Wall clock time and date at job start Wed Apr 1 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47012 * 2 1 4 4 O 1.42903 * 109.47174 * 119.99766 * 2 1 3 5 5 C 1.42890 * 114.00032 * 150.00245 * 4 2 1 6 6 C 1.53007 * 109.47028 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.47017 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99980 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99749 * 180.02562 * 7 6 5 10 10 C 1.47018 * 125.64993 * 359.97196 * 9 7 6 11 11 C 1.54325 * 107.40412 * 178.90064 * 10 9 7 12 12 H 1.09000 * 110.72188 * 96.24097 * 11 10 9 13 13 C 1.52995 * 110.72304 * 219.52316 * 11 10 9 14 14 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 15 15 H 1.09000 * 110.89538 * 277.26533 * 14 11 10 16 16 N 1.46905 * 111.07106 * 153.48410 * 14 11 10 17 17 C 1.46900 * 110.99852 * 161.21207 * 16 14 11 18 18 C 1.50705 * 109.46939 * 180.02562 * 17 16 14 19 19 O 1.21290 * 120.00100 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99670 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99429 * 179.97438 * 20 18 17 22 22 H 1.07993 * 120.00385 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99367 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00375 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99510 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47137 * 90.00272 * 25 23 21 27 27 H 1.48504 * 109.47179 * 210.00115 * 25 23 21 28 28 H 1.48501 * 109.47291 * 330.00264 * 25 23 21 29 29 C 1.47426 * 125.64489 * 180.02562 * 9 7 6 30 30 H 1.09000 * 109.47652 * 300.00103 * 1 2 3 31 31 H 1.08999 * 109.47335 * 60.00413 * 1 2 3 32 32 H 1.09002 * 109.46953 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47169 * 239.99798 * 2 1 3 34 34 H 1.09004 * 109.47627 * 59.99827 * 3 2 1 35 35 H 1.09000 * 109.47487 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47461 * 299.99802 * 3 2 1 37 37 H 1.08998 * 109.47351 * 60.00207 * 5 4 2 38 38 H 1.09004 * 109.47056 * 299.99721 * 5 4 2 39 39 H 1.08998 * 109.46906 * 59.99910 * 6 5 4 40 40 H 1.08995 * 109.47158 * 299.99728 * 6 5 4 41 41 H 1.09002 * 109.88241 * 298.39592 * 10 9 7 42 42 H 1.09000 * 109.88049 * 59.40721 * 10 9 7 43 43 H 1.08999 * 109.47083 * 58.54334 * 13 11 10 44 44 H 1.09002 * 109.47293 * 178.54343 * 13 11 10 45 45 H 1.09000 * 109.47062 * 298.54438 * 13 11 10 46 46 H 1.00900 * 110.99739 * 37.26051 * 16 14 11 47 47 H 1.09008 * 109.47125 * 299.99737 * 17 16 14 48 48 H 1.09001 * 109.47229 * 60.00105 * 17 16 14 49 49 H 0.96999 * 120.00636 * 0.02562 * 20 18 17 50 50 H 0.97004 * 119.99861 * 179.97438 * 24 23 21 51 51 H 1.08999 * 110.36956 * 322.93474 * 29 9 7 52 52 H 1.09003 * 110.36599 * 85.25378 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2659 -1.3244 0.9887 6 6 3.6754 -2.0090 2.2944 7 6 5.0041 -2.6948 2.1067 8 8 5.5679 -2.6417 1.0341 9 7 5.5655 -3.3680 3.1305 10 6 4.9936 -3.5123 4.4772 11 6 5.9662 -4.3826 5.3008 12 1 6.6352 -3.7584 5.8932 13 6 5.1964 -5.3554 6.1963 14 6 6.7573 -5.1484 4.2040 15 1 6.2021 -6.0221 3.8628 16 7 8.0916 -5.5308 4.6851 17 6 8.6603 -6.6055 3.8608 18 6 10.0258 -6.9706 4.3837 19 8 10.4806 -6.3920 5.3478 20 7 10.7415 -7.9400 3.7799 21 6 11.9839 -8.2717 4.2554 22 1 12.3889 -7.7566 5.1138 23 6 12.7216 -9.2715 3.6332 24 7 12.2286 -9.8987 2.5889 25 14 14.4141 -9.7240 4.2814 26 1 14.2837 -10.7975 5.2991 27 1 15.2612 -10.2049 3.1604 28 1 15.0430 -8.5293 4.8999 29 6 6.8552 -4.0808 3.0856 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 4.0199 -0.5873 0.7126 38 1 3.1808 -2.0706 0.1988 39 1 2.9213 -2.7462 2.5701 40 1 3.7603 -1.2631 3.0846 41 1 4.8886 -2.5322 4.9423 42 1 4.0206 -3.9999 4.4164 43 1 4.5588 -5.9894 5.5802 44 1 5.9016 -5.9765 6.7486 45 1 4.5803 -4.7932 6.8981 46 1 8.0625 -5.7978 5.6576 47 1 8.0098 -7.4792 3.9035 48 1 8.7450 -6.2656 2.8286 49 1 10.3780 -8.4024 3.0087 50 1 12.7438 -10.5964 2.1545 51 1 6.9909 -4.5590 2.1155 52 1 7.6761 -3.3929 3.2885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214171082.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:42 Heat of formation + Delta-G solvation = -152.193713 kcal Electronic energy + Delta-G solvation = -29352.451748 eV Core-core repulsion = 25157.463964 eV Total energy + Delta-G solvation = -4194.987784 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35338 -40.20339 -39.50489 -38.89709 -36.23652 -35.58891 -34.32134 -33.53450 -33.21797 -32.00665 -30.01304 -28.15364 -27.94641 -27.34736 -26.04177 -24.57959 -22.78886 -22.27288 -21.46561 -21.00923 -20.26412 -19.86512 -18.53117 -18.00113 -17.50848 -17.24336 -17.09670 -16.76206 -16.37221 -16.13656 -15.97330 -15.76814 -15.43704 -15.25966 -14.91041 -14.66348 -14.55429 -14.13741 -14.04961 -13.86387 -13.63248 -13.55246 -13.46738 -13.37057 -13.14411 -13.08414 -12.95786 -12.78812 -12.71196 -12.42645 -12.39430 -12.16360 -12.13321 -12.07231 -11.94551 -11.61669 -11.51197 -11.48881 -11.04582 -10.57296 -10.36418 -10.02736 -9.76119 -9.43528 -8.47411 -5.96429 1.37670 1.41630 1.50796 1.54502 1.71987 2.03545 2.28514 2.67767 2.91352 3.19825 3.30369 3.49767 3.54546 3.72480 3.91491 3.95030 4.02935 4.12605 4.16088 4.20225 4.28666 4.29510 4.31094 4.43696 4.45072 4.50326 4.55490 4.61560 4.70860 4.73454 4.76624 4.78600 4.88562 4.90936 4.92466 4.92926 4.97629 5.02344 5.13964 5.26004 5.28192 5.33551 5.39787 5.40864 5.86557 6.06706 6.22386 6.33481 6.45431 6.58449 7.02344 7.11353 7.54723 8.09422 8.69915 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.001646 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.867750 B =17006.580803 C =17849.030935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.394 6.394 5 C 0.080 3.920 6 C -0.122 4.122 7 C 0.527 3.473 8 O -0.590 6.590 9 N -0.615 5.615 10 C 0.105 3.895 11 C -0.097 4.097 12 H 0.092 0.908 13 C -0.140 4.140 14 C 0.081 3.919 15 H 0.070 0.930 16 N -0.667 5.667 17 C 0.065 3.935 18 C 0.439 3.561 19 O -0.621 6.621 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.269 1.269 27 H -0.272 1.272 28 H -0.273 1.273 29 C 0.114 3.886 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.083 0.917 46 H 0.355 0.645 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.058 0.942 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.094 15.765 -0.640 31.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.231 4.231 4 O -0.314 6.314 5 C 0.003 3.997 6 C -0.161 4.161 7 C 0.317 3.683 8 O -0.471 6.471 9 N -0.348 5.348 10 C -0.017 4.017 11 C -0.116 4.116 12 H 0.110 0.890 13 C -0.198 4.198 14 C -0.030 4.030 15 H 0.088 0.912 16 N -0.301 5.301 17 C -0.068 4.068 18 C 0.226 3.774 19 O -0.507 6.507 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.194 1.194 27 H -0.197 1.197 28 H -0.198 1.198 29 C -0.010 4.010 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.102 0.898 46 H 0.175 0.825 47 H 0.088 0.912 48 H 0.113 0.887 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.077 0.923 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.244 16.560 -0.899 31.045 hybrid contribution 0.920 -1.374 -0.387 1.698 sum -25.324 15.186 -1.286 29.556 Atomic orbital electron populations 1.21864 0.92223 1.02880 1.03348 1.22303 0.95999 0.92709 0.87560 1.22293 1.01114 0.96388 1.03345 1.87816 1.36288 1.70315 1.36974 1.22049 0.85445 0.95535 0.96658 1.21393 0.93082 1.01765 0.99853 1.20672 0.87397 0.78033 0.82156 1.90719 1.65987 1.62923 1.27471 1.48465 1.21745 1.51778 1.12824 1.22394 0.97598 1.01584 0.80155 1.22395 0.96583 0.97127 0.95533 0.88971 1.21774 1.00075 0.98563 0.99376 1.22783 0.88435 0.96518 0.95221 0.91209 1.59866 1.21923 1.41167 1.07140 1.21576 0.92177 0.94435 0.98579 1.20792 0.88824 0.82067 0.85695 1.90490 1.73394 1.55915 1.30921 1.41940 1.16259 1.33289 1.29532 1.19689 0.94016 1.18725 1.14029 0.90171 1.26053 1.03448 0.95766 0.95982 1.69677 1.40206 1.25031 1.21215 0.84918 0.76933 0.78462 0.77960 1.19438 1.19674 1.19793 1.22126 0.85673 0.94225 0.98949 0.91799 0.89576 0.92159 0.92150 0.91761 0.93356 0.90083 0.93666 0.93412 0.85809 0.86087 0.88788 0.88386 0.91644 0.92773 0.89840 0.82453 0.91157 0.88665 0.77044 0.91310 0.92330 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.56 71.98 0.69 -0.75 16 2 C 0.07 0.97 3.34 30.59 0.10 1.07 16 3 C -0.17 -2.06 9.53 71.98 0.69 -1.38 16 4 O -0.39 -6.73 9.99 -148.98 -1.49 -8.22 16 5 C 0.08 1.45 5.04 71.98 0.36 1.81 16 6 C -0.12 -1.81 5.26 29.85 0.16 -1.65 16 7 C 0.53 12.08 7.85 87.66 0.69 12.77 16 8 O -0.59 -19.10 16.24 -3.05 -0.05 -19.15 16 9 N -0.61 -12.61 3.33 -811.75 -2.70 -15.31 16 10 C 0.10 1.30 6.07 86.73 0.53 1.83 16 11 C -0.10 -1.49 3.03 -9.52 -0.03 -1.52 16 12 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 13 C -0.14 -1.62 9.14 71.98 0.66 -0.96 16 14 C 0.08 1.78 2.77 46.40 0.13 1.91 16 15 H 0.07 1.44 7.82 -2.39 -0.02 1.42 16 16 N -0.67 -19.89 6.00 -487.90 -2.93 -22.82 16 17 C 0.06 2.20 6.04 85.56 0.52 2.72 16 18 C 0.44 20.80 7.82 87.66 0.69 21.49 16 19 O -0.62 -34.06 15.78 -3.06 -0.05 -34.10 16 20 N -0.57 -29.58 5.29 -306.98 -1.62 -31.20 16 21 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -50.05 13.05 21.66 0.28 -49.76 16 25 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 29 C 0.11 2.91 6.56 86.86 0.57 3.48 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.81 7.79 -2.39 -0.02 0.79 16 34 H 0.06 0.75 8.14 -2.38 -0.02 0.74 16 35 H 0.05 0.66 7.87 -2.39 -0.02 0.64 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 0.91 7.83 -2.39 -0.02 0.90 16 38 H 0.05 0.94 8.04 -2.38 -0.02 0.92 16 39 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.10 0.78 7.82 -2.39 -0.02 0.76 16 43 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.35 10.68 8.23 -89.69 -0.74 9.94 16 47 H 0.07 2.06 8.09 -2.38 -0.02 2.04 16 48 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 49 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 50 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 51 H 0.06 1.69 8.04 -2.39 -0.02 1.68 16 52 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -74.18 426.60 -0.07 -74.25 By element: Atomic # 1 Polarization: 39.45 SS G_CDS: -0.56 Total: 38.89 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 7.02 Total: 22.29 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -6.97 Total: -119.10 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -1.59 Total: -61.48 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -74.18 -0.07 -74.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214171082.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.945 kcal (2) G-P(sol) polarization free energy of solvation -74.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds