Wall clock time and date at job start Wed Apr 1 2020 01:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 113.99771 * 2 1 4 4 H 1.08999 * 110.35738 * 27.85296 * 3 2 1 5 5 C 1.54298 * 110.47477 * 265.63139 * 3 2 1 6 6 N 1.47898 * 107.08753 * 242.53404 * 5 3 2 7 7 C 1.46905 * 111.00415 * 214.01141 * 6 5 3 8 8 C 1.50703 * 109.46450 * 307.39613 * 7 6 5 9 9 O 1.21290 * 120.00240 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99540 * 179.97438 * 8 7 6 11 11 C 1.37105 * 119.99819 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00201 * 0.02562 * 11 10 8 13 13 C 1.38950 * 119.99904 * 180.02562 * 11 10 8 14 14 N 1.31415 * 120.00283 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00014 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47328 * 89.99690 * 15 13 11 17 17 H 1.48499 * 109.47099 * 210.00012 * 15 13 11 18 18 H 1.48502 * 109.46858 * 329.99729 * 15 13 11 19 19 C 1.48538 * 105.82021 * 334.52098 * 6 5 3 20 20 C 1.54600 * 110.30838 * 149.99872 * 3 2 1 21 21 H 1.08996 * 110.72665 * 22.33695 * 20 3 2 22 22 N 1.46504 * 110.72156 * 259.22579 * 20 3 2 23 23 C 1.34775 * 119.99531 * 157.45330 * 22 20 3 24 24 O 1.21279 * 120.00300 * 359.97438 * 23 22 20 25 25 C 1.50703 * 119.99773 * 180.02562 * 23 22 20 26 26 H 1.09001 * 109.46980 * 59.99839 * 25 23 22 27 27 C 1.52997 * 109.47084 * 299.99639 * 25 23 22 28 28 C 1.53006 * 109.47126 * 179.97438 * 25 23 22 29 29 C 1.52997 * 109.47127 * 179.97438 * 28 25 23 30 30 C 1.52992 * 109.47223 * 300.00324 * 28 25 23 31 31 H 1.09009 * 109.46871 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47578 * 300.00036 * 1 2 3 33 33 H 1.08999 * 109.47548 * 60.00325 * 1 2 3 34 34 H 1.09006 * 110.02492 * 123.10401 * 5 3 2 35 35 H 1.08996 * 109.94960 * 1.92371 * 5 3 2 36 36 H 1.09003 * 109.47178 * 67.39221 * 7 6 5 37 37 H 1.08994 * 109.47348 * 187.40090 * 7 6 5 38 38 H 0.97000 * 120.00968 * 0.02562 * 10 8 7 39 39 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 40 40 H 1.08997 * 110.66810 * 280.76830 * 19 6 5 41 41 H 1.09004 * 110.80872 * 157.70490 * 19 6 5 42 42 H 0.96998 * 120.00303 * 337.45076 * 22 20 3 43 43 H 1.09002 * 109.47045 * 60.00033 * 27 25 23 44 44 H 1.09000 * 109.47140 * 179.97438 * 27 25 23 45 45 H 1.09001 * 109.47375 * 299.99958 * 27 25 23 46 46 H 1.08998 * 109.46505 * 59.99690 * 28 25 23 47 47 H 1.09002 * 109.47153 * 180.02562 * 29 28 25 48 48 H 1.09001 * 109.46832 * 60.00321 * 29 28 25 49 49 H 1.09004 * 109.47261 * 300.00303 * 29 28 25 50 50 H 1.08996 * 109.47747 * 59.99547 * 30 28 25 51 51 H 1.09002 * 109.47103 * 179.97438 * 30 28 25 52 52 H 1.09001 * 109.47066 * 299.99881 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3389 2.0193 0.4774 5 6 2.3302 1.7537 -1.4413 6 7 3.7955 1.9364 -1.5243 7 6 4.1382 3.0372 -2.4347 8 6 3.4585 2.8210 -3.7623 9 8 2.7574 1.8461 -3.9330 10 7 3.6291 3.7114 -4.7595 11 6 3.0112 3.5145 -5.9675 12 1 2.3875 2.6460 -6.1198 13 6 3.1874 4.4322 -6.9958 14 7 3.9459 5.4892 -6.8103 15 14 2.3450 4.1643 -8.6414 16 1 1.0095 4.8134 -8.6253 17 1 3.1712 4.7583 -9.7229 18 1 2.1847 2.7080 -8.8841 19 6 4.2459 2.2310 -0.1398 20 6 3.3755 1.2849 0.7250 21 1 3.7924 0.2779 0.7340 22 7 3.2457 1.8026 2.0894 23 6 4.1548 1.4679 3.0263 24 8 5.0800 0.7378 2.7401 25 6 4.0211 1.9999 4.4299 26 1 3.0724 1.6712 4.8542 27 6 4.0649 3.5290 4.4021 28 6 5.1730 1.4718 5.2874 29 6 5.0376 2.0124 6.7123 30 6 5.1288 -0.0573 5.3152 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8257 2.6948 -1.6602 35 1 2.0108 0.9882 -2.1484 36 1 3.8040 3.9816 -2.0050 37 1 5.2181 3.0660 -2.5798 38 1 4.1895 4.4913 -4.6230 39 1 4.0686 6.1301 -7.5281 40 1 4.0512 3.2729 0.1145 41 1 5.3039 1.9980 -0.0190 42 1 2.5056 2.3862 2.3184 43 1 3.2440 3.9049 3.7913 44 1 3.9677 3.9138 5.4173 45 1 5.0136 3.8577 3.9778 46 1 6.1218 1.8001 4.8632 47 1 5.8585 1.6365 7.3231 48 1 4.0887 1.6843 7.1367 49 1 5.0694 3.1018 6.6922 50 1 5.2254 -0.4421 4.3000 51 1 5.9497 -0.4335 5.9257 52 1 4.1799 -0.3857 5.7393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213511282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:12 Heat of formation + Delta-G solvation = -141.083477 kcal Electronic energy + Delta-G solvation = -30836.687134 eV Core-core repulsion = 26642.181126 eV Total energy + Delta-G solvation = -4194.506008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.56896 -40.65661 -39.62452 -37.77052 -37.03815 -36.03635 -35.44323 -33.33737 -32.32852 -31.07944 -29.32954 -28.37076 -27.96673 -27.22399 -26.01005 -25.11125 -22.80422 -22.40738 -21.75770 -21.02442 -20.53125 -19.86750 -18.50670 -17.97473 -17.78677 -17.23954 -16.66803 -16.57089 -16.35401 -16.10984 -15.88653 -15.71277 -15.48050 -15.30766 -15.14897 -14.75387 -14.63318 -14.36963 -13.97359 -13.83793 -13.47507 -13.41495 -13.26534 -13.10810 -13.00609 -12.97292 -12.91155 -12.84551 -12.57433 -12.42858 -12.39635 -12.37135 -12.13044 -11.94196 -11.81096 -11.57945 -11.50778 -11.43511 -10.78681 -10.53953 -10.32567 -10.05689 -10.01406 -9.39177 -8.48088 -5.96718 1.36437 1.40778 1.53447 1.65764 1.96964 2.01630 2.27807 2.67678 2.90587 3.17462 3.20069 3.53443 3.56669 3.69415 3.83165 3.92924 3.99175 4.18019 4.21416 4.22921 4.31802 4.38641 4.44472 4.49233 4.50580 4.54763 4.59191 4.61390 4.65727 4.73553 4.84021 4.85151 4.85313 4.96107 4.98916 5.07922 5.12429 5.14208 5.26196 5.32128 5.39825 5.42235 5.52825 5.63131 5.77054 5.84896 6.03179 6.21561 6.53786 6.58418 7.10997 7.29043 7.53181 8.08806 8.69242 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.002184 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.582671 B =12817.902134 C =13682.471229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.082 3.918 4 H 0.103 0.897 5 C 0.038 3.962 6 N -0.512 5.512 7 C 0.048 3.952 8 C 0.438 3.562 9 O -0.615 6.615 10 N -0.571 5.571 11 C -0.332 4.332 12 H 0.079 0.921 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.993 3.007 16 H -0.269 1.269 17 H -0.271 1.271 18 H -0.275 1.275 19 C 0.035 3.965 20 C 0.155 3.845 21 H 0.083 0.917 22 N -0.708 5.708 23 C 0.515 3.485 24 O -0.570 6.570 25 C -0.098 4.098 26 H 0.118 0.882 27 C -0.145 4.145 28 C -0.077 4.077 29 C -0.144 4.144 30 C -0.159 4.159 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.415 0.585 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.053 0.947 51 H 0.052 0.948 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.662 -0.353 27.642 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C 0.022 3.978 4 H 0.121 0.879 5 C -0.091 4.091 6 N -0.238 5.238 7 C -0.083 4.083 8 C 0.226 3.774 9 O -0.501 6.501 10 N -0.208 5.208 11 C -0.461 4.461 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.816 3.184 16 H -0.195 1.195 17 H -0.196 1.196 18 H -0.199 1.199 19 C -0.094 4.094 20 C 0.049 3.951 21 H 0.102 0.898 22 N -0.361 5.361 23 C 0.303 3.697 24 O -0.448 6.448 25 C -0.119 4.119 26 H 0.136 0.864 27 C -0.202 4.202 28 C -0.096 4.096 29 C -0.201 4.201 30 C -0.216 4.216 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.253 0.747 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.072 0.928 51 H 0.071 0.929 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.064 -1.991 26.987 27.233 hybrid contribution -0.701 1.264 -1.074 1.801 sum -3.765 -0.727 25.913 26.195 Atomic orbital electron populations 1.23011 0.79330 1.03986 1.00865 1.87962 1.21634 1.27173 1.94823 1.23283 0.94474 0.85867 0.94133 0.87909 1.23238 0.88400 1.00800 0.96640 1.64448 1.12732 1.39742 1.06858 1.22017 1.01881 0.93707 0.90678 1.20670 0.85445 0.84305 0.87029 1.90496 1.44271 1.31901 1.83415 1.41907 1.44511 1.23124 1.11281 1.19645 1.27598 1.08946 0.89920 0.90316 1.26042 0.97590 0.94820 1.02844 1.69671 1.38598 1.12253 1.35500 0.84931 0.78193 0.78347 0.76887 1.19452 1.19579 1.19947 1.23580 1.00468 0.98723 0.86648 1.21516 0.93933 0.98284 0.81386 0.89850 1.45860 1.29946 1.51630 1.08656 1.21366 0.80927 0.79382 0.88032 1.90665 1.33939 1.37992 1.82248 1.21437 1.02256 0.98400 0.89851 0.86429 1.21875 1.02697 0.91214 1.04418 1.20896 0.97145 0.95502 0.96022 1.21883 1.02416 1.01647 0.94133 1.22032 1.01449 0.95849 1.02263 0.88534 0.91546 0.94373 0.93984 0.91085 0.90467 0.87330 0.76972 0.91273 0.91032 0.89746 0.74732 0.90741 0.89197 0.93077 0.92491 0.92560 0.91631 0.91133 0.92838 0.92894 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.85 113.37 1.23 1.71 16 2 O -0.40 -11.12 10.31 -148.98 -1.54 -12.65 16 3 C 0.08 2.06 3.22 31.58 0.10 2.16 16 4 H 0.10 1.83 7.41 -2.39 -0.02 1.81 16 5 C 0.04 1.29 4.90 86.55 0.42 1.72 16 6 N -0.51 -17.73 5.26 -886.91 -4.67 -22.40 16 7 C 0.05 1.72 5.48 85.56 0.47 2.19 16 8 C 0.44 21.02 7.35 87.66 0.64 21.67 16 9 O -0.61 -33.99 13.37 -3.06 -0.04 -34.03 16 10 N -0.57 -29.36 5.29 -306.98 -1.62 -30.98 16 11 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 12 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 13 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 14 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 15 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 C 0.03 0.91 6.24 86.65 0.54 1.45 16 20 C 0.16 3.88 3.12 46.20 0.14 4.02 16 21 H 0.08 2.69 7.56 -2.39 -0.02 2.67 16 22 N -0.71 -12.27 5.08 -436.82 -2.22 -14.49 16 23 C 0.51 10.35 6.86 87.66 0.60 10.95 16 24 O -0.57 -16.77 13.34 -3.03 -0.04 -16.81 16 25 C -0.10 -1.21 2.32 -11.54 -0.03 -1.24 16 26 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 27 C -0.14 -1.18 8.74 71.98 0.63 -0.55 16 28 C -0.08 -1.13 2.15 -10.79 -0.02 -1.15 16 29 C -0.14 -1.33 8.84 71.98 0.64 -0.69 16 30 C -0.16 -2.85 8.87 71.98 0.64 -2.21 16 31 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.07 0.93 8.11 -2.39 -0.02 0.91 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.04 1.44 7.59 -2.38 -0.02 1.42 16 35 H 0.07 3.08 6.56 -2.39 -0.02 3.06 16 36 H 0.08 2.33 7.89 -2.39 -0.02 2.31 16 37 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 38 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 39 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 40 H 0.07 1.55 7.85 -2.39 -0.02 1.53 16 41 H 0.08 2.36 8.14 -2.38 -0.02 2.35 16 42 H 0.41 4.24 7.78 -92.71 -0.72 3.52 16 43 H 0.07 0.40 7.56 -2.39 -0.02 0.38 16 44 H 0.09 0.44 6.43 -2.39 -0.02 0.42 16 45 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 47 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.07 0.49 6.43 -2.38 -0.02 0.47 16 50 H 0.05 1.32 5.51 -2.39 -0.01 1.31 16 51 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -75.03 410.27 -1.05 -76.09 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -0.53 Total: 37.71 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 7.29 Total: 21.78 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -8.23 Total: -117.08 kcal Atomic # 8 Polarization: -61.88 SS G_CDS: -1.62 Total: -63.49 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -75.03 -1.05 -76.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213511282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.996 kcal (2) G-P(sol) polarization free energy of solvation -75.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds