Wall clock time and date at job start Wed Apr 1 2020 01:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00097 * 2 1 4 4 H 1.09006 * 109.46971 * 30.00137 * 3 2 1 5 5 C 1.53003 * 109.47019 * 270.00167 * 3 2 1 6 6 C 1.53000 * 109.47203 * 150.00158 * 3 2 1 7 7 C 1.53007 * 109.47149 * 294.99985 * 6 3 2 8 8 C 1.50697 * 109.47152 * 180.02562 * 7 6 3 9 9 O 1.21281 * 120.00215 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00011 * 180.02562 * 8 7 6 11 11 C 1.47433 * 125.64827 * 359.95572 * 10 8 7 12 12 C 1.55120 * 104.94159 * 204.04042 * 11 10 8 13 13 H 1.08998 * 110.93360 * 81.21869 * 12 11 10 14 14 C 1.53001 * 111.15978 * 205.12899 * 12 11 10 15 15 C 1.55149 * 101.48768 * 323.22436 * 12 11 10 16 16 H 1.09011 * 110.71896 * 276.82949 * 15 12 11 17 17 N 1.46898 * 110.72065 * 153.73876 * 15 12 11 18 18 C 1.46904 * 111.00201 * 157.43986 * 17 15 12 19 19 C 1.50697 * 109.46892 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00763 * 359.72740 * 19 18 17 21 21 N 1.34784 * 119.99774 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99968 * 179.72830 * 21 19 18 23 23 H 1.08005 * 120.00127 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00107 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00272 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99631 * 0.02562 * 24 22 21 27 27 H 1.48491 * 109.47423 * 89.99791 * 26 24 22 28 28 H 1.48505 * 109.46968 * 209.99733 * 26 24 22 29 29 H 1.48504 * 109.47133 * 329.99196 * 26 24 22 30 30 C 1.47022 * 125.65048 * 180.02562 * 10 8 7 31 31 H 1.09000 * 109.47261 * 59.99932 * 1 2 3 32 32 H 1.09001 * 109.47312 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46915 * 300.00026 * 1 2 3 34 34 H 1.09005 * 109.46874 * 180.02562 * 5 3 2 35 35 H 1.08996 * 109.46774 * 299.99653 * 5 3 2 36 36 H 1.08990 * 109.47254 * 60.00065 * 5 3 2 37 37 H 1.08994 * 109.47355 * 175.00286 * 6 3 2 38 38 H 1.09004 * 109.47278 * 55.00011 * 6 3 2 39 39 H 1.09001 * 109.47119 * 59.99801 * 7 6 3 40 40 H 1.09004 * 109.47052 * 300.00164 * 7 6 3 41 41 H 1.08997 * 110.36436 * 323.00723 * 11 10 8 42 42 H 1.08998 * 110.36529 * 85.21829 * 11 10 8 43 43 H 1.09000 * 109.47236 * 172.17145 * 14 12 11 44 44 H 1.08995 * 109.47446 * 292.17261 * 14 12 11 45 45 H 1.09004 * 109.47023 * 52.17607 * 14 12 11 46 46 H 1.00898 * 111.00447 * 33.48191 * 17 15 12 47 47 H 1.09001 * 109.46900 * 60.00109 * 18 17 15 48 48 H 1.08993 * 109.47169 * 299.99830 * 18 17 15 49 49 H 0.97005 * 119.99846 * 359.72750 * 21 19 18 50 50 H 0.97000 * 119.99725 * 180.02562 * 25 24 22 51 51 H 1.09000 * 109.88043 * 59.48774 * 30 10 8 52 52 H 1.08994 * 109.87953 * 298.32309 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2632 0.7212 7 6 3.1383 0.9184 2.1955 8 6 4.4667 0.8774 2.9060 9 8 5.4891 1.1024 2.2937 10 7 4.5185 0.5908 4.2219 11 6 3.3586 0.2994 5.0841 12 6 3.8295 0.6502 6.5199 13 1 3.7587 1.7225 6.7019 14 6 3.0384 -0.1351 7.5679 15 6 5.3105 0.1894 6.4806 16 1 5.3865 -0.8812 6.6718 17 7 6.1163 0.9465 7.4477 18 6 7.3321 0.2074 7.8131 19 6 8.1315 1.0139 8.8038 20 8 7.7307 2.0999 9.1659 21 7 9.2945 0.5305 9.2839 22 6 10.0245 1.2666 10.1810 23 1 9.6679 2.2340 10.5027 24 6 11.2233 0.7681 10.6763 25 7 11.9233 1.4739 11.5358 26 14 11.8404 -0.9047 10.1192 27 1 12.6928 -0.7418 8.9143 28 1 12.6361 -1.5266 11.2080 29 1 10.6828 -1.7758 9.7926 30 6 5.7409 0.5183 5.0356 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.6614 2.7670 -1.4425 35 1 2.8829 1.0775 -1.9563 36 1 1.2569 1.8015 -1.9563 37 1 3.8427 2.2369 0.6444 38 1 3.9931 0.5051 0.2617 39 1 2.6545 -0.0553 2.2724 40 1 2.5041 1.6765 2.6550 41 1 2.5093 0.9206 4.8000 42 1 3.0941 -0.7560 5.0202 43 1 3.4802 0.0245 8.5515 44 1 2.0038 0.2079 7.5744 45 1 3.0675 -1.1972 7.3245 46 1 5.5745 1.1787 8.2666 47 1 7.9322 0.0311 6.9203 48 1 7.0563 -0.7477 8.2599 49 1 9.6150 -0.3381 8.9946 50 1 12.7603 1.1260 11.8812 51 1 6.2592 1.4769 5.0121 52 1 6.3932 -0.2677 4.6552 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214478045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:33 Heat of formation + Delta-G solvation = -147.861328 kcal Electronic energy + Delta-G solvation = -29678.341740 eV Core-core repulsion = 25483.541822 eV Total energy + Delta-G solvation = -4194.799918 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.29815 -40.32474 -39.48012 -38.88543 -36.25205 -35.61110 -34.69346 -33.77779 -33.40913 -31.51501 -30.02718 -28.13991 -27.48557 -27.31352 -25.96734 -25.01468 -22.85806 -22.00726 -21.44269 -21.16718 -20.37316 -20.06214 -18.30261 -17.80020 -17.77889 -17.45241 -16.91631 -16.53480 -16.45507 -16.12810 -15.90185 -15.79060 -15.57021 -15.01990 -14.96830 -14.70764 -14.55913 -14.37026 -14.08824 -13.96003 -13.84237 -13.66204 -13.42243 -13.35399 -13.32624 -13.05806 -12.95691 -12.73489 -12.45103 -12.42114 -12.23200 -12.11822 -12.05198 -11.99713 -11.95077 -11.53491 -11.52932 -11.48594 -10.94101 -10.50642 -10.45236 -10.26010 -9.69164 -9.42989 -8.42351 -6.03261 1.29048 1.35161 1.43435 1.61147 1.91361 1.93705 2.22001 2.70480 2.90442 3.13963 3.28391 3.41037 3.48702 3.74968 3.81097 4.03785 4.11769 4.12371 4.19421 4.20983 4.32407 4.35906 4.41422 4.50503 4.52851 4.54879 4.56800 4.57691 4.65862 4.73059 4.74817 4.80362 4.88637 4.92979 4.93839 4.98874 5.02344 5.05658 5.18574 5.25635 5.27853 5.33613 5.42790 5.51847 5.89144 6.02211 6.34274 6.35079 6.51787 6.58334 6.86701 7.13321 7.38236 7.94465 8.75194 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020932 B = 0.001798 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.349666 B =15570.109201 C =16209.578058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.088 3.912 4 H 0.082 0.918 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.120 4.120 8 C 0.518 3.482 9 O -0.593 6.593 10 N -0.618 5.618 11 C 0.106 3.894 12 C -0.101 4.101 13 H 0.083 0.917 14 C -0.138 4.138 15 C 0.084 3.916 16 H 0.084 0.916 17 N -0.676 5.676 18 C 0.061 3.939 19 C 0.449 3.551 20 O -0.613 6.613 21 N -0.591 5.591 22 C -0.330 4.330 23 H 0.056 0.944 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.964 3.036 27 H -0.260 1.260 28 H -0.274 1.274 29 H -0.230 1.230 30 C 0.113 3.887 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.354 0.646 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.048 0.952 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.457 -10.085 -21.721 37.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.031 3.969 4 H 0.099 0.901 5 C -0.233 4.233 6 C -0.139 4.139 7 C -0.160 4.160 8 C 0.309 3.691 9 O -0.474 6.474 10 N -0.352 5.352 11 C -0.016 4.016 12 C -0.121 4.121 13 H 0.102 0.898 14 C -0.196 4.196 15 C -0.026 4.026 16 H 0.101 0.899 17 N -0.310 5.310 18 C -0.071 4.071 19 C 0.237 3.763 20 O -0.498 6.498 21 N -0.232 5.232 22 C -0.459 4.459 23 H 0.074 0.926 24 C -0.213 4.213 25 N -0.574 5.574 26 Si 0.784 3.216 27 H -0.185 1.185 28 H -0.199 1.199 29 H -0.153 1.153 30 C -0.012 4.012 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.175 0.825 47 H 0.123 0.877 48 H 0.102 0.898 49 H 0.225 0.775 50 H 0.089 0.911 51 H 0.067 0.933 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.605 -8.986 -22.216 36.556 hybrid contribution 0.904 -0.693 0.736 1.356 sum -26.702 -9.678 -21.481 35.610 Atomic orbital electron populations 1.22953 0.79832 1.03575 1.00861 1.87916 1.21098 1.28370 1.95222 1.22169 0.94069 0.84822 0.95888 0.90053 1.22272 1.02587 1.01913 0.96505 1.21431 0.96377 1.02615 0.93449 1.21616 0.92891 1.06101 0.95376 1.21187 0.92457 0.75140 0.80354 1.90697 1.38652 1.51683 1.66359 1.48571 1.09369 1.69083 1.08153 1.22684 0.88345 1.02823 0.87702 1.22560 0.92479 1.01600 0.95424 0.89830 1.21713 1.00506 1.00301 0.97079 1.22631 0.92902 0.96923 0.90136 0.89863 1.59895 1.07345 1.45091 1.18714 1.21694 0.92646 0.94949 0.97795 1.20944 0.82628 0.87822 0.84949 1.90545 1.71386 1.24440 1.63383 1.42034 1.20650 1.19411 1.41130 1.19013 1.03519 1.02516 1.20845 0.92633 1.26108 0.95569 1.03619 0.95993 1.69803 1.15588 1.40546 1.31447 0.85378 0.79981 0.77266 0.78983 1.18497 1.19861 1.15282 1.21897 0.87645 1.00962 0.90650 0.93606 0.89003 0.92624 0.90824 0.92907 0.91495 0.90599 0.92623 0.86825 0.86522 0.87814 0.88714 0.92908 0.90184 0.90939 0.82521 0.87664 0.89761 0.77496 0.91133 0.93313 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.41 -5.55 9.88 -148.98 -1.47 -7.02 16 3 C 0.09 1.04 2.72 30.60 0.08 1.12 16 4 H 0.08 0.63 7.79 -2.38 -0.02 0.62 16 5 C -0.18 -1.97 9.53 71.98 0.69 -1.28 16 6 C -0.10 -1.63 4.21 30.60 0.13 -1.50 16 7 C -0.12 -1.69 4.60 29.85 0.14 -1.55 16 8 C 0.52 12.10 7.85 87.66 0.69 12.79 16 9 O -0.59 -19.86 16.31 -3.03 -0.05 -19.91 16 10 N -0.62 -12.59 3.33 -811.38 -2.70 -15.29 16 11 C 0.11 1.21 6.17 86.93 0.54 1.75 16 12 C -0.10 -1.45 3.06 -9.33 -0.03 -1.48 16 13 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 14 C -0.14 -1.38 9.32 71.98 0.67 -0.71 16 15 C 0.08 1.68 2.72 46.10 0.13 1.80 16 16 H 0.08 1.36 7.75 -2.38 -0.02 1.34 16 17 N -0.68 -19.09 5.93 -489.46 -2.90 -21.99 16 18 C 0.06 1.85 6.03 85.56 0.52 2.37 16 19 C 0.45 20.26 7.82 87.65 0.69 20.94 16 20 O -0.61 -34.01 15.78 -3.06 -0.05 -34.06 16 21 N -0.59 -28.02 5.09 -306.97 -1.56 -29.58 16 22 C -0.33 -19.48 10.16 84.04 0.85 -18.63 16 23 H 0.06 3.91 7.39 -2.91 -0.02 3.88 16 24 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 25 N -0.93 -56.65 13.96 21.66 0.30 -56.34 16 26 Si 0.96 39.13 27.74 68.60 1.90 41.03 16 27 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 28 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 29 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 30 C 0.11 2.77 6.61 86.73 0.57 3.34 16 31 H 0.05 0.27 7.87 -2.39 -0.02 0.25 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.24 8.09 -2.39 -0.02 0.22 16 34 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.60 7.87 -2.39 -0.02 0.58 16 37 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 38 H 0.05 1.16 8.10 -2.38 -0.02 1.15 16 39 H 0.11 1.29 7.82 -2.39 -0.02 1.28 16 40 H 0.12 1.01 7.85 -2.38 -0.02 1.00 16 41 H 0.10 0.70 7.48 -2.39 -0.02 0.68 16 42 H 0.09 0.72 7.99 -2.39 -0.02 0.70 16 43 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 45 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 46 H 0.35 10.26 8.17 -89.70 -0.73 9.52 16 47 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 48 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 49 H 0.39 15.31 5.76 -92.70 -0.53 14.77 16 50 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 51 H 0.05 1.55 8.03 -2.39 -0.02 1.53 16 52 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -85.48 421.51 0.40 -85.08 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -0.42 Total: 38.04 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 7.35 Total: 20.04 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -6.86 Total: -123.20 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -1.57 Total: -60.99 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.90 Total: 41.03 kcal Total: -85.48 0.40 -85.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214478045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.783 kcal (2) G-P(sol) polarization free energy of solvation -85.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds