Wall clock time and date at job start Wed Apr 1 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64104 * 2 1 4 4 C 1.54327 * 110.72340 * 236.85492 * 2 1 3 5 5 N 1.47025 * 107.27105 * 219.44464 * 4 2 1 6 6 C 1.34774 * 125.64502 * 178.97339 * 5 4 2 7 7 O 1.21283 * 119.99483 * 179.97438 * 6 5 4 8 8 C 1.50697 * 120.00172 * 359.97438 * 6 5 4 9 9 O 1.42895 * 109.47303 * 179.97438 * 8 6 5 10 10 C 1.42894 * 114.00461 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47250 * 59.99782 * 10 9 8 12 12 C 1.53000 * 109.47360 * 179.97438 * 10 9 8 13 13 C 1.53003 * 109.46683 * 299.99971 * 10 9 8 14 14 C 1.47421 * 108.70178 * 358.93715 * 5 4 2 15 15 C 1.54904 * 104.83620 * 24.13268 * 14 5 4 16 16 H 1.08999 * 111.00765 * 81.06058 * 15 14 5 17 17 N 1.46903 * 111.00889 * 204.91667 * 15 14 5 18 18 C 1.46906 * 110.99493 * 267.19625 * 17 15 14 19 19 C 1.50707 * 109.46714 * 179.97438 * 18 17 15 20 20 O 1.21291 * 119.99886 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99579 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99357 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00460 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99571 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00131 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00027 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47204 * 90.00042 * 26 24 22 28 28 H 1.48500 * 109.47226 * 209.99506 * 26 24 22 29 29 H 1.48500 * 109.47360 * 329.99803 * 26 24 22 30 30 H 1.09002 * 109.47153 * 181.69040 * 1 2 3 31 31 H 1.09001 * 109.46832 * 61.69231 * 1 2 3 32 32 H 1.09004 * 109.47261 * 301.69213 * 1 2 3 33 33 H 1.08999 * 109.87685 * 338.86158 * 4 2 1 34 34 H 1.08998 * 109.88102 * 99.87410 * 4 2 1 35 35 H 1.09002 * 109.47186 * 300.00046 * 8 6 5 36 36 H 1.08995 * 109.47255 * 60.00047 * 8 6 5 37 37 H 1.08995 * 109.47427 * 60.00368 * 11 10 9 38 38 H 1.09004 * 109.47141 * 180.02562 * 11 10 9 39 39 H 1.09006 * 109.47272 * 300.00405 * 11 10 9 40 40 H 1.09000 * 109.47189 * 60.00110 * 12 10 9 41 41 H 1.09004 * 109.46903 * 179.97438 * 12 10 9 42 42 H 1.08995 * 109.46981 * 299.99426 * 12 10 9 43 43 H 1.08993 * 109.47379 * 59.99983 * 13 10 9 44 44 H 1.09008 * 109.46854 * 180.02562 * 13 10 9 45 45 H 1.09000 * 109.47414 * 299.99612 * 13 10 9 46 46 H 1.09007 * 110.36440 * 142.96663 * 14 5 4 47 47 H 1.08996 * 110.37385 * 265.17849 * 14 5 4 48 48 H 1.00905 * 110.99839 * 31.14116 * 17 15 14 49 49 H 1.09003 * 109.46794 * 299.99011 * 18 17 15 50 50 H 1.08996 * 109.47360 * 59.99813 * 18 17 15 51 51 H 0.96997 * 120.00156 * 359.97438 * 21 19 18 52 52 H 0.96996 * 120.00331 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 3.2446 -1.5495 -0.7415 6 6 3.9923 -2.3811 -1.4936 7 8 4.9384 -2.9585 -1.0010 8 6 3.6530 -2.5936 -2.9464 9 8 4.5843 -3.5105 -3.5240 10 6 4.3509 -3.7821 -4.9073 11 6 4.4450 -2.4803 -5.7056 12 6 5.4021 -4.7697 -5.4177 13 6 2.9560 -4.3866 -5.0800 14 6 3.4633 -1.2508 0.6855 15 6 2.0790 -0.7974 1.2125 16 1 1.4452 -1.6559 1.4348 17 7 2.2218 0.0681 2.3909 18 6 2.1559 -0.7162 3.6312 19 6 2.3063 0.2034 4.8157 20 8 2.4544 1.3949 4.6434 21 7 2.2763 -0.2982 6.0662 22 6 2.4137 0.5385 7.1437 23 1 2.5464 1.5992 6.9903 24 6 2.3823 0.0215 8.4331 25 7 2.5145 0.8232 9.4659 26 14 2.1521 -1.8132 8.6984 27 1 3.4791 -2.4791 8.7305 28 1 1.4518 -2.0429 9.9876 29 1 1.3425 -2.3762 7.5881 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3633 0.4873 -0.9048 32 1 -0.3634 0.5399 0.8744 33 1 1.3130 -1.4732 -1.5799 34 1 2.3716 -0.0992 -1.9989 35 1 2.6446 -2.9993 -3.0284 36 1 3.7056 -1.6417 -3.4748 37 1 5.4386 -2.0496 -5.5826 38 1 4.2665 -2.6874 -6.7608 39 1 3.6963 -1.7763 -5.3421 40 1 5.3355 -5.6973 -4.8491 41 1 5.2237 -4.9772 -6.4728 42 1 6.3956 -4.3386 -5.2947 43 1 2.2074 -3.6827 -4.7166 44 1 2.7781 -4.5942 -6.1352 45 1 2.8890 -5.3141 -4.5114 46 1 3.7960 -2.1446 1.2135 47 1 4.1946 -0.4504 0.7979 48 1 3.0767 0.6022 2.3458 49 1 1.1946 -1.2271 3.6873 50 1 2.9597 -1.4523 3.6388 51 1 2.1575 -1.2509 6.2040 52 1 2.4922 0.4624 10.3659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214470407.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:09 Heat of formation + Delta-G solvation = -110.974488 kcal Electronic energy + Delta-G solvation = -30002.038256 eV Core-core repulsion = 25808.837871 eV Total energy + Delta-G solvation = -4193.200385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59264 -39.42964 -38.51042 -37.81335 -34.88026 -33.89689 -33.83951 -32.69729 -31.67045 -30.00853 -28.41524 -27.92168 -27.41123 -26.61846 -25.90722 -23.87835 -22.34997 -20.73124 -20.50978 -19.70271 -19.36757 -18.36687 -17.64028 -16.94541 -16.71736 -16.22804 -15.94456 -15.56521 -15.41427 -14.89358 -14.82336 -14.37210 -14.31889 -14.08941 -13.79279 -13.70513 -13.46366 -13.34740 -13.10641 -12.98956 -12.68350 -12.54384 -12.49631 -12.45927 -12.29182 -12.24930 -12.21018 -12.07173 -11.80403 -11.74030 -11.37249 -11.20724 -11.13088 -11.08747 -10.89778 -10.59920 -10.04015 -9.98850 -9.98005 -9.58393 -8.96978 -8.62891 -8.25387 -8.18166 -6.31990 -3.83578 2.31711 2.34124 3.02485 3.06971 3.15251 3.40737 3.71686 3.92533 4.09617 4.12453 4.26721 4.32937 4.34532 4.50794 4.57341 4.62031 4.65072 4.78200 4.86597 4.92564 4.99582 5.03054 5.06739 5.17908 5.20713 5.21624 5.24524 5.30662 5.36790 5.36868 5.48416 5.51150 5.53709 5.58617 5.64410 5.72112 5.76197 5.78628 5.79612 5.87576 5.91613 6.04257 6.13669 6.72319 6.98646 7.18652 7.43718 7.56646 7.90221 8.13037 8.58150 8.93692 9.41156 9.80547 10.81003 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.001885 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.657565 B =14853.460311 C =15574.796904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.094 0.906 4 C 0.099 3.901 5 N -0.616 5.616 6 C 0.528 3.472 7 O -0.519 6.519 8 C 0.046 3.954 9 O -0.351 6.351 10 C 0.104 3.896 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.180 4.180 14 C 0.077 3.923 15 C 0.081 3.919 16 H 0.094 0.906 17 N -0.649 5.649 18 C 0.045 3.955 19 C 0.449 3.551 20 O -0.565 6.565 21 N -0.589 5.589 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.880 5.880 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.355 0.645 49 H 0.089 0.911 50 H 0.047 0.953 51 H 0.371 0.629 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 -10.392 -31.894 33.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.112 0.888 4 C -0.024 4.024 5 N -0.353 5.353 6 C 0.315 3.685 7 O -0.393 6.393 8 C -0.034 4.034 9 O -0.270 6.270 10 C 0.065 3.935 11 C -0.238 4.238 12 C -0.194 4.194 13 C -0.238 4.238 14 C -0.047 4.047 15 C -0.031 4.031 16 H 0.112 0.888 17 N -0.281 5.281 18 C -0.087 4.087 19 C 0.235 3.765 20 O -0.447 6.447 21 N -0.229 5.229 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.176 0.824 49 H 0.107 0.893 50 H 0.065 0.935 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.365 -9.828 -31.419 33.005 hybrid contribution 0.386 -1.711 0.266 1.774 sum -1.979 -11.538 -31.153 33.280 Atomic orbital electron populations 1.21692 0.93213 1.01912 1.02621 1.22203 0.96947 0.99857 0.92066 0.88777 1.22291 0.87388 0.94776 0.97932 1.48281 1.30613 1.44980 1.11404 1.19942 0.82339 0.78630 0.87557 1.90753 1.27994 1.47180 1.73392 1.22159 0.94456 0.95189 0.91605 1.88106 1.52152 1.63225 1.23528 1.21612 0.95570 0.95007 0.81324 1.22461 1.02975 0.97545 1.00808 1.21745 0.98375 0.98687 1.00631 1.22460 0.96513 1.01895 1.02908 1.23149 0.99047 1.01707 0.80805 1.22907 0.94183 0.95305 0.90729 0.88764 1.60140 1.44813 1.24010 0.99137 1.21799 1.01841 0.95178 0.89929 1.19654 0.84245 0.89120 0.83479 1.90570 1.53323 1.15811 1.84975 1.42203 1.65920 1.08898 1.05840 1.19430 1.47110 0.94017 0.82872 0.86252 1.25042 0.97598 0.98281 0.95204 1.69618 1.48917 1.34905 0.98582 0.86676 0.78946 0.85108 0.78686 1.19619 1.20153 1.19471 0.92829 0.92642 0.90869 0.91109 0.91178 0.90159 0.90161 0.91442 0.91197 0.92202 0.91590 0.90956 0.91576 0.92196 0.91199 0.91457 0.90258 0.90917 0.82439 0.89270 0.93451 0.79668 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.13 37.16 0.34 -0.72 16 2 C -0.09 -0.78 3.24 -88.78 -0.29 -1.06 16 3 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.10 0.71 6.08 -3.06 -0.02 0.69 16 5 N -0.62 -6.39 3.33 -170.52 -0.57 -6.95 16 6 C 0.53 6.51 7.93 -10.99 -0.09 6.42 16 7 O -0.52 -8.87 16.76 -14.35 -0.24 -9.11 16 8 C 0.05 0.40 4.81 36.00 0.17 0.57 16 9 O -0.35 -3.78 9.52 -55.14 -0.52 -4.31 16 10 C 0.10 0.74 1.14 -90.62 -0.10 0.63 16 11 C -0.18 -0.99 8.25 37.16 0.31 -0.68 16 12 C -0.14 -0.88 8.84 37.16 0.33 -0.55 16 13 C -0.18 -0.98 8.25 37.16 0.31 -0.67 16 14 C 0.08 0.88 6.50 -2.53 -0.02 0.86 16 15 C 0.08 0.85 2.83 -65.56 -0.19 0.67 16 16 H 0.09 0.96 7.72 -51.93 -0.40 0.56 16 17 N -0.65 -9.11 6.04 -105.72 -0.64 -9.75 16 18 C 0.05 0.71 6.03 -4.97 -0.03 0.68 16 19 C 0.45 9.94 7.82 -10.98 -0.09 9.86 16 20 O -0.56 -14.82 15.78 5.55 0.09 -14.73 16 21 N -0.59 -13.88 5.09 -10.96 -0.06 -13.94 16 22 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 23 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 24 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 25 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 26 Si 0.88 19.37 27.73 -169.99 -4.71 14.66 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 30 H 0.05 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.40 7.82 -51.93 -0.41 -0.01 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.53 6.42 -51.93 -0.33 0.20 16 36 H 0.08 0.54 6.41 -51.93 -0.33 0.20 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.29 6.54 -51.93 -0.34 -0.05 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.28 6.54 -51.93 -0.34 -0.06 16 44 H 0.07 0.28 8.14 -51.92 -0.42 -0.15 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 47 H 0.07 0.85 7.75 -51.93 -0.40 0.45 16 48 H 0.35 5.26 7.89 -39.29 -0.31 4.95 16 49 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 50 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 52 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 415.96 15.07 6.27 6.27 Total: -1.00 -35.73 415.96 -8.21 -43.94 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -8.99 Total: 9.84 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 0.39 Total: 9.00 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.49 Total: -55.55 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.68 Total: -28.15 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.73 -8.21 -43.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214470407.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.039 kcal (2) G-P(sol) polarization free energy of solvation -35.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds