Wall clock time and date at job start Wed Apr 1 2020 01:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00271 * 2 1 4 4 H 1.09001 * 109.47505 * 330.00434 * 3 2 1 5 5 C 1.53002 * 109.46866 * 90.00413 * 3 2 1 6 6 C 1.53000 * 109.47444 * 210.00329 * 3 2 1 7 7 C 1.52999 * 109.47025 * 64.99992 * 6 3 2 8 8 C 1.50705 * 109.47089 * 180.02562 * 7 6 3 9 9 O 1.21282 * 119.99989 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00262 * 180.02562 * 8 7 6 11 11 C 1.47485 * 127.02912 * 0.02562 * 10 8 7 12 12 C 1.54005 * 107.24392 * 154.61510 * 11 10 8 13 13 H 1.08993 * 110.32614 * 120.10270 * 12 11 10 14 14 C 1.53007 * 110.32382 * 242.21213 * 12 11 10 15 15 C 1.54616 * 105.04550 * 1.20635 * 12 11 10 16 16 H 1.09002 * 110.74101 * 263.51575 * 15 12 11 17 17 N 1.46899 * 110.74125 * 140.36665 * 15 12 11 18 18 C 1.46896 * 110.99966 * 154.99732 * 17 15 12 19 19 C 1.50702 * 109.47193 * 180.02562 * 18 17 15 20 20 O 1.21301 * 119.99779 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00312 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.99906 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00064 * 0.02562 * 22 21 19 24 24 C 1.38945 * 119.99593 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00503 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99821 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47063 * 59.99921 * 26 24 22 28 28 H 1.48500 * 109.46892 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47259 * 299.99862 * 26 24 22 30 30 C 1.48377 * 127.17363 * 179.81545 * 10 8 7 31 31 H 1.09005 * 109.47101 * 59.99503 * 1 2 3 32 32 H 1.08996 * 109.47766 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47024 * 299.99671 * 1 2 3 34 34 H 1.08998 * 109.47190 * 60.00249 * 5 3 2 35 35 H 1.09000 * 109.47292 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.47236 * 299.99805 * 5 3 2 37 37 H 1.09009 * 109.46922 * 305.00462 * 6 3 2 38 38 H 1.08997 * 109.47060 * 185.00772 * 6 3 2 39 39 H 1.08996 * 109.46754 * 60.00682 * 7 6 3 40 40 H 1.08995 * 109.47341 * 300.00157 * 7 6 3 41 41 H 1.09002 * 109.91598 * 35.15596 * 11 10 8 42 42 H 1.08999 * 109.91369 * 274.06677 * 11 10 8 43 43 H 1.08999 * 109.46663 * 58.54692 * 14 12 11 44 44 H 1.09003 * 109.46588 * 178.54263 * 14 12 11 45 45 H 1.08997 * 109.47108 * 298.54489 * 14 12 11 46 46 H 1.00908 * 110.99778 * 31.04873 * 17 15 12 47 47 H 1.08999 * 109.47699 * 300.00363 * 18 17 15 48 48 H 1.09001 * 109.46811 * 60.00849 * 18 17 15 49 49 H 0.96997 * 120.00063 * 0.02562 * 21 19 18 50 50 H 0.96998 * 120.00562 * 179.97438 * 25 24 22 51 51 H 1.09005 * 110.51886 * 100.79140 * 30 10 8 52 52 H 1.09003 * 110.69336 * 337.76106 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7712 1.4425 6 6 3.3589 1.2632 -0.7213 7 6 3.1382 0.9184 -2.1955 8 6 4.4666 0.8763 -2.9059 9 8 5.4892 1.0995 -2.2932 10 7 4.5183 0.5905 -4.2220 11 6 3.3800 0.2966 -5.1124 12 6 3.8126 0.6660 -6.5436 13 1 3.7655 -0.2093 -7.1912 14 6 2.9243 1.7828 -7.0956 15 6 5.2728 1.1558 -6.4077 16 1 5.3108 2.2432 -6.3429 17 7 6.0895 0.6746 -7.5299 18 6 7.2435 1.5548 -7.7565 19 6 8.0555 1.0308 -8.9129 20 8 7.7068 0.0234 -9.4917 21 7 9.1691 1.6814 -9.3041 22 6 9.9080 1.2043 -10.3558 23 1 9.5975 0.3074 -10.8711 24 6 11.0563 1.8749 -10.7587 25 7 11.4344 2.9659 -10.1315 26 14 12.0628 1.2253 -12.1921 27 1 11.2196 1.1917 -13.4140 28 1 13.2304 2.1141 -12.4201 29 1 12.5388 -0.1466 -11.8813 30 6 5.7296 0.5107 -5.0752 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.8830 1.0772 1.9563 35 1 2.6616 2.7667 1.4426 36 1 1.2570 1.8013 1.9564 37 1 3.9931 0.5049 -0.2618 38 1 3.8427 2.2369 -0.6442 39 1 2.5041 1.6766 -2.6549 40 1 2.6544 -0.0552 -2.2725 41 1 2.5160 0.8934 -4.8200 42 1 3.1329 -0.7638 -5.0614 43 1 2.9906 2.6549 -6.4451 44 1 3.2585 2.0509 -8.0979 45 1 1.8910 1.4382 -7.1372 46 1 5.5346 0.5829 -8.3677 47 1 6.8935 2.5613 -7.9854 48 1 7.8625 1.5805 -6.8597 49 1 9.4482 2.4868 -8.8411 50 1 12.2363 3.4338 -10.4125 51 1 6.0198 -0.5285 -5.2305 52 1 6.5494 1.0780 -4.6343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214478044.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:31 Heat of formation + Delta-G solvation = -125.534970 kcal Electronic energy + Delta-G solvation = -29641.278805 eV Core-core repulsion = 25447.447031 eV Total energy + Delta-G solvation = -4193.831774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.34560 -38.96411 -38.38856 -37.79751 -34.73426 -34.06820 -33.78822 -32.53144 -31.21340 -30.83008 -28.90479 -27.15390 -26.68717 -26.42425 -24.73696 -23.89766 -22.12021 -21.40553 -20.42639 -19.48838 -19.06401 -17.86998 -17.40428 -17.19970 -16.56583 -15.88804 -15.86355 -15.43178 -15.36930 -15.11392 -14.97413 -14.57119 -14.21913 -13.89790 -13.79070 -13.68124 -13.51404 -13.36780 -13.16471 -13.04606 -12.84323 -12.68083 -12.34706 -12.21894 -12.07449 -11.89081 -11.70205 -11.59784 -11.50739 -11.45401 -11.25560 -11.14357 -11.00256 -10.97326 -10.70694 -10.43730 -10.20882 -10.09043 -9.89388 -9.49710 -8.84850 -8.47037 -8.13125 -7.96033 -6.41017 -3.82127 2.52394 2.76491 3.20727 3.26563 3.30866 3.36384 3.90399 4.04870 4.13578 4.25186 4.36814 4.41591 4.53104 4.62614 4.66627 4.82453 4.86648 4.91657 4.93413 5.04846 5.10949 5.18422 5.19919 5.22089 5.23067 5.25203 5.30302 5.31927 5.32726 5.49037 5.54921 5.63046 5.68524 5.74203 5.74930 5.80350 5.84679 5.88809 5.94706 5.96645 6.00095 6.14073 6.29197 6.79754 7.16932 7.40914 7.55473 7.59442 8.04156 8.06221 8.61296 9.17982 9.54431 10.05584 10.76532 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.001702 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.428630 B =16445.350481 C =17127.254510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.084 3.916 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.102 4.102 7 C -0.133 4.133 8 C 0.531 3.469 9 O -0.541 6.541 10 N -0.623 5.623 11 C 0.109 3.891 12 C -0.111 4.111 13 H 0.098 0.902 14 C -0.145 4.145 15 C 0.077 3.923 16 H 0.059 0.941 17 N -0.656 5.656 18 C 0.050 3.950 19 C 0.441 3.559 20 O -0.584 6.584 21 N -0.562 5.562 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 C 0.113 3.887 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.354 0.646 47 H 0.045 0.955 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.085 0.915 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.337 0.408 18.275 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.140 4.140 7 C -0.173 4.173 8 C 0.320 3.680 9 O -0.419 6.419 10 N -0.358 5.358 11 C -0.015 4.015 12 C -0.130 4.130 13 H 0.116 0.884 14 C -0.203 4.203 15 C -0.034 4.034 16 H 0.077 0.923 17 N -0.290 5.290 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.009 4.009 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.175 0.825 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.103 0.897 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.385 -0.609 18.658 29.922 hybrid contribution 0.061 1.256 -0.891 1.541 sum -23.324 0.647 17.767 29.328 Atomic orbital electron populations 1.22779 0.81303 1.02736 0.99833 1.87950 1.19417 1.27871 1.95074 1.22203 0.94828 0.84592 0.95752 0.92126 1.22268 1.02301 1.01974 0.96691 1.21481 0.95641 1.03916 0.92914 1.21609 0.95029 1.04465 0.96177 1.20349 0.91592 0.75985 0.80033 1.90722 1.36579 1.49629 1.64923 1.48854 1.09408 1.69699 1.07872 1.22155 0.89381 1.00869 0.89061 1.22301 0.94658 1.00081 0.95991 0.88359 1.21884 0.99257 0.97743 1.01398 1.22654 0.91280 0.97377 0.92100 0.92292 1.60006 1.09922 1.50315 1.08723 1.21754 0.93300 0.94025 0.99221 1.19766 0.83898 0.86743 0.86994 1.90523 1.71436 1.26581 1.58281 1.41856 1.21917 1.25694 1.30427 1.19657 1.04629 1.10403 1.08357 0.87945 1.25264 0.97595 0.95862 0.99168 1.69601 1.25654 1.17553 1.41425 0.85911 0.78777 0.78589 0.80892 1.19931 1.20984 1.19871 1.22562 0.87658 1.02268 0.88456 0.94063 0.89678 0.94208 0.91534 0.91389 0.92540 0.90075 0.89751 0.89366 0.88320 0.90787 0.91134 0.92547 0.92001 0.92106 0.82519 0.93726 0.89529 0.77440 0.91801 0.89680 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.10 9.88 -35.23 -0.35 -3.45 16 3 C 0.08 0.58 2.72 -26.73 -0.07 0.50 16 4 H 0.06 0.33 7.79 -51.93 -0.40 -0.07 16 5 C -0.17 -1.08 9.53 37.16 0.35 -0.72 16 6 C -0.10 -0.86 4.21 -26.73 -0.11 -0.98 16 7 C -0.13 -1.10 4.68 -27.88 -0.13 -1.23 16 8 C 0.53 6.46 7.89 -10.98 -0.09 6.37 16 9 O -0.54 -8.76 16.21 5.56 0.09 -8.67 16 10 N -0.62 -7.02 3.30 -169.55 -0.56 -7.58 16 11 C 0.11 0.89 6.41 -2.98 -0.02 0.87 16 12 C -0.11 -1.00 3.08 -89.24 -0.27 -1.28 16 13 H 0.10 0.92 7.94 -51.93 -0.41 0.50 16 14 C -0.15 -1.10 8.90 37.16 0.33 -0.77 16 15 C 0.08 0.93 2.94 -65.84 -0.19 0.73 16 16 H 0.06 0.72 7.55 -51.93 -0.39 0.32 16 17 N -0.66 -10.06 5.98 -106.02 -0.63 -10.69 16 18 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 19 C 0.44 10.33 7.82 -10.98 -0.09 10.24 16 20 O -0.58 -15.67 15.78 5.54 0.09 -15.59 16 21 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 22 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 26 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 30 C 0.11 1.48 6.78 -1.99 -0.01 1.47 16 31 H 0.04 0.17 8.09 -51.93 -0.42 -0.25 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.04 0.17 7.87 -51.93 -0.41 -0.24 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.30 7.87 -51.93 -0.41 -0.10 16 37 H 0.08 0.83 8.10 -51.92 -0.42 0.41 16 38 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.09 0.55 7.91 -51.93 -0.41 0.14 16 40 H 0.10 0.76 7.82 -51.93 -0.41 0.36 16 41 H 0.07 0.46 7.08 -51.93 -0.37 0.09 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.35 5.47 8.03 -39.29 -0.32 5.15 16 47 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 48 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 49 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 50 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 51 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 52 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 LS Contribution 424.08 15.07 6.39 6.39 Total: -1.00 -33.72 424.08 -8.07 -41.78 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -9.25 Total: 10.70 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 0.52 Total: 9.26 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.53 Total: -56.52 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.17 Total: -27.71 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.72 -8.07 -41.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214478044.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.753 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds