Wall clock time and date at job start Wed Apr 1 2020 01:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99903 * 2 1 4 4 C 1.53001 * 109.47388 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47446 * 59.99220 * 4 3 2 6 6 C 1.53004 * 109.46638 * 299.99713 * 4 3 2 7 7 C 1.50698 * 109.47355 * 179.97438 * 4 3 2 8 8 O 1.21278 * 120.00164 * 354.21720 * 7 4 3 9 9 N 1.34781 * 119.99991 * 174.22643 * 7 4 3 10 10 C 1.47017 * 125.64833 * 354.39726 * 9 7 4 11 11 C 1.54324 * 107.27230 * 178.97633 * 10 9 7 12 12 H 1.09004 * 110.71563 * 96.34520 * 11 10 9 13 13 C 1.52998 * 110.72198 * 219.44714 * 11 10 9 14 14 C 1.55153 * 102.94142 * 337.81543 * 11 10 9 15 15 H 1.09013 * 111.00157 * 277.42287 * 14 11 10 16 16 N 1.46904 * 111.00623 * 153.57469 * 14 11 10 17 17 C 1.46899 * 111.00081 * 154.99272 * 16 14 11 18 18 C 1.50698 * 109.47065 * 179.97438 * 17 16 14 19 19 O 1.21289 * 120.00009 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99984 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00216 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99396 * 359.97438 * 21 20 18 23 23 C 1.38942 * 120.00408 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00140 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00315 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46953 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47215 * 119.99710 * 25 23 21 28 28 H 1.48492 * 109.47282 * 239.99741 * 25 23 21 29 29 C 1.47422 * 125.64509 * 174.44432 * 9 7 4 30 30 H 1.08996 * 109.47026 * 60.00206 * 1 2 3 31 31 H 1.09002 * 109.46991 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47389 * 300.00044 * 1 2 3 33 33 H 1.08997 * 109.47533 * 59.99739 * 3 2 1 34 34 H 1.09003 * 109.46819 * 299.99554 * 3 2 1 35 35 H 1.08998 * 109.47331 * 183.62592 * 5 4 3 36 36 H 1.09005 * 109.47375 * 303.62949 * 5 4 3 37 37 H 1.09006 * 109.46994 * 63.62210 * 5 4 3 38 38 H 1.09006 * 109.47263 * 284.71546 * 6 4 3 39 39 H 1.08991 * 109.47417 * 44.72122 * 6 4 3 40 40 H 1.09001 * 109.46880 * 164.72117 * 6 4 3 41 41 H 1.09004 * 109.88201 * 59.56299 * 10 9 7 42 42 H 1.08997 * 110.01551 * 298.47080 * 10 9 7 43 43 H 1.08997 * 109.47106 * 58.54826 * 13 11 10 44 44 H 1.09003 * 109.46896 * 178.55045 * 13 11 10 45 45 H 1.09005 * 109.46864 * 298.54521 * 13 11 10 46 46 H 1.00896 * 111.00082 * 31.04112 * 16 14 11 47 47 H 1.08995 * 109.47354 * 300.00410 * 17 16 14 48 48 H 1.09003 * 109.46832 * 60.00187 * 17 16 14 49 49 H 0.97000 * 120.00374 * 0.02562 * 20 18 17 50 50 H 0.97000 * 120.00701 * 180.02562 * 24 23 21 51 51 H 1.09002 * 110.36858 * 322.92845 * 29 9 7 52 52 H 1.08997 * 110.36697 * 85.14493 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9865 0.4256 -1.2500 6 6 3.9873 0.4253 1.2484 7 6 4.1483 2.5615 -0.0013 8 8 3.4403 3.5404 -0.1070 9 7 5.4834 2.7048 0.1155 10 6 6.4430 1.6195 0.3659 11 6 7.8510 2.2506 0.3951 12 1 8.1592 2.4586 1.4198 13 6 8.8665 1.3410 -0.2995 14 6 7.6582 3.5676 -0.4020 15 1 7.7170 3.3868 -1.4755 16 7 8.6359 4.5824 0.0131 17 6 8.8725 5.5560 -1.0612 18 6 9.8780 6.5791 -0.5994 19 8 10.3512 6.5044 0.5149 20 7 10.2513 7.5773 -1.4245 21 6 11.1664 8.5078 -1.0045 22 1 11.5878 8.4411 -0.0123 23 6 11.5509 9.5371 -1.8549 24 7 11.0378 9.6185 -3.0620 25 14 12.7972 10.8054 -1.2825 26 1 13.2190 10.4929 0.1067 27 1 13.9812 10.7753 -2.1784 28 1 12.1819 12.1563 -1.3205 29 6 6.2231 3.9760 0.0143 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 5.0666 0.2833 -1.2186 36 1 3.4928 -0.5457 -1.2831 37 1 3.7211 0.9983 -2.1388 38 1 3.9140 1.0791 2.1175 39 1 3.3493 -0.4462 1.3944 40 1 5.0208 0.1022 1.1230 41 1 6.3844 0.8810 -0.4337 42 1 6.2290 1.1460 1.3240 43 1 8.5557 1.1701 -1.3302 44 1 9.8470 1.8171 -0.2898 45 1 8.9201 0.3879 0.2268 46 1 9.4997 4.1528 0.3084 47 1 9.2566 5.0400 -1.9411 48 1 7.9363 6.0547 -1.3122 49 1 9.8726 7.6374 -2.3155 50 1 11.3065 10.3368 -3.6559 51 1 5.7751 4.6161 -0.7458 52 1 6.2363 4.4849 0.9781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215148407.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:07 Heat of formation + Delta-G solvation = -137.603505 kcal Electronic energy + Delta-G solvation = -30542.847293 eV Core-core repulsion = 26348.492188 eV Total energy + Delta-G solvation = -4194.355105 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.79901 -40.26148 -39.48523 -38.64373 -36.41384 -35.97524 -35.32412 -33.47917 -33.21103 -30.27797 -28.44513 -28.37346 -27.89279 -27.43423 -26.49213 -25.96743 -23.90986 -22.03247 -21.52255 -20.96042 -20.12353 -19.88666 -18.09827 -17.82452 -17.53523 -17.05873 -16.90718 -16.81524 -16.44271 -16.35818 -15.99338 -15.73210 -15.48703 -15.26666 -15.01322 -14.65293 -14.57581 -14.31308 -14.20821 -13.87264 -13.72969 -13.57191 -13.48208 -13.38912 -13.12541 -12.97668 -12.94788 -12.74825 -12.69130 -12.41480 -12.38549 -12.12959 -12.10102 -12.07896 -11.92170 -11.59708 -11.52091 -11.38938 -10.81270 -10.68009 -10.35929 -10.02532 -9.74151 -9.41495 -8.47558 -5.96419 1.36188 1.41627 1.47194 1.55841 1.71873 2.03791 2.28498 2.75642 2.92833 3.19794 3.26114 3.39867 3.53965 3.60430 3.75546 3.85151 3.98079 4.13791 4.18461 4.25705 4.29229 4.38249 4.45351 4.45666 4.50144 4.55770 4.56340 4.59000 4.59700 4.68249 4.76233 4.78326 4.84385 4.86123 4.91296 4.94042 4.98770 5.04452 5.13591 5.23528 5.30813 5.35472 5.40206 5.41347 5.87462 6.07419 6.10755 6.34224 6.44861 6.58593 6.99371 7.11631 7.55033 8.09772 8.70051 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.001918 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.795249 B =14598.294663 C =15263.243394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.089 3.911 4 C -0.071 4.071 5 C -0.135 4.135 6 C -0.146 4.146 7 C 0.535 3.465 8 O -0.589 6.589 9 N -0.608 5.608 10 C 0.094 3.906 11 C -0.101 4.101 12 H 0.093 0.907 13 C -0.142 4.142 14 C 0.083 3.917 15 H 0.075 0.925 16 N -0.668 5.668 17 C 0.065 3.935 18 C 0.439 3.561 19 O -0.621 6.621 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.273 1.273 29 C 0.115 3.885 30 H 0.044 0.956 31 H 0.106 0.894 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.084 0.916 46 H 0.355 0.645 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.057 0.943 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.240 -25.872 2.268 30.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C 0.012 3.988 4 C -0.074 4.074 5 C -0.192 4.192 6 C -0.202 4.202 7 C 0.324 3.676 8 O -0.469 6.469 9 N -0.341 5.341 10 C -0.027 4.027 11 C -0.120 4.120 12 H 0.111 0.889 13 C -0.199 4.199 14 C -0.028 4.028 15 H 0.092 0.908 16 N -0.301 5.301 17 C -0.067 4.067 18 C 0.227 3.773 19 O -0.507 6.507 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.009 4.009 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.103 0.897 46 H 0.176 0.824 47 H 0.090 0.910 48 H 0.113 0.887 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.076 0.924 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.684 -25.063 3.111 29.730 hybrid contribution 0.501 1.285 -0.881 1.636 sum -15.183 -23.779 2.230 28.301 Atomic orbital electron populations 1.22936 0.79480 1.04113 1.00529 1.87755 1.21172 1.26870 1.95507 1.22059 0.91772 0.84527 1.00444 1.20633 0.94338 0.91388 1.01015 1.21878 1.02868 1.00786 0.93698 1.22102 1.03876 1.00457 0.93805 1.20650 0.80637 0.91371 0.74916 1.90696 1.61200 1.42711 1.52303 1.48326 1.05459 1.09992 1.70306 1.22826 0.86459 0.89689 1.03762 1.22436 0.95159 0.93448 1.00947 0.88895 1.21795 0.97588 0.99658 1.00859 1.22725 0.90555 0.90848 0.98636 0.90768 1.59833 1.16187 1.16965 1.37162 1.21588 0.98138 0.93436 0.93570 1.20806 0.86027 0.84668 0.85845 1.90492 1.60297 1.77503 1.22431 1.41946 1.38974 1.24293 1.15873 1.19716 1.19738 1.05895 1.00916 0.90199 1.26053 1.00172 0.99929 0.95201 1.69678 1.44577 1.34334 1.07597 0.84859 0.77675 0.77463 0.78265 1.19710 1.19464 1.19819 1.22145 0.91364 0.86189 1.01202 0.93745 0.87525 0.93702 0.93736 0.93667 0.89897 0.89373 0.93348 0.93199 0.89735 0.88820 0.88170 0.88332 0.91536 0.92742 0.89733 0.82417 0.90992 0.88665 0.77031 0.91316 0.92439 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.39 -6.48 9.07 -148.98 -1.35 -7.83 16 3 C 0.09 1.72 4.11 71.98 0.30 2.02 16 4 C -0.07 -1.22 0.58 -52.93 -0.03 -1.25 16 5 C -0.14 -1.79 8.19 71.98 0.59 -1.20 16 6 C -0.15 -1.84 7.59 71.98 0.55 -1.30 16 7 C 0.53 13.11 6.52 87.66 0.57 13.68 16 8 O -0.59 -19.88 16.28 -3.02 -0.05 -19.93 16 9 N -0.61 -12.93 3.32 -811.81 -2.70 -15.63 16 10 C 0.09 1.23 4.60 86.73 0.40 1.63 16 11 C -0.10 -1.53 2.95 -9.61 -0.03 -1.56 16 12 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 13 C -0.14 -1.59 9.13 71.98 0.66 -0.93 16 14 C 0.08 1.82 2.83 46.31 0.13 1.95 16 15 H 0.07 1.51 7.73 -2.38 -0.02 1.49 16 16 N -0.67 -19.79 6.04 -488.40 -2.95 -22.74 16 17 C 0.07 2.19 6.03 85.56 0.52 2.71 16 18 C 0.44 20.73 7.82 87.66 0.69 21.41 16 19 O -0.62 -34.01 15.78 -3.06 -0.05 -34.06 16 20 N -0.57 -29.51 5.29 -306.99 -1.62 -31.13 16 21 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 24 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16 25 Si 0.99 43.14 29.55 68.60 2.03 45.16 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 29 C 0.11 2.97 6.58 86.86 0.57 3.54 16 30 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.98 8.04 -2.39 -0.02 0.96 16 35 H 0.08 0.79 5.25 -2.39 -0.01 0.78 16 36 H 0.09 1.04 7.58 -2.38 -0.02 1.02 16 37 H 0.05 0.75 8.14 -2.38 -0.02 0.74 16 38 H 0.05 0.73 8.04 -2.38 -0.02 0.71 16 39 H 0.08 1.01 7.29 -2.39 -0.02 0.99 16 40 H 0.09 0.76 4.96 -2.39 -0.01 0.75 16 41 H 0.10 0.87 5.23 -2.39 -0.01 0.86 16 42 H 0.10 0.98 5.86 -2.39 -0.01 0.97 16 43 H 0.07 0.66 8.13 -2.39 -0.02 0.64 16 44 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.35 10.60 8.14 -89.70 -0.73 9.87 16 47 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 48 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 49 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 50 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 51 H 0.06 1.68 8.09 -2.39 -0.02 1.66 16 52 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -74.31 410.02 0.50 -73.81 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: -0.53 Total: 38.29 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 7.43 Total: 23.78 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -6.99 Total: -119.23 kcal Atomic # 8 Polarization: -60.37 SS G_CDS: -1.45 Total: -61.82 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -74.31 0.50 -73.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215148407.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.795 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds