Wall clock time and date at job start Wed Apr 1 2020 01:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00097 * 2 1 4 4 H 1.09006 * 109.46971 * 30.00137 * 3 2 1 5 5 C 1.53003 * 109.47019 * 270.00167 * 3 2 1 6 6 C 1.53000 * 109.47203 * 150.00158 * 3 2 1 7 7 C 1.53007 * 109.47149 * 294.99985 * 6 3 2 8 8 C 1.50697 * 109.47152 * 180.02562 * 7 6 3 9 9 O 1.21281 * 120.00215 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00011 * 180.02562 * 8 7 6 11 11 C 1.47433 * 125.64827 * 359.95572 * 10 8 7 12 12 C 1.55120 * 104.94159 * 204.04042 * 11 10 8 13 13 H 1.08998 * 110.93360 * 81.21869 * 12 11 10 14 14 C 1.53001 * 111.15978 * 205.12899 * 12 11 10 15 15 C 1.55149 * 101.48768 * 323.22436 * 12 11 10 16 16 H 1.09011 * 110.71896 * 276.82949 * 15 12 11 17 17 N 1.46898 * 110.72065 * 153.73876 * 15 12 11 18 18 C 1.46904 * 111.00201 * 157.43986 * 17 15 12 19 19 C 1.50697 * 109.46892 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00763 * 359.72740 * 19 18 17 21 21 N 1.34784 * 119.99774 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99968 * 179.72830 * 21 19 18 23 23 H 1.08005 * 120.00127 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00107 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00272 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99631 * 0.02562 * 24 22 21 27 27 H 1.48491 * 109.47423 * 89.99791 * 26 24 22 28 28 H 1.48505 * 109.46968 * 209.99733 * 26 24 22 29 29 H 1.48504 * 109.47133 * 329.99196 * 26 24 22 30 30 C 1.47022 * 125.65048 * 180.02562 * 10 8 7 31 31 H 1.09000 * 109.47261 * 59.99932 * 1 2 3 32 32 H 1.09001 * 109.47312 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46915 * 300.00026 * 1 2 3 34 34 H 1.09005 * 109.46874 * 180.02562 * 5 3 2 35 35 H 1.08996 * 109.46774 * 299.99653 * 5 3 2 36 36 H 1.08990 * 109.47254 * 60.00065 * 5 3 2 37 37 H 1.08994 * 109.47355 * 175.00286 * 6 3 2 38 38 H 1.09004 * 109.47278 * 55.00011 * 6 3 2 39 39 H 1.09001 * 109.47119 * 59.99801 * 7 6 3 40 40 H 1.09004 * 109.47052 * 300.00164 * 7 6 3 41 41 H 1.08997 * 110.36436 * 323.00723 * 11 10 8 42 42 H 1.08998 * 110.36529 * 85.21829 * 11 10 8 43 43 H 1.09000 * 109.47236 * 172.17145 * 14 12 11 44 44 H 1.08995 * 109.47446 * 292.17261 * 14 12 11 45 45 H 1.09004 * 109.47023 * 52.17607 * 14 12 11 46 46 H 1.00898 * 111.00447 * 33.48191 * 17 15 12 47 47 H 1.09001 * 109.46900 * 60.00109 * 18 17 15 48 48 H 1.08993 * 109.47169 * 299.99830 * 18 17 15 49 49 H 0.97005 * 119.99846 * 359.72750 * 21 19 18 50 50 H 0.97000 * 119.99725 * 180.02562 * 25 24 22 51 51 H 1.09000 * 109.88043 * 59.48774 * 30 10 8 52 52 H 1.08994 * 109.87953 * 298.32309 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2632 0.7212 7 6 3.1383 0.9184 2.1955 8 6 4.4667 0.8774 2.9060 9 8 5.4891 1.1024 2.2937 10 7 4.5185 0.5908 4.2219 11 6 3.3586 0.2994 5.0841 12 6 3.8295 0.6502 6.5199 13 1 3.7587 1.7225 6.7019 14 6 3.0384 -0.1351 7.5679 15 6 5.3105 0.1894 6.4806 16 1 5.3865 -0.8812 6.6718 17 7 6.1163 0.9465 7.4477 18 6 7.3321 0.2074 7.8131 19 6 8.1315 1.0139 8.8038 20 8 7.7307 2.0999 9.1659 21 7 9.2945 0.5305 9.2839 22 6 10.0245 1.2666 10.1810 23 1 9.6679 2.2340 10.5027 24 6 11.2233 0.7681 10.6763 25 7 11.9233 1.4739 11.5358 26 14 11.8404 -0.9047 10.1192 27 1 12.6928 -0.7418 8.9143 28 1 12.6361 -1.5266 11.2080 29 1 10.6828 -1.7758 9.7926 30 6 5.7409 0.5183 5.0356 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.6614 2.7670 -1.4425 35 1 2.8829 1.0775 -1.9563 36 1 1.2569 1.8015 -1.9563 37 1 3.8427 2.2369 0.6444 38 1 3.9931 0.5051 0.2617 39 1 2.6545 -0.0553 2.2724 40 1 2.5041 1.6765 2.6550 41 1 2.5093 0.9206 4.8000 42 1 3.0941 -0.7560 5.0202 43 1 3.4802 0.0245 8.5515 44 1 2.0038 0.2079 7.5744 45 1 3.0675 -1.1972 7.3245 46 1 5.5745 1.1787 8.2666 47 1 7.9322 0.0311 6.9203 48 1 7.0563 -0.7477 8.2599 49 1 9.6150 -0.3381 8.9946 50 1 12.7603 1.1260 11.8812 51 1 6.2592 1.4769 5.0121 52 1 6.3932 -0.2677 4.6552 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214478045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:34 Heat of formation + Delta-G solvation = -119.917770 kcal Electronic energy + Delta-G solvation = -29677.130017 eV Core-core repulsion = 25483.541822 eV Total energy + Delta-G solvation = -4193.588194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.41605 -39.00384 -38.51761 -37.89311 -34.83904 -34.08514 -33.86343 -32.62124 -31.65523 -30.86838 -29.03055 -27.17501 -26.73259 -26.57306 -24.74500 -23.80470 -21.99866 -21.43274 -20.50942 -19.48887 -19.27090 -18.29879 -17.43895 -17.18791 -16.88146 -15.91068 -15.71308 -15.61622 -15.39882 -15.28066 -14.92672 -14.71686 -14.33543 -14.16060 -13.72062 -13.59804 -13.50307 -13.35245 -13.07736 -12.98948 -12.85666 -12.75639 -12.47770 -12.43426 -12.19258 -12.04859 -11.92394 -11.74598 -11.73741 -11.47019 -11.34557 -11.27366 -11.13045 -10.99908 -10.74070 -10.59487 -10.10711 -9.97747 -9.91667 -9.57579 -8.79284 -8.62440 -8.26678 -8.17745 -6.31258 -3.82717 2.50985 2.75061 3.02403 3.07749 3.15548 3.34917 3.72604 3.99115 4.08059 4.10498 4.17908 4.37404 4.48323 4.60838 4.67785 4.80071 4.84259 4.87876 4.90265 4.92680 5.02521 5.07903 5.11315 5.14439 5.18340 5.20506 5.22628 5.29473 5.32538 5.47577 5.48080 5.52497 5.56236 5.65864 5.73626 5.74320 5.76135 5.82560 5.90234 5.92283 5.94196 6.02383 6.14104 6.78160 7.03248 7.33651 7.49326 7.57690 8.02941 8.13997 8.59188 8.94608 9.42048 9.81789 10.81781 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020932 B = 0.001798 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.349666 B =15570.109201 C =16209.578058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.084 3.916 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.102 4.102 7 C -0.133 4.133 8 C 0.527 3.473 9 O -0.539 6.539 10 N -0.618 5.618 11 C 0.107 3.893 12 C -0.108 4.108 13 H 0.098 0.902 14 C -0.144 4.144 15 C 0.079 3.921 16 H 0.062 0.938 17 N -0.656 5.656 18 C 0.046 3.954 19 C 0.450 3.550 20 O -0.564 6.564 21 N -0.590 5.590 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 C 0.113 3.887 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.356 0.644 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.371 0.629 50 H 0.273 0.727 51 H 0.085 0.915 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.691 -6.827 -20.433 33.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.140 4.140 7 C -0.173 4.173 8 C 0.316 3.684 9 O -0.416 6.416 10 N -0.353 5.353 11 C -0.017 4.017 12 C -0.127 4.127 13 H 0.116 0.884 14 C -0.202 4.202 15 C -0.032 4.032 16 H 0.079 0.921 17 N -0.290 5.290 18 C -0.086 4.086 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.229 5.229 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 C -0.010 4.010 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.177 0.823 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.103 0.897 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.777 -5.706 -20.930 32.932 hybrid contribution 0.107 -1.852 0.321 1.883 sum -24.670 -7.558 -20.609 33.022 Atomic orbital electron populations 1.22780 0.81306 1.02704 0.99868 1.87947 1.19417 1.27914 1.95083 1.22209 0.94832 0.84569 0.95773 0.92078 1.22267 1.02299 1.01998 0.96670 1.21482 0.95632 1.03957 0.92889 1.21614 0.95006 1.04425 0.96229 1.20390 0.91636 0.76237 0.80167 1.90725 1.36572 1.49225 1.65104 1.48451 1.08785 1.69919 1.08161 1.22415 0.89075 1.00798 0.89416 1.22590 0.94074 1.02121 0.93955 0.88363 1.21741 1.00056 0.99791 0.98573 1.22597 0.91905 0.96241 0.92494 0.92061 1.59984 1.07079 1.43722 1.18234 1.21793 0.92760 0.94933 0.99144 1.19665 0.83199 0.88149 0.85450 1.90568 1.70341 1.21898 1.61823 1.42205 1.20355 1.18900 1.41453 1.19432 1.01849 1.03614 1.18526 0.86267 1.25040 0.96231 0.98211 0.96640 1.69622 1.14845 1.37688 1.29904 0.86672 0.79513 0.83816 0.79376 1.19552 1.20187 1.19549 1.22017 0.86782 1.03131 0.89046 0.94190 0.89708 0.94047 0.91355 0.91558 0.92534 0.89690 0.90124 0.88376 0.89281 0.90440 0.91110 0.91724 0.91909 0.92317 0.82290 0.89378 0.93537 0.79681 0.91605 0.89669 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.38 -3.02 9.88 -35.23 -0.35 -3.37 16 3 C 0.08 0.57 2.72 -26.73 -0.07 0.50 16 4 H 0.06 0.33 7.79 -51.93 -0.40 -0.07 16 5 C -0.17 -1.07 9.53 37.16 0.35 -0.72 16 6 C -0.10 -0.86 4.21 -26.73 -0.11 -0.97 16 7 C -0.13 -1.08 4.60 -27.88 -0.13 -1.21 16 8 C 0.53 6.35 7.85 -10.99 -0.09 6.27 16 9 O -0.54 -8.74 16.31 5.56 0.09 -8.65 16 10 N -0.62 -6.80 3.33 -170.39 -0.57 -7.36 16 11 C 0.11 0.80 6.17 -2.41 -0.01 0.79 16 12 C -0.11 -0.92 3.06 -88.36 -0.27 -1.19 16 13 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.14 -0.98 9.32 37.16 0.35 -0.63 16 15 C 0.08 0.87 2.72 -65.88 -0.18 0.69 16 16 H 0.06 0.62 7.75 -51.92 -0.40 0.22 16 17 N -0.66 -9.60 5.93 -106.06 -0.63 -10.23 16 18 C 0.05 0.75 6.03 -4.98 -0.03 0.72 16 19 C 0.45 10.10 7.82 -10.98 -0.09 10.01 16 20 O -0.56 -15.01 15.78 5.55 0.09 -14.93 16 21 N -0.59 -14.02 5.09 -10.96 -0.06 -14.08 16 22 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 23 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 24 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 25 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 26 Si 0.88 19.44 27.74 -169.99 -4.71 14.72 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 29 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 30 C 0.11 1.43 6.61 -3.07 -0.02 1.41 16 31 H 0.04 0.17 7.87 -51.93 -0.41 -0.24 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.04 0.16 8.09 -51.93 -0.42 -0.26 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 37 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.10 0.72 7.82 -51.93 -0.41 0.31 16 40 H 0.09 0.55 7.85 -51.93 -0.41 0.14 16 41 H 0.08 0.44 7.48 -51.93 -0.39 0.06 16 42 H 0.07 0.45 7.99 -51.93 -0.41 0.04 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 46 H 0.36 5.27 8.17 -39.29 -0.32 4.95 16 47 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 48 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 49 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 50 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 51 H 0.09 1.30 8.03 -51.93 -0.42 0.89 16 52 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 421.51 15.07 6.35 6.35 Total: -1.00 -35.38 421.51 -7.72 -43.09 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -9.25 Total: 10.30 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 0.55 Total: 9.15 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.48 Total: -56.68 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.17 Total: -26.95 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.38 -7.72 -43.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214478045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.826 kcal (2) G-P(sol) polarization free energy of solvation -35.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds