Wall clock time and date at job start Wed Apr 1 2020 01:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00271 * 2 1 4 4 H 1.09001 * 109.47505 * 330.00434 * 3 2 1 5 5 C 1.53002 * 109.46866 * 90.00413 * 3 2 1 6 6 C 1.53000 * 109.47444 * 210.00329 * 3 2 1 7 7 C 1.52999 * 109.47025 * 64.99992 * 6 3 2 8 8 C 1.50705 * 109.47089 * 180.02562 * 7 6 3 9 9 O 1.21282 * 119.99989 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00262 * 180.02562 * 8 7 6 11 11 C 1.47485 * 127.02912 * 0.02562 * 10 8 7 12 12 C 1.54005 * 107.24392 * 154.61510 * 11 10 8 13 13 H 1.08993 * 110.32614 * 120.10270 * 12 11 10 14 14 C 1.53007 * 110.32382 * 242.21213 * 12 11 10 15 15 C 1.54616 * 105.04550 * 1.20635 * 12 11 10 16 16 H 1.09002 * 110.74101 * 263.51575 * 15 12 11 17 17 N 1.46899 * 110.74125 * 140.36665 * 15 12 11 18 18 C 1.46896 * 110.99966 * 154.99732 * 17 15 12 19 19 C 1.50702 * 109.47193 * 180.02562 * 18 17 15 20 20 O 1.21301 * 119.99779 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00312 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.99906 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00064 * 0.02562 * 22 21 19 24 24 C 1.38945 * 119.99593 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00503 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99821 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47063 * 59.99921 * 26 24 22 28 28 H 1.48500 * 109.46892 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47259 * 299.99862 * 26 24 22 30 30 C 1.48377 * 127.17363 * 179.81545 * 10 8 7 31 31 H 1.09005 * 109.47101 * 59.99503 * 1 2 3 32 32 H 1.08996 * 109.47766 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47024 * 299.99671 * 1 2 3 34 34 H 1.08998 * 109.47190 * 60.00249 * 5 3 2 35 35 H 1.09000 * 109.47292 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.47236 * 299.99805 * 5 3 2 37 37 H 1.09009 * 109.46922 * 305.00462 * 6 3 2 38 38 H 1.08997 * 109.47060 * 185.00772 * 6 3 2 39 39 H 1.08996 * 109.46754 * 60.00682 * 7 6 3 40 40 H 1.08995 * 109.47341 * 300.00157 * 7 6 3 41 41 H 1.09002 * 109.91598 * 35.15596 * 11 10 8 42 42 H 1.08999 * 109.91369 * 274.06677 * 11 10 8 43 43 H 1.08999 * 109.46663 * 58.54692 * 14 12 11 44 44 H 1.09003 * 109.46588 * 178.54263 * 14 12 11 45 45 H 1.08997 * 109.47108 * 298.54489 * 14 12 11 46 46 H 1.00908 * 110.99778 * 31.04873 * 17 15 12 47 47 H 1.08999 * 109.47699 * 300.00363 * 18 17 15 48 48 H 1.09001 * 109.46811 * 60.00849 * 18 17 15 49 49 H 0.96997 * 120.00063 * 0.02562 * 21 19 18 50 50 H 0.96998 * 120.00562 * 179.97438 * 25 24 22 51 51 H 1.09005 * 110.51886 * 100.79140 * 30 10 8 52 52 H 1.09003 * 110.69336 * 337.76106 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7712 1.4425 6 6 3.3589 1.2632 -0.7213 7 6 3.1382 0.9184 -2.1955 8 6 4.4666 0.8763 -2.9059 9 8 5.4892 1.0995 -2.2932 10 7 4.5183 0.5905 -4.2220 11 6 3.3800 0.2966 -5.1124 12 6 3.8126 0.6660 -6.5436 13 1 3.7655 -0.2093 -7.1912 14 6 2.9243 1.7828 -7.0956 15 6 5.2728 1.1558 -6.4077 16 1 5.3108 2.2432 -6.3429 17 7 6.0895 0.6746 -7.5299 18 6 7.2435 1.5548 -7.7565 19 6 8.0555 1.0308 -8.9129 20 8 7.7068 0.0234 -9.4917 21 7 9.1691 1.6814 -9.3041 22 6 9.9080 1.2043 -10.3558 23 1 9.5975 0.3074 -10.8711 24 6 11.0563 1.8749 -10.7587 25 7 11.4344 2.9659 -10.1315 26 14 12.0628 1.2253 -12.1921 27 1 11.2196 1.1917 -13.4140 28 1 13.2304 2.1141 -12.4201 29 1 12.5388 -0.1466 -11.8813 30 6 5.7296 0.5107 -5.0752 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.8830 1.0772 1.9563 35 1 2.6616 2.7667 1.4426 36 1 1.2570 1.8013 1.9564 37 1 3.9931 0.5049 -0.2618 38 1 3.8427 2.2369 -0.6442 39 1 2.5041 1.6766 -2.6549 40 1 2.6544 -0.0552 -2.2725 41 1 2.5160 0.8934 -4.8200 42 1 3.1329 -0.7638 -5.0614 43 1 2.9906 2.6549 -6.4451 44 1 3.2585 2.0509 -8.0979 45 1 1.8910 1.4382 -7.1372 46 1 5.5346 0.5829 -8.3677 47 1 6.8935 2.5613 -7.9854 48 1 7.8625 1.5805 -6.8597 49 1 9.4482 2.4868 -8.8411 50 1 12.2363 3.4338 -10.4125 51 1 6.0198 -0.5285 -5.2305 52 1 6.5494 1.0780 -4.6343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214478044.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:30 Heat of formation + Delta-G solvation = -150.463393 kcal Electronic energy + Delta-G solvation = -29642.359783 eV Core-core repulsion = 25447.447031 eV Total energy + Delta-G solvation = -4194.912752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26747 -40.19040 -39.46918 -38.88033 -36.21981 -35.55520 -34.68913 -33.46352 -33.20462 -31.49260 -29.96452 -28.02778 -27.49015 -27.33264 -26.11762 -25.01247 -23.04983 -21.98276 -21.43727 -20.96917 -20.22226 -19.85945 -18.24317 -17.90534 -17.65202 -17.27703 -16.77689 -16.67012 -16.37037 -16.06768 -15.93039 -15.77864 -15.67589 -15.20404 -14.98077 -14.60138 -14.43105 -14.17679 -14.12965 -13.87413 -13.72045 -13.52001 -13.47034 -13.34563 -13.25043 -12.96338 -12.88606 -12.74713 -12.43915 -12.42063 -12.21336 -12.13404 -12.07478 -12.02822 -11.90488 -11.58726 -11.52374 -11.50512 -10.93503 -10.50226 -10.36109 -10.02837 -9.78769 -9.39716 -8.46986 -5.96268 1.39774 1.41744 1.52855 1.60439 1.87629 2.03591 2.29020 2.89007 2.91639 3.20054 3.32299 3.48364 3.60236 3.75745 3.81264 3.95604 4.10668 4.20450 4.23728 4.29771 4.32436 4.35313 4.45730 4.49201 4.50517 4.55384 4.56463 4.60274 4.65834 4.72160 4.78852 4.80597 4.88140 4.90528 4.93831 4.99012 5.01730 5.05705 5.10020 5.22332 5.27307 5.34081 5.38017 5.40467 5.87680 6.07231 6.35788 6.35900 6.55465 6.58506 7.11268 7.11922 7.54683 8.09315 8.70107 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.001702 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.428630 B =16445.350481 C =17127.254510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.088 3.912 4 H 0.083 0.917 5 C -0.175 4.175 6 C -0.100 4.100 7 C -0.121 4.121 8 C 0.523 3.477 9 O -0.592 6.592 10 N -0.622 5.622 11 C 0.108 3.892 12 C -0.104 4.104 13 H 0.097 0.903 14 C -0.141 4.141 15 C 0.082 3.918 16 H 0.063 0.937 17 N -0.667 5.667 18 C 0.065 3.935 19 C 0.439 3.561 20 O -0.620 6.620 21 N -0.573 5.573 22 C -0.336 4.336 23 H 0.081 0.919 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.995 3.005 27 H -0.270 1.270 28 H -0.271 1.271 29 H -0.273 1.273 30 C 0.112 3.888 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.083 0.917 46 H 0.354 0.646 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.070 0.930 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.872 1.097 18.244 32.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.030 3.970 4 H 0.101 0.899 5 C -0.233 4.233 6 C -0.139 4.139 7 C -0.160 4.160 8 C 0.315 3.685 9 O -0.473 6.473 10 N -0.356 5.356 11 C -0.014 4.014 12 C -0.123 4.123 13 H 0.115 0.885 14 C -0.198 4.198 15 C -0.029 4.029 16 H 0.081 0.919 17 N -0.300 5.300 18 C -0.067 4.067 19 C 0.226 3.774 20 O -0.507 6.507 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.099 0.901 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.818 3.182 27 H -0.195 1.195 28 H -0.196 1.196 29 H -0.198 1.198 30 C -0.012 4.012 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.175 0.825 47 H 0.087 0.913 48 H 0.113 0.887 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.089 0.911 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.962 0.088 18.632 31.956 hybrid contribution 0.817 1.001 -0.840 1.541 sum -25.145 1.089 17.792 30.822 Atomic orbital electron populations 1.22949 0.79834 1.03525 1.00898 1.87921 1.21114 1.28503 1.95225 1.22182 0.94085 0.84787 0.95925 0.89901 1.22273 1.02570 1.01950 0.96471 1.21437 0.96380 1.02692 0.93342 1.21615 0.92891 1.06046 0.95440 1.21144 0.92466 0.74885 0.80042 1.90698 1.38609 1.51973 1.66042 1.48939 1.09669 1.69012 1.07936 1.22384 0.89040 1.02360 0.87606 1.22282 0.92604 1.00592 0.96819 0.88502 1.21862 1.00050 0.97160 1.00730 1.22638 0.92788 0.97410 0.90038 0.91874 1.59936 1.10034 1.50468 1.09598 1.21576 0.93471 0.95090 0.96611 1.20777 0.83303 0.85767 0.87512 1.90490 1.72207 1.28164 1.59817 1.41937 1.22599 1.26100 1.30369 1.19660 1.06234 1.10678 1.09967 0.90118 1.26064 0.97978 0.95871 1.01383 1.69668 1.26049 1.18070 1.42351 0.84967 0.77466 0.78060 0.77709 1.19464 1.19555 1.19821 1.22404 0.88257 1.01086 0.89473 0.92574 0.89153 0.93524 0.93015 0.90671 0.91513 0.92821 0.90280 0.86197 0.87213 0.87558 0.89881 0.92169 0.92945 0.89789 0.82538 0.91345 0.88742 0.77068 0.91298 0.91123 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.82 113.37 1.23 1.41 16 2 O -0.41 -5.85 9.88 -148.98 -1.47 -7.32 16 3 C 0.09 1.04 2.72 30.59 0.08 1.12 16 4 H 0.08 0.63 7.79 -2.39 -0.02 0.61 16 5 C -0.18 -1.96 9.53 71.98 0.69 -1.28 16 6 C -0.10 -1.63 4.21 30.59 0.13 -1.50 16 7 C -0.12 -1.73 4.68 29.85 0.14 -1.59 16 8 C 0.52 12.38 7.89 87.66 0.69 13.08 16 9 O -0.59 -19.80 16.21 -3.04 -0.05 -19.85 16 10 N -0.62 -13.24 3.30 -808.71 -2.67 -15.91 16 11 C 0.11 1.44 6.41 86.53 0.55 1.99 16 12 C -0.10 -1.62 3.08 -9.90 -0.03 -1.65 16 13 H 0.10 1.60 7.94 -2.39 -0.02 1.58 16 14 C -0.14 -1.67 8.90 71.98 0.64 -1.03 16 15 C 0.08 1.88 2.94 46.13 0.14 2.02 16 16 H 0.06 1.43 7.55 -2.39 -0.02 1.41 16 17 N -0.67 -20.18 5.98 -489.33 -2.93 -23.11 16 18 C 0.06 2.25 6.03 85.56 0.52 2.76 16 19 C 0.44 20.95 7.82 87.66 0.69 21.64 16 20 O -0.62 -34.11 15.78 -3.10 -0.05 -34.16 16 21 N -0.57 -29.75 5.29 -306.98 -1.62 -31.37 16 22 C -0.34 -19.23 9.68 84.04 0.81 -18.42 16 23 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.92 -50.26 13.05 21.66 0.28 -49.98 16 26 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 30 C 0.11 2.93 6.78 86.68 0.59 3.52 16 31 H 0.06 0.27 8.09 -2.38 -0.02 0.25 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.29 7.87 -2.39 -0.02 0.27 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.60 7.87 -2.39 -0.02 0.58 16 37 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 38 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.12 0.99 7.91 -2.39 -0.02 0.97 16 40 H 0.11 1.39 7.82 -2.39 -0.02 1.37 16 41 H 0.11 0.78 7.08 -2.39 -0.02 0.77 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.35 10.76 8.03 -89.69 -0.72 10.04 16 47 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 48 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 49 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 50 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 51 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 52 H 0.06 1.79 7.87 -2.39 -0.02 1.77 16 Total: -1.00 -75.74 424.08 0.30 -75.43 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: -0.54 Total: 39.20 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 7.33 Total: 21.83 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -6.94 Total: -120.37 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: -1.57 Total: -61.33 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -75.74 0.30 -75.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214478044.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.029 kcal (2) G-P(sol) polarization free energy of solvation -75.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds