Wall clock time and date at job start Wed Apr 1 2020 01:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00105 * 2 1 4 4 C 1.52998 * 109.47365 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47248 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47248 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47313 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99988 * 359.97438 * 7 6 5 9 9 N 1.34786 * 120.00123 * 180.02562 * 7 6 5 10 10 C 1.47485 * 127.03052 * 0.02562 * 9 7 6 11 11 C 1.54005 * 107.24392 * 154.61643 * 10 9 7 12 12 H 1.08993 * 110.32614 * 120.10270 * 11 10 9 13 13 C 1.53001 * 110.32503 * 242.31631 * 11 10 9 14 14 C 1.54616 * 105.04550 * 1.20635 * 11 10 9 15 15 H 1.09002 * 110.74101 * 263.51575 * 14 11 10 16 16 N 1.46899 * 110.74125 * 140.36665 * 14 11 10 17 17 C 1.46896 * 110.99966 * 154.99732 * 16 14 11 18 18 C 1.50702 * 109.47193 * 180.02562 * 17 16 14 19 19 O 1.21301 * 119.99779 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00312 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99906 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00064 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99593 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00503 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99821 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47169 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47204 * 120.00106 * 25 23 21 28 28 H 1.48497 * 109.47101 * 239.99807 * 25 23 21 29 29 C 1.48377 * 127.17223 * 179.81806 * 9 7 6 30 30 H 1.08999 * 109.46765 * 299.99753 * 1 2 3 31 31 H 1.09004 * 109.46992 * 59.99624 * 1 2 3 32 32 H 1.08992 * 109.46740 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46949 * 60.00014 * 3 2 1 34 34 H 1.08995 * 109.47400 * 300.00233 * 3 2 1 35 35 H 1.08999 * 109.47445 * 60.00269 * 4 3 2 36 36 H 1.09005 * 109.46853 * 300.00462 * 4 3 2 37 37 H 1.09000 * 109.47482 * 60.00176 * 5 4 3 38 38 H 1.08995 * 109.47189 * 299.99934 * 5 4 3 39 39 H 1.09006 * 109.47157 * 59.99713 * 6 5 4 40 40 H 1.09007 * 109.47351 * 300.00279 * 6 5 4 41 41 H 1.09002 * 109.91598 * 35.15729 * 10 9 7 42 42 H 1.08999 * 109.91369 * 274.06810 * 10 9 7 43 43 H 1.09002 * 109.47188 * 58.54367 * 13 11 10 44 44 H 1.08995 * 109.47348 * 178.54560 * 13 11 10 45 45 H 1.09002 * 109.47358 * 298.54568 * 13 11 10 46 46 H 1.00908 * 110.99778 * 31.04873 * 16 14 11 47 47 H 1.08999 * 109.47699 * 300.00363 * 17 16 14 48 48 H 1.09001 * 109.46811 * 60.00849 * 17 16 14 49 49 H 0.96997 * 120.00063 * 0.02562 * 20 18 17 50 50 H 0.96998 * 120.00562 * 179.97438 * 24 23 21 51 51 H 1.09005 * 110.51886 * 100.79006 * 29 9 7 52 52 H 1.09006 * 110.83140 * 337.82723 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6830 2.4616 -0.0013 7 6 6.2960 3.8383 0.0000 8 8 5.5831 4.8195 0.0013 9 7 7.6364 3.9792 -0.0014 10 6 8.6429 2.9011 -0.0046 11 6 9.9250 3.4754 -0.6356 12 1 10.7520 3.4220 0.0723 13 6 10.2720 2.7167 -1.9181 14 6 9.5881 4.9496 -0.9580 15 1 9.2819 5.0569 -1.9986 16 7 10.7327 5.8215 -0.6621 17 6 10.6824 7.0482 -1.4686 18 6 11.8700 7.9153 -1.1389 19 8 12.6791 7.5473 -0.3134 20 7 12.0333 9.0997 -1.7610 21 6 13.1135 9.8887 -1.4605 22 1 13.8338 9.5610 -0.7257 23 6 13.2814 11.1100 -2.1016 24 7 12.4047 11.5090 -2.9954 25 14 14.7535 12.1847 -1.6928 26 1 15.5856 11.5134 -0.6622 27 1 15.5637 12.4014 -2.9182 28 1 14.2819 13.4936 -1.1735 29 6 8.4044 5.2488 -0.0042 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8568 0.6440 -0.8909 36 1 3.8575 0.6435 0.8891 37 1 3.8366 3.1228 0.8904 38 1 3.8359 3.1239 -0.8895 39 1 6.0040 1.9214 -0.8920 40 1 6.0054 1.9199 0.8880 41 1 8.2831 2.0591 -0.5959 42 1 8.8443 2.5782 1.0168 43 1 9.4411 2.7904 -2.6199 44 1 11.1657 3.1506 -2.3664 45 1 10.4561 1.6687 -1.6819 46 1 11.6048 5.3331 -0.8009 47 1 10.7053 6.7885 -2.5270 48 1 9.7633 7.5909 -1.2474 49 1 11.3861 9.3942 -2.4208 50 1 12.5217 12.3617 -3.4427 51 1 8.7665 5.4785 0.9980 52 1 7.7975 6.0681 -0.3896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214288373.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:04 Heat of formation + Delta-G solvation = -154.448413 kcal Electronic energy + Delta-G solvation = -29062.765590 eV Core-core repulsion = 24867.680034 eV Total energy + Delta-G solvation = -4195.085555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24207 -40.17624 -39.20722 -38.84495 -36.22097 -35.70499 -35.54868 -33.46269 -33.20414 -31.33393 -29.86775 -28.06856 -27.42134 -27.14578 -25.98887 -24.67549 -23.06122 -22.10278 -21.43396 -20.96817 -20.21100 -19.86060 -18.18096 -17.75163 -17.45044 -17.25790 -17.13066 -16.76508 -16.63811 -16.35161 -16.17514 -15.79097 -15.65525 -15.24063 -15.13808 -14.93887 -14.48948 -14.26393 -14.04947 -13.85861 -13.60610 -13.50660 -13.46455 -13.43044 -13.01889 -12.92364 -12.74922 -12.61096 -12.42595 -12.41397 -12.31432 -12.11985 -12.02366 -11.92806 -11.86257 -11.60575 -11.56780 -11.52139 -10.90393 -10.62537 -10.36329 -10.02800 -9.77727 -9.39676 -8.47556 -5.96593 1.36234 1.41719 1.56022 1.61777 1.87726 2.03159 2.28703 2.80300 2.91436 3.19743 3.34214 3.49996 3.61583 3.79822 3.94588 3.96201 3.99723 4.23339 4.29386 4.30279 4.33323 4.34560 4.40129 4.45834 4.50575 4.52487 4.54397 4.55109 4.63377 4.73069 4.75542 4.79420 4.81788 4.85963 4.90741 4.91841 4.99170 5.03026 5.11081 5.26240 5.28861 5.38473 5.39687 5.40873 5.87757 6.07300 6.21819 6.35788 6.56940 6.58238 7.11333 7.13273 7.54524 8.09089 8.70074 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.001538 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.339482 B =18200.367501 C =18984.524989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.055 3.945 4 C -0.109 4.109 5 C -0.098 4.098 6 C -0.124 4.124 7 C 0.522 3.478 8 O -0.593 6.593 9 N -0.622 5.622 10 C 0.108 3.892 11 C -0.104 4.104 12 H 0.097 0.903 13 C -0.141 4.141 14 C 0.081 3.919 15 H 0.062 0.938 16 N -0.666 5.666 17 C 0.065 3.935 18 C 0.439 3.561 19 O -0.620 6.620 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.081 0.919 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.272 1.272 29 C 0.112 3.888 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.354 0.646 47 H 0.068 0.932 48 H 0.095 0.905 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.071 0.929 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.103 -26.027 1.907 31.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.022 4.022 4 C -0.146 4.146 5 C -0.136 4.136 6 C -0.163 4.163 7 C 0.313 3.687 8 O -0.474 6.474 9 N -0.356 5.356 10 C -0.014 4.014 11 C -0.123 4.123 12 H 0.115 0.885 13 C -0.199 4.199 14 C -0.030 4.030 15 H 0.080 0.920 16 N -0.300 5.300 17 C -0.068 4.068 18 C 0.227 3.773 19 O -0.507 6.507 20 N -0.210 5.210 21 C -0.463 4.463 22 H 0.099 0.901 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.012 4.012 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.102 0.898 46 H 0.174 0.826 47 H 0.086 0.914 48 H 0.113 0.887 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.090 0.910 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.234 -25.491 2.884 31.473 hybrid contribution 0.386 1.397 -1.026 1.776 sum -17.847 -24.094 1.858 30.042 Atomic orbital electron populations 1.22913 0.79737 1.03793 1.00697 1.87814 1.21288 1.28917 1.95596 1.22639 0.94709 0.84217 1.00615 1.21431 0.92517 0.96596 1.04085 1.21167 0.93340 0.96443 1.02653 1.21665 0.95868 0.91896 1.06865 1.21187 0.79954 0.92883 0.74628 1.90702 1.61035 1.43091 1.52597 1.48948 1.05050 1.09002 1.72558 1.22399 0.86381 0.90086 1.02566 1.22285 0.98383 0.92278 0.99393 0.88463 1.21864 1.01520 1.01048 0.95427 1.22652 0.90467 0.92644 0.97225 0.92019 1.59945 1.05764 1.05962 1.58331 1.21576 0.96517 0.92032 0.96629 1.20781 0.89056 0.83369 0.84136 1.90491 1.48087 1.74322 1.37757 1.41946 1.24250 1.16989 1.37842 1.19726 1.03393 1.00320 1.22890 0.90148 1.26048 1.01345 0.98241 0.95597 1.69679 1.36914 1.22929 1.26682 0.84864 0.77467 0.77654 0.78319 1.19621 1.19521 1.19772 1.22387 0.91592 0.87033 1.00180 0.93415 0.93422 0.88457 0.93067 0.93057 0.90235 0.90289 0.92360 0.92314 0.86172 0.86318 0.87464 0.89570 0.92243 0.93044 0.89775 0.82567 0.91407 0.88718 0.77076 0.91316 0.91030 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.54 10.70 -148.98 -1.59 -8.13 16 3 C 0.05 0.72 5.94 71.98 0.43 1.14 16 4 C -0.11 -1.19 5.58 30.59 0.17 -1.02 16 5 C -0.10 -1.36 4.50 30.59 0.14 -1.22 16 6 C -0.12 -1.47 4.78 29.85 0.14 -1.32 16 7 C 0.52 11.50 7.89 87.65 0.69 12.19 16 8 O -0.59 -19.02 16.21 -3.04 -0.05 -19.07 16 9 N -0.62 -12.47 3.30 -808.70 -2.67 -15.14 16 10 C 0.11 1.31 6.41 86.53 0.55 1.87 16 11 C -0.10 -1.58 3.08 -9.90 -0.03 -1.61 16 12 H 0.10 1.55 7.94 -2.39 -0.02 1.53 16 13 C -0.14 -1.67 8.89 71.98 0.64 -1.03 16 14 C 0.08 1.83 2.94 46.13 0.14 1.96 16 15 H 0.06 1.39 7.54 -2.39 -0.02 1.38 16 16 N -0.67 -19.97 5.98 -489.33 -2.93 -22.89 16 17 C 0.06 2.23 6.03 85.56 0.52 2.75 16 18 C 0.44 20.87 7.82 87.66 0.69 21.55 16 19 O -0.62 -33.99 15.78 -3.10 -0.05 -34.04 16 20 N -0.57 -29.64 5.29 -306.98 -1.62 -31.26 16 21 C -0.33 -19.06 9.68 84.04 0.81 -18.24 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 25 Si 0.99 43.11 29.55 68.60 2.03 45.13 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 29 C 0.11 2.85 6.78 86.68 0.59 3.43 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 38 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 39 H 0.12 0.84 7.91 -2.38 -0.02 0.82 16 40 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.11 0.68 7.08 -2.39 -0.02 0.67 16 42 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 43 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 44 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.35 10.68 8.03 -89.69 -0.72 9.96 16 47 H 0.07 2.04 8.08 -2.39 -0.02 2.02 16 48 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 49 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 50 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 51 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 52 H 0.06 1.73 7.87 -2.38 -0.02 1.71 16 Total: -1.00 -75.85 426.03 0.04 -75.81 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -0.54 Total: 37.73 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 7.19 Total: 21.74 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -6.94 Total: -119.17 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -1.69 Total: -61.24 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -75.85 0.04 -75.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214288373.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.641 kcal (2) G-P(sol) polarization free energy of solvation -75.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds