 * 109.46937 * 329.99388 * 14 13 11 42 42 H 1.08998 * 109.47333 * 299.99718 * 15 14 13 43 43 H 1.08995 * 109.47465 * 60.00107 * 15 14 13 44 44 H 1.08999 * 109.46992 * 179.97438 * 15 14 13 45 45 H 1.08996 * 109.47578 * 210.00600 * 16 13 11 46 46 H 1.09007 * 109.47410 * 330.00820 * 16 13 11 47 47 H 0.96991 * 119.99800 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.91795 * 94.02491 * 25 9 8 49 49 H 1.09001 * 109.91374 * 215.31269 * 25 9 8 50 50 H 1.08996 * 109.47251 * 59.99751 * 29 28 26 51 51 H 1.08998 * 109.46558 * 179.97438 * 29 28 26 52 52 H 1.09000 * 109.46748 * 299.99090 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8459 3.0482 -0.0011 7 1 3.1572 3.6996 0.5372 8 6 4.0630 3.5565 -1.4484 9 7 5.0685 4.6370 -1.2820 10 6 5.7552 4.9170 -2.5501 11 6 4.7444 5.3327 -3.5875 12 8 3.5849 5.4981 -3.2726 13 7 5.1288 5.5210 -4.8656 14 6 6.5293 5.3208 -5.2462 15 6 6.7407 3.8648 -5.6659 16 6 4.1464 5.9256 -5.8740 17 6 4.0816 7.4299 -5.9370 18 1 4.7097 8.0250 -5.2907 19 6 3.2203 8.0465 -6.8196 20 7 2.4549 7.3219 -7.6063 21 14 3.1406 9.9112 -6.8981 22 1 4.1222 10.4071 -7.8961 23 1 1.7735 10.3318 -7.2972 24 1 3.4627 10.4771 -5.5635 25 6 6.0201 4.1483 -0.2606 26 6 5.2639 3.1273 0.6096 27 1 5.7517 2.1538 0.5606 28 8 5.1966 3.5821 1.9626 29 6 6.2764 3.1298 2.7821 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.9878 0.9297 -0.0005 36 1 3.1354 3.9544 -1.8598 37 1 4.4552 2.7601 -2.0811 38 1 6.4764 5.7209 -2.4028 39 1 6.2747 4.0202 -2.8878 40 1 6.7769 5.9788 -6.0793 41 1 7.1731 5.5515 -4.3974 42 1 6.4932 3.2069 -4.8328 43 1 6.0970 3.6341 -6.5147 44 1 7.7826 3.7161 -5.9495 45 1 4.4420 5.5337 -6.8472 46 1 3.1664 5.5307 -5.6057 47 1 1.8494 7.7558 -8.2274 48 1 6.8696 3.6666 -0.7448 49 1 6.3628 4.9796 0.3555 50 1 7.2200 3.4866 2.3693 51 1 6.1525 3.5180 3.7930 52 1 6.2804 2.0401 2.8089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211738545.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:34 Heat of formation + Delta-G solvation = -134.221621 kcal Electronic energy + Delta-G solvation = -31240.633714 eV Core-core repulsion = 27046.425258 eV Total energy + Delta-G solvation = -4194.208456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52833 -40.69917 -39.76081 -37.79667 -36.86603 -35.61375 -34.90951 -33.75257 -31.95600 -31.46298 -29.43942 -29.37453 -27.76778 -26.84701 -25.34291 -24.64487 -23.93782 -22.44463 -22.06615 -21.35516 -19.92938 -18.66274 -18.54644 -17.96469 -17.87329 -17.42244 -17.05855 -16.71028 -16.46731 -16.26144 -16.01509 -15.83652 -15.35827 -15.15344 -14.99570 -14.69852 -14.53128 -14.34718 -14.25610 -13.91890 -13.66255 -13.45522 -13.29996 -13.20605 -13.18100 -13.04911 -12.82081 -12.72354 -12.67808 -12.67563 -12.49757 -12.33668 -12.15091 -12.04605 -11.88733 -11.79790 -11.71473 -11.02636 -10.72747 -10.65587 -10.49691 -10.14954 -9.50474 -9.33876 -8.23822 -6.38607 1.33458 1.37812 1.47885 1.61171 1.85202 1.97911 2.22897 2.39793 2.74711 3.05102 3.06362 3.38538 3.56205 3.73356 3.79579 3.89663 4.08849 4.10596 4.19250 4.21707 4.24805 4.29436 4.38967 4.43154 4.49166 4.56342 4.62546 4.63414 4.67470 4.81533 4.88957 4.92556 4.92689 4.94940 4.97401 5.01878 5.04453 5.04479 5.20352 5.28271 5.37759 5.38758 5.57249 5.72796 5.83893 5.92504 6.06027 6.25534 6.50586 6.69874 6.82594 7.26984 7.28035 7.53938 8.83156 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010458 B = 0.002923 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.645393 B = 9578.170214 C =10711.015796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.499 3.501 4 O -0.592 6.592 5 N -0.708 5.708 6 C 0.147 3.853 7 H 0.069 0.931 8 C 0.040 3.960 9 N -0.522 5.522 10 C 0.045 3.955 11 C 0.491 3.509 12 O -0.583 6.583 13 N -0.605 5.605 14 C 0.098 3.902 15 C -0.159 4.159 16 C 0.266 3.734 17 C -0.542 4.542 18 H 0.052 0.948 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.968 3.032 22 H -0.259 1.259 23 H -0.282 1.282 24 H -0.275 1.275 25 C 0.018 3.982 26 C 0.088 3.912 27 H 0.115 0.885 28 O -0.402 6.402 29 C 0.022 3.978 30 H 0.035 0.965 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.420 0.580 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.035 0.965 44 H 0.098 0.902 45 H 0.022 0.978 46 H -0.010 1.010 47 H 0.267 0.733 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.058 0.942 51 H 0.090 0.910 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.782 -20.138 17.845 31.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.288 3.712 4 O -0.472 6.472 5 N -0.361 5.361 6 C 0.040 3.960 7 H 0.087 0.913 8 C -0.089 4.089 9 N -0.248 5.248 10 C -0.085 4.085 11 C 0.279 3.721 12 O -0.463 6.463 13 N -0.337 5.337 14 C -0.024 4.024 15 C -0.217 4.217 16 C 0.144 3.856 17 C -0.580 4.580 18 H 0.070 0.930 19 C -0.193 4.193 20 N -0.569 5.569 21 Si 0.792 3.208 22 H -0.184 1.184 23 H -0.207 1.207 24 H -0.200 1.200 25 C -0.109 4.109 26 C 0.029 3.971 27 H 0.133 0.867 28 O -0.321 6.321 29 C -0.073 4.073 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.259 0.741 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.143 0.857 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.117 0.883 45 H 0.040 0.960 46 H 0.008 0.992 47 H 0.076 0.924 48 H 0.110 0.890 49 H 0.110 0.890 50 H 0.077 0.923 51 H 0.109 0.891 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.128 -18.795 18.094 29.669 hybrid contribution -0.113 0.372 -0.965 1.040 sum 14.015 -18.423 17.129 28.796 Atomic orbital electron populations 1.21565 0.94142 1.02720 1.01484 1.21696 0.97714 0.90570 1.07101 1.21815 0.82012 0.93347 0.74056 1.90751 1.56714 1.48803 1.50887 1.45794 1.07460 1.07564 1.75330 1.21589 0.95867 0.84023 0.94518 0.91302 1.23376 0.96991 0.92343 0.96210 1.64365 1.13234 1.39825 1.07396 1.22266 0.94563 1.03774 0.87933 1.21252 0.89611 0.77570 0.83631 1.90668 1.22326 1.52824 1.80455 1.48292 1.10826 1.66272 1.08327 1.21773 0.80443 0.97990 1.02172 1.22148 1.03173 0.95192 1.01222 1.18624 0.86979 0.93953 0.86034 1.21722 1.22962 0.92795 1.20559 0.92957 1.25881 0.94612 1.03813 0.94995 1.70054 1.25302 1.37514 1.24055 0.85414 0.77813 0.79047 0.78528 1.18402 1.20739 1.19968 1.23540 0.94646 0.98943 0.93791 1.23136 0.93344 0.98104 0.82549 0.86737 1.88025 1.48843 1.74749 1.20462 1.23046 0.89312 0.99828 0.95159 0.94546 0.89045 0.93656 0.86199 0.85363 0.74134 0.92987 0.92287 0.85707 0.88543 0.91050 0.87923 0.92153 0.94569 0.88333 0.96013 0.99192 0.92447 0.89035 0.88973 0.92341 0.89145 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.20 71.98 0.66 -1.88 16 2 C -0.13 -1.84 6.42 29.85 0.19 -1.64 16 3 C 0.50 12.51 7.83 87.66 0.69 13.19 16 4 O -0.59 -22.76 15.63 -3.00 -0.05 -22.81 16 5 N -0.71 -13.83 5.18 -436.86 -2.26 -16.09 16 6 C 0.15 3.88 3.16 46.19 0.15 4.03 16 7 H 0.07 2.51 7.49 -2.38 -0.02 2.50 16 8 C 0.04 1.28 5.28 86.65 0.46 1.74 16 9 N -0.52 -15.60 5.11 -887.58 -4.54 -20.14 16 10 C 0.05 1.28 3.77 85.55 0.32 1.60 16 11 C 0.49 21.22 7.31 87.65 0.64 21.86 16 12 O -0.58 -32.55 13.88 -3.03 -0.04 -32.59 16 13 N -0.60 -26.11 2.46 -826.17 -2.03 -28.14 16 14 C 0.10 2.90 5.85 86.38 0.50 3.41 16 15 C -0.16 -3.67 10.18 71.98 0.73 -2.94 16 16 C 0.27 14.90 5.16 85.63 0.44 15.34 16 17 C -0.54 -32.52 9.39 25.60 0.24 -32.28 16 18 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 19 C 0.01 0.34 5.46 84.66 0.46 0.81 16 20 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 21 Si 0.97 46.82 29.54 68.60 2.03 48.85 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 24 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 25 C 0.02 0.34 6.51 86.45 0.56 0.91 16 26 C 0.09 1.54 3.19 31.47 0.10 1.64 16 27 H 0.12 1.02 7.46 -2.39 -0.02 1.00 16 28 O -0.40 -8.13 10.29 -148.98 -1.53 -9.67 16 29 C 0.02 0.24 10.87 113.37 1.23 1.47 16 30 H 0.04 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.42 3.97 8.39 -92.70 -0.78 3.19 16 36 H 0.05 2.36 6.43 -2.39 -0.02 2.34 16 37 H 0.06 1.62 8.01 -2.39 -0.02 1.60 16 38 H 0.13 2.95 7.71 -2.39 -0.02 2.94 16 39 H 0.10 1.95 6.70 -2.39 -0.02 1.93 16 40 H 0.07 2.28 8.07 -2.38 -0.02 2.26 16 41 H 0.10 2.22 6.61 -2.39 -0.02 2.20 16 42 H 0.06 1.24 7.12 -2.39 -0.02 1.23 16 43 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.02 1.23 8.07 -2.39 -0.02 1.22 16 46 H -0.01 -0.66 7.42 -2.38 -0.02 -0.68 16 47 H 0.27 15.68 8.31 -92.72 -0.77 14.91 16 48 H 0.09 1.02 7.68 -2.39 -0.02 1.00 16 49 H 0.09 1.78 7.96 -2.39 -0.02 1.76 16 50 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.06 0.40 8.10 -2.39 -0.02 0.38 16 Total: -1.00 -95.49 418.80 -0.63 -96.12 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.12 Total: 15.27 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 7.38 Total: 27.24 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -8.54 Total: -122.42 kcal Atomic # 8 Polarization: -63.44 SS G_CDS: -1.62 Total: -65.07 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -95.49 -0.63 -96.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211738545.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.097 kcal (2) G-P(sol) polarization free energy of solvation -95.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds