Wall clock time and date at job start Wed Apr 1 2020 01:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00111 * 2 1 4 4 H 1.09007 * 110.35164 * 27.85764 * 3 2 1 5 5 C 1.54299 * 110.47760 * 265.63899 * 3 2 1 6 6 N 1.47906 * 107.08118 * 242.53227 * 5 3 2 7 7 C 1.46905 * 110.99679 * 214.00874 * 6 5 3 8 8 C 1.50703 * 109.47034 * 307.39349 * 7 6 5 9 9 O 1.21288 * 119.99832 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99988 * 180.02562 * 8 7 6 11 11 C 1.37097 * 120.00005 * 180.02562 * 10 8 7 12 12 H 1.07993 * 120.00137 * 359.97438 * 11 10 8 13 13 C 1.38954 * 119.99637 * 180.02562 * 11 10 8 14 14 N 1.31409 * 120.00288 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99623 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47216 * 89.99613 * 15 13 11 17 17 H 1.48498 * 109.47184 * 209.99460 * 15 13 11 18 18 H 1.48500 * 109.47325 * 329.99825 * 15 13 11 19 19 C 1.48527 * 105.82147 * 334.51870 * 6 5 3 20 20 C 1.54593 * 110.31017 * 149.99851 * 3 2 1 21 21 H 1.08998 * 110.72409 * 22.33835 * 20 3 2 22 22 N 1.46498 * 110.72496 * 259.23155 * 20 3 2 23 23 C 1.34777 * 119.99828 * 157.17185 * 22 20 3 24 24 O 1.21283 * 120.00222 * 0.28168 * 23 22 20 25 25 C 1.50703 * 120.00290 * 180.27728 * 23 22 20 26 26 H 1.08998 * 109.46954 * 300.00581 * 25 23 22 27 27 C 1.53001 * 109.46771 * 60.00208 * 25 23 22 28 28 C 1.52990 * 109.47398 * 180.02562 * 25 23 22 29 29 C 1.53007 * 109.47210 * 60.00062 * 28 25 23 30 30 C 1.52995 * 109.47353 * 179.97438 * 28 25 23 31 31 H 1.09004 * 109.46927 * 60.00097 * 1 2 3 32 32 H 1.09001 * 109.46876 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47201 * 299.99754 * 1 2 3 34 34 H 1.09003 * 110.02882 * 123.10648 * 5 3 2 35 35 H 1.08992 * 109.94665 * 1.91344 * 5 3 2 36 36 H 1.08991 * 109.47220 * 67.39853 * 7 6 5 37 37 H 1.09001 * 109.47006 * 187.39914 * 7 6 5 38 38 H 0.97004 * 120.00058 * 0.02562 * 10 8 7 39 39 H 0.97002 * 119.99870 * 180.02562 * 14 13 11 40 40 H 1.09003 * 110.66943 * 280.77448 * 19 6 5 41 41 H 1.09001 * 110.81147 * 157.70966 * 19 6 5 42 42 H 0.97001 * 120.00384 * 337.45631 * 22 20 3 43 43 H 1.08992 * 109.47503 * 60.00389 * 27 25 23 44 44 H 1.08998 * 109.46818 * 180.02562 * 27 25 23 45 45 H 1.09008 * 109.47076 * 299.99851 * 27 25 23 46 46 H 1.08998 * 109.47508 * 300.00200 * 28 25 23 47 47 H 1.09001 * 109.47526 * 179.97438 * 29 28 25 48 48 H 1.08993 * 109.47164 * 300.00488 * 29 28 25 49 49 H 1.08998 * 109.46772 * 59.99687 * 29 28 25 50 50 H 1.09003 * 109.47280 * 60.00024 * 30 28 25 51 51 H 1.09001 * 109.47549 * 179.97438 * 30 28 25 52 52 H 1.08999 * 109.47616 * 300.00389 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3390 2.0193 0.4776 5 6 2.3302 1.7538 -1.4413 6 7 3.7956 1.9365 -1.5242 7 6 4.1382 3.0373 -2.4346 8 6 3.4586 2.8212 -3.7623 9 8 2.7575 1.8464 -3.9330 10 7 3.6299 3.7112 -4.7597 11 6 3.0112 3.5149 -5.9673 12 1 2.3869 2.6469 -6.1194 13 6 3.1883 4.4322 -6.9959 14 7 3.9483 5.4882 -6.8110 15 14 2.3459 4.1644 -8.6415 16 1 1.0107 4.8144 -8.6258 17 1 3.1725 4.7576 -9.7231 18 1 2.1845 2.7082 -8.8838 19 6 4.2460 2.2309 -0.1399 20 6 3.3755 1.2849 0.7249 21 1 3.7924 0.2778 0.7339 22 7 3.2459 1.8024 2.0893 23 6 4.1519 1.4631 3.0277 24 8 5.0774 0.7334 2.7413 25 6 4.0151 1.9904 4.4328 26 1 4.0478 3.0798 4.4168 27 6 2.6811 1.5289 5.0230 28 6 5.1644 1.4586 5.2912 29 6 6.4982 1.9206 4.7008 30 6 5.0259 1.9945 6.7176 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8258 2.6950 -1.6601 35 1 2.0109 0.9884 -2.1484 36 1 3.8041 3.9816 -2.0048 37 1 5.2181 3.0661 -2.5798 38 1 4.1909 4.4907 -4.6233 39 1 4.0716 6.1287 -7.5289 40 1 4.0513 3.2728 0.1146 41 1 5.3040 1.9980 -0.0190 42 1 2.5057 2.3860 2.3185 43 1 2.6483 0.4395 5.0390 44 1 2.5820 1.9106 6.0392 45 1 1.8625 1.9081 4.4113 46 1 5.1321 0.3692 5.3073 47 1 7.3170 1.5422 5.3126 48 1 6.5971 1.5393 3.6845 49 1 6.5305 3.0100 4.6847 50 1 4.0757 1.6657 7.1386 51 1 5.8444 1.6152 7.3294 52 1 5.0584 3.0838 6.7013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213511283.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:17 Heat of formation + Delta-G solvation = -115.254801 kcal Electronic energy + Delta-G solvation = -30836.367869 eV Core-core repulsion = 26642.981876 eV Total energy + Delta-G solvation = -4193.385993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59808 -39.40403 -38.06456 -36.68936 -36.18875 -34.61342 -33.84033 -31.55360 -31.24602 -30.06985 -28.17194 -27.51626 -26.92173 -26.01255 -24.73564 -24.04374 -21.79354 -21.19129 -20.79155 -19.87010 -19.18541 -17.90070 -17.61954 -16.94779 -16.35493 -15.88855 -15.59706 -15.41841 -15.01168 -14.88282 -14.73857 -14.52476 -14.38809 -14.18398 -13.93467 -13.70478 -13.33559 -13.20063 -12.99218 -12.51863 -12.46532 -12.40055 -12.34116 -12.18130 -12.01535 -11.84792 -11.73575 -11.55751 -11.49102 -11.25060 -11.20281 -11.00514 -10.95668 -10.85539 -10.77372 -10.40417 -10.24167 -9.85586 -9.59378 -9.49591 -9.18743 -8.43372 -8.02773 -7.94833 -6.43997 -3.84847 2.47639 2.85292 3.15888 3.25043 3.31164 3.68849 3.87308 4.06978 4.24272 4.29125 4.37503 4.51633 4.58685 4.70978 4.87220 4.89211 5.00112 5.08230 5.12029 5.15935 5.21121 5.22537 5.27332 5.37395 5.39468 5.42734 5.44419 5.50090 5.58228 5.64151 5.67236 5.67406 5.77923 5.79286 5.84256 5.90753 5.95570 6.03167 6.10935 6.19735 6.24681 6.39255 6.55132 7.05416 7.17411 7.25917 7.30244 7.53173 8.03309 8.07878 8.58767 9.15428 9.51152 10.02560 10.73638 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.002201 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.598798 B =12717.268620 C =13757.194144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.070 3.930 4 H 0.067 0.933 5 C 0.033 3.967 6 N -0.487 5.487 7 C 0.036 3.964 8 C 0.441 3.559 9 O -0.580 6.580 10 N -0.562 5.562 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.269 1.269 19 C 0.027 3.973 20 C 0.145 3.855 21 H 0.116 0.884 22 N -0.723 5.723 23 C 0.519 3.481 24 O -0.527 6.527 25 C -0.107 4.107 26 H 0.096 0.904 27 C -0.146 4.146 28 C -0.075 4.075 29 C -0.160 4.160 30 C -0.149 4.149 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.047 0.953 35 H 0.116 0.884 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.046 0.954 41 H 0.091 0.909 42 H 0.397 0.603 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.050 0.950 48 H 0.084 0.916 49 H 0.046 0.954 50 H 0.057 0.943 51 H 0.056 0.944 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 -2.350 25.582 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C 0.010 3.990 4 H 0.084 0.916 5 C -0.095 4.095 6 N -0.212 5.212 7 C -0.095 4.095 8 C 0.226 3.774 9 O -0.464 6.464 10 N -0.198 5.198 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.542 5.542 15 Si 0.757 3.243 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.102 4.102 20 C 0.039 3.961 21 H 0.134 0.866 22 N -0.374 5.374 23 C 0.305 3.695 24 O -0.403 6.403 25 C -0.128 4.128 26 H 0.114 0.886 27 C -0.204 4.204 28 C -0.094 4.094 29 C -0.217 4.217 30 C -0.207 4.207 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.134 0.866 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.231 0.769 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.065 0.935 50 H 0.076 0.924 51 H 0.075 0.925 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.138 -4.019 24.892 25.305 hybrid contribution -1.017 1.942 -0.455 2.239 sum -3.155 -2.078 24.437 24.727 Atomic orbital electron populations 1.22804 0.81114 1.02817 0.99895 1.87989 1.19534 1.26534 1.94856 1.23386 0.93731 0.85326 0.96523 0.91558 1.23435 0.88638 1.02426 0.94992 1.64554 1.12276 1.39438 1.04930 1.22137 1.01746 0.92163 0.93502 1.19701 0.86447 0.85569 0.85670 1.90501 1.42916 1.30595 1.82390 1.41850 1.44091 1.22534 1.11345 1.19699 1.26192 1.08850 0.88090 0.87876 1.25274 0.97312 0.95382 1.00003 1.69612 1.38236 1.12020 1.34364 0.85852 0.78741 0.78801 0.80870 1.20458 1.20897 1.19369 1.23608 1.00779 0.97165 0.88671 1.21898 0.94435 0.99921 0.79809 0.86630 1.46049 1.29615 1.51667 1.10107 1.20664 0.81655 0.80419 0.86716 1.90664 1.31613 1.36226 1.81766 1.21410 0.97636 1.01926 0.91867 0.88589 1.21843 0.94764 1.02243 1.01536 1.20897 0.93858 1.00960 0.93719 1.22082 0.95805 1.00396 1.03459 1.21928 1.01783 1.01049 0.95912 0.93526 0.89595 0.94484 0.93484 0.86625 0.93307 0.88851 0.77450 0.91847 0.93573 0.89070 0.76879 0.91923 0.91076 0.92302 0.90543 0.93053 0.89729 0.93538 0.92438 0.92455 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.85 101.05 1.10 1.42 16 2 O -0.37 -5.24 10.31 -35.23 -0.36 -5.60 16 3 C 0.07 0.91 3.22 -25.21 -0.08 0.83 16 4 H 0.07 0.69 7.41 -51.93 -0.38 0.31 16 5 C 0.03 0.56 4.90 -2.59 -0.01 0.55 16 6 N -0.49 -8.43 5.26 -231.69 -1.22 -9.65 16 7 C 0.04 0.65 5.48 -4.97 -0.03 0.63 16 8 C 0.44 10.34 7.36 -10.99 -0.08 10.26 16 9 O -0.58 -15.37 13.37 5.55 0.07 -15.30 16 10 N -0.56 -14.16 5.29 -10.96 -0.06 -14.21 16 11 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 12 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 15 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C 0.03 0.37 6.24 -1.90 -0.01 0.36 16 20 C 0.14 1.86 3.12 -66.07 -0.21 1.66 16 21 H 0.12 1.81 7.56 -51.93 -0.39 1.42 16 22 N -0.72 -7.04 5.08 -52.01 -0.26 -7.30 16 23 C 0.52 5.55 6.86 -10.98 -0.08 5.47 16 24 O -0.53 -7.62 13.34 5.55 0.07 -7.54 16 25 C -0.11 -0.79 2.32 -91.77 -0.21 -1.01 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 27 C -0.15 -0.84 8.74 37.16 0.32 -0.51 16 28 C -0.08 -0.61 2.15 -90.62 -0.19 -0.80 16 29 C -0.16 -1.48 8.87 37.16 0.33 -1.15 16 30 C -0.15 -0.89 8.84 37.16 0.33 -0.56 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 34 H 0.05 0.81 7.59 -51.93 -0.39 0.41 16 35 H 0.12 2.37 6.56 -51.93 -0.34 2.03 16 36 H 0.05 0.79 7.89 -51.93 -0.41 0.38 16 37 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.05 0.57 7.85 -51.93 -0.41 0.16 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.40 2.77 7.78 -40.82 -0.32 2.45 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.31 6.43 -51.93 -0.33 -0.02 16 45 H 0.06 0.28 7.56 -51.92 -0.39 -0.11 16 46 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.08 1.01 5.51 -51.93 -0.29 0.72 16 49 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.29 6.43 -51.93 -0.33 -0.04 16 51 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 410.26 15.07 6.18 6.18 Total: -1.00 -32.75 410.26 -7.83 -40.58 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -8.90 Total: 11.35 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 0.94 Total: 9.23 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.82 Total: -54.85 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.21 Total: -28.44 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.75 -7.83 -40.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213511283.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.675 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds