Wall clock time and date at job start Wed Apr 1 2020 01:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00111 * 2 1 4 4 H 1.09007 * 110.35164 * 27.85764 * 3 2 1 5 5 C 1.54299 * 110.47760 * 265.63899 * 3 2 1 6 6 N 1.47906 * 107.08118 * 242.53227 * 5 3 2 7 7 C 1.46905 * 110.99679 * 214.00874 * 6 5 3 8 8 C 1.50703 * 109.47034 * 307.39349 * 7 6 5 9 9 O 1.21288 * 119.99832 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99988 * 180.02562 * 8 7 6 11 11 C 1.37097 * 120.00005 * 180.02562 * 10 8 7 12 12 H 1.07993 * 120.00137 * 359.97438 * 11 10 8 13 13 C 1.38954 * 119.99637 * 180.02562 * 11 10 8 14 14 N 1.31409 * 120.00288 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99623 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47216 * 89.99613 * 15 13 11 17 17 H 1.48498 * 109.47184 * 209.99460 * 15 13 11 18 18 H 1.48500 * 109.47325 * 329.99825 * 15 13 11 19 19 C 1.48527 * 105.82147 * 334.51870 * 6 5 3 20 20 C 1.54593 * 110.31017 * 149.99851 * 3 2 1 21 21 H 1.08998 * 110.72409 * 22.33835 * 20 3 2 22 22 N 1.46498 * 110.72496 * 259.23155 * 20 3 2 23 23 C 1.34777 * 119.99828 * 157.17185 * 22 20 3 24 24 O 1.21283 * 120.00222 * 0.28168 * 23 22 20 25 25 C 1.50703 * 120.00290 * 180.27728 * 23 22 20 26 26 H 1.08998 * 109.46954 * 300.00581 * 25 23 22 27 27 C 1.53001 * 109.46771 * 60.00208 * 25 23 22 28 28 C 1.52990 * 109.47398 * 180.02562 * 25 23 22 29 29 C 1.53007 * 109.47210 * 60.00062 * 28 25 23 30 30 C 1.52995 * 109.47353 * 179.97438 * 28 25 23 31 31 H 1.09004 * 109.46927 * 60.00097 * 1 2 3 32 32 H 1.09001 * 109.46876 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47201 * 299.99754 * 1 2 3 34 34 H 1.09003 * 110.02882 * 123.10648 * 5 3 2 35 35 H 1.08992 * 109.94665 * 1.91344 * 5 3 2 36 36 H 1.08991 * 109.47220 * 67.39853 * 7 6 5 37 37 H 1.09001 * 109.47006 * 187.39914 * 7 6 5 38 38 H 0.97004 * 120.00058 * 0.02562 * 10 8 7 39 39 H 0.97002 * 119.99870 * 180.02562 * 14 13 11 40 40 H 1.09003 * 110.66943 * 280.77448 * 19 6 5 41 41 H 1.09001 * 110.81147 * 157.70966 * 19 6 5 42 42 H 0.97001 * 120.00384 * 337.45631 * 22 20 3 43 43 H 1.08992 * 109.47503 * 60.00389 * 27 25 23 44 44 H 1.08998 * 109.46818 * 180.02562 * 27 25 23 45 45 H 1.09008 * 109.47076 * 299.99851 * 27 25 23 46 46 H 1.08998 * 109.47508 * 300.00200 * 28 25 23 47 47 H 1.09001 * 109.47526 * 179.97438 * 29 28 25 48 48 H 1.08993 * 109.47164 * 300.00488 * 29 28 25 49 49 H 1.08998 * 109.46772 * 59.99687 * 29 28 25 50 50 H 1.09003 * 109.47280 * 60.00024 * 30 28 25 51 51 H 1.09001 * 109.47549 * 179.97438 * 30 28 25 52 52 H 1.08999 * 109.47616 * 300.00389 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3390 2.0193 0.4776 5 6 2.3302 1.7538 -1.4413 6 7 3.7956 1.9365 -1.5242 7 6 4.1382 3.0373 -2.4346 8 6 3.4586 2.8212 -3.7623 9 8 2.7575 1.8464 -3.9330 10 7 3.6299 3.7112 -4.7597 11 6 3.0112 3.5149 -5.9673 12 1 2.3869 2.6469 -6.1194 13 6 3.1883 4.4322 -6.9959 14 7 3.9483 5.4882 -6.8110 15 14 2.3459 4.1644 -8.6415 16 1 1.0107 4.8144 -8.6258 17 1 3.1725 4.7576 -9.7231 18 1 2.1845 2.7082 -8.8838 19 6 4.2460 2.2309 -0.1399 20 6 3.3755 1.2849 0.7249 21 1 3.7924 0.2778 0.7339 22 7 3.2459 1.8024 2.0893 23 6 4.1519 1.4631 3.0277 24 8 5.0774 0.7334 2.7413 25 6 4.0151 1.9904 4.4328 26 1 4.0478 3.0798 4.4168 27 6 2.6811 1.5289 5.0230 28 6 5.1644 1.4586 5.2912 29 6 6.4982 1.9206 4.7008 30 6 5.0259 1.9945 6.7176 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8258 2.6950 -1.6601 35 1 2.0109 0.9884 -2.1484 36 1 3.8041 3.9816 -2.0048 37 1 5.2181 3.0661 -2.5798 38 1 4.1909 4.4907 -4.6233 39 1 4.0716 6.1287 -7.5289 40 1 4.0513 3.2728 0.1146 41 1 5.3040 1.9980 -0.0190 42 1 2.5057 2.3860 2.3185 43 1 2.6483 0.4395 5.0390 44 1 2.5820 1.9106 6.0392 45 1 1.8625 1.9081 4.4113 46 1 5.1321 0.3692 5.3073 47 1 7.3170 1.5422 5.3126 48 1 6.5971 1.5393 3.6845 49 1 6.5305 3.0100 4.6847 50 1 4.0757 1.6657 7.1386 51 1 5.8444 1.6152 7.3294 52 1 5.0584 3.0838 6.7013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213511283.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:16 Heat of formation + Delta-G solvation = -141.108234 kcal Electronic energy + Delta-G solvation = -30837.488958 eV Core-core repulsion = 26642.981876 eV Total energy + Delta-G solvation = -4194.507082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.56765 -40.65694 -39.62402 -37.76963 -37.03753 -36.03675 -35.44393 -33.33839 -32.33057 -31.08339 -29.31189 -28.37486 -27.96495 -27.22258 -26.02131 -25.11511 -22.80077 -22.40508 -21.74411 -21.02315 -20.55094 -19.87064 -18.47599 -17.98824 -17.78296 -17.24212 -16.67028 -16.58291 -16.47242 -15.89863 -15.86381 -15.74509 -15.52121 -15.33112 -15.16961 -14.75138 -14.63255 -14.36704 -13.98181 -13.81188 -13.47639 -13.41779 -13.28171 -13.09768 -13.01244 -12.96290 -12.91937 -12.84912 -12.56317 -12.42907 -12.40426 -12.36469 -12.13092 -11.92848 -11.82175 -11.57771 -11.50822 -11.43495 -10.82178 -10.48710 -10.32241 -10.07257 -10.01966 -9.39184 -8.48147 -5.96737 1.36406 1.40763 1.53444 1.65684 1.96973 2.01609 2.27805 2.67785 2.90818 3.17467 3.20070 3.53423 3.56780 3.69634 3.82507 3.93280 3.99057 4.18101 4.21564 4.22921 4.31773 4.38415 4.44493 4.49858 4.50965 4.54881 4.59270 4.61402 4.65671 4.73314 4.84212 4.85075 4.85868 4.95724 4.98650 5.08066 5.12526 5.14218 5.25884 5.32379 5.39796 5.41776 5.53111 5.63566 5.77037 5.84920 6.03153 6.21756 6.53799 6.58405 7.10962 7.29065 7.53138 8.08786 8.69191 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.002201 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.598798 B =12717.268620 C =13757.194144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.082 3.918 4 H 0.103 0.897 5 C 0.038 3.962 6 N -0.512 5.512 7 C 0.048 3.952 8 C 0.438 3.562 9 O -0.615 6.615 10 N -0.571 5.571 11 C -0.332 4.332 12 H 0.079 0.921 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.993 3.007 16 H -0.269 1.269 17 H -0.271 1.271 18 H -0.275 1.275 19 C 0.034 3.966 20 C 0.155 3.845 21 H 0.083 0.917 22 N -0.708 5.708 23 C 0.514 3.486 24 O -0.570 6.570 25 C -0.099 4.099 26 H 0.120 0.880 27 C -0.144 4.144 28 C -0.077 4.077 29 C -0.159 4.159 30 C -0.144 4.144 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.415 0.585 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.055 0.945 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.810 -0.547 27.707 27.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C 0.023 3.977 4 H 0.121 0.879 5 C -0.091 4.091 6 N -0.238 5.238 7 C -0.083 4.083 8 C 0.225 3.775 9 O -0.501 6.501 10 N -0.208 5.208 11 C -0.461 4.461 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.816 3.184 16 H -0.195 1.195 17 H -0.196 1.196 18 H -0.199 1.199 19 C -0.095 4.095 20 C 0.049 3.951 21 H 0.101 0.899 22 N -0.361 5.361 23 C 0.303 3.697 24 O -0.449 6.449 25 C -0.120 4.120 26 H 0.138 0.862 27 C -0.201 4.201 28 C -0.096 4.096 29 C -0.216 4.216 30 C -0.201 4.201 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.253 0.747 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.088 0.912 51 H 0.074 0.926 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.210 -2.186 27.051 27.328 hybrid contribution -0.666 1.310 -1.090 1.830 sum -3.876 -0.875 25.961 26.264 Atomic orbital electron populations 1.23011 0.79331 1.03976 1.00868 1.87965 1.21631 1.27161 1.94821 1.23283 0.94474 0.85871 0.94120 0.87909 1.23240 0.88401 1.00794 0.96655 1.64448 1.12733 1.39734 1.06858 1.22017 1.01887 0.93705 0.90680 1.20669 0.85444 0.84312 0.87028 1.90495 1.44282 1.31888 1.83420 1.41905 1.44455 1.23177 1.11283 1.19643 1.27541 1.08990 0.89934 0.90313 1.26043 0.97590 0.94827 1.02844 1.69670 1.38532 1.12319 1.35499 0.84930 0.78191 0.78349 0.76882 1.19450 1.19584 1.19944 1.23584 1.00498 0.98718 0.86655 1.21512 0.93940 0.98277 0.81381 0.89868 1.45858 1.30112 1.51555 1.08560 1.21368 0.80800 0.79601 0.87943 1.90666 1.33423 1.38185 1.82577 1.21442 0.98350 1.03011 0.89194 0.86247 1.21864 0.93926 1.01476 1.02855 1.20894 0.93497 0.99866 0.95299 1.22037 0.96854 1.00954 1.01772 1.21882 1.02489 1.01609 0.94105 0.94400 0.88549 0.91509 0.93993 0.91085 0.90477 0.87320 0.76974 0.91273 0.91051 0.89693 0.74731 0.93302 0.89133 0.90783 0.92619 0.92960 0.92700 0.92417 0.91150 0.92571 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.85 113.37 1.23 1.71 16 2 O -0.40 -11.09 10.31 -148.98 -1.54 -12.63 16 3 C 0.08 2.06 3.22 31.58 0.10 2.16 16 4 H 0.10 1.83 7.41 -2.38 -0.02 1.81 16 5 C 0.04 1.29 4.90 86.55 0.42 1.71 16 6 N -0.51 -17.73 5.26 -886.93 -4.67 -22.40 16 7 C 0.05 1.72 5.48 85.56 0.47 2.19 16 8 C 0.44 21.03 7.36 87.66 0.64 21.67 16 9 O -0.61 -34.00 13.37 -3.05 -0.04 -34.05 16 10 N -0.57 -29.37 5.29 -306.99 -1.62 -30.99 16 11 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 12 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 14 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 15 Si 0.99 42.98 29.55 68.60 2.03 45.00 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 C 0.03 0.90 6.24 86.65 0.54 1.44 16 20 C 0.16 3.88 3.12 46.20 0.14 4.02 16 21 H 0.08 2.68 7.56 -2.39 -0.02 2.66 16 22 N -0.71 -12.26 5.08 -436.84 -2.22 -14.48 16 23 C 0.51 10.34 6.86 87.66 0.60 10.95 16 24 O -0.57 -16.76 13.34 -3.04 -0.04 -16.80 16 25 C -0.10 -1.22 2.32 -11.54 -0.03 -1.24 16 26 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 27 C -0.14 -1.18 8.74 71.98 0.63 -0.55 16 28 C -0.08 -1.12 2.15 -10.80 -0.02 -1.15 16 29 C -0.16 -2.84 8.87 71.98 0.64 -2.20 16 30 C -0.14 -1.33 8.84 71.98 0.64 -0.69 16 31 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 0.93 8.11 -2.39 -0.02 0.91 16 34 H 0.04 1.44 7.59 -2.39 -0.02 1.42 16 35 H 0.07 3.08 6.56 -2.39 -0.02 3.06 16 36 H 0.08 2.32 7.89 -2.39 -0.02 2.31 16 37 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 38 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 39 H 0.28 14.00 8.31 -92.71 -0.77 13.22 16 40 H 0.07 1.55 7.85 -2.39 -0.02 1.53 16 41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.41 4.23 7.78 -92.71 -0.72 3.51 16 43 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.09 0.43 6.43 -2.39 -0.02 0.41 16 45 H 0.07 0.40 7.56 -2.38 -0.02 0.38 16 46 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 47 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.05 1.34 5.51 -2.39 -0.01 1.32 16 49 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.07 0.48 6.43 -2.39 -0.02 0.47 16 51 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -75.09 410.26 -1.05 -76.15 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: -0.53 Total: 37.66 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 7.29 Total: 21.77 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -8.23 Total: -117.10 kcal Atomic # 8 Polarization: -61.86 SS G_CDS: -1.62 Total: -63.48 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -75.09 -1.05 -76.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213511283.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.960 kcal (2) G-P(sol) polarization free energy of solvation -75.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds