Wall clock time and date at job start Wed Apr 1 2020 01:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 113.99851 * 2 1 4 4 H 1.09000 * 109.47409 * 340.92753 * 3 2 1 5 5 C 1.50700 * 109.47528 * 220.92993 * 3 2 1 6 6 O 1.21283 * 119.99417 * 351.62713 * 5 3 2 7 7 N 1.34773 * 120.00547 * 171.62966 * 5 3 2 8 8 C 1.48122 * 127.03108 * 4.68062 * 7 5 3 9 9 C 1.54591 * 103.42181 * 219.28527 * 8 7 5 10 10 H 1.08998 * 110.57448 * 81.17136 * 9 8 7 11 11 C 1.53002 * 110.99147 * 204.37494 * 9 8 7 12 12 C 1.54618 * 102.91365 * 322.87005 * 9 8 7 13 13 H 1.09001 * 110.41236 * 262.75777 * 12 9 8 14 14 N 1.46904 * 110.32861 * 140.59045 * 12 9 8 15 15 C 1.46900 * 111.00072 * 157.92459 * 14 12 9 16 16 C 1.50706 * 109.46786 * 180.02562 * 15 14 12 17 17 O 1.21290 * 120.00013 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99279 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99628 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00123 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00228 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99835 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00209 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46957 * 60.00042 * 23 21 19 25 25 H 1.48498 * 109.47058 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46854 * 300.00157 * 23 21 19 27 27 C 1.47487 * 127.03450 * 184.99700 * 7 5 3 28 28 C 1.53003 * 109.47114 * 100.92840 * 3 2 1 29 29 C 1.53000 * 109.47189 * 54.48826 * 28 3 2 30 30 C 1.53002 * 109.47040 * 294.48602 * 28 3 2 31 31 H 1.09000 * 109.47073 * 65.40590 * 1 2 3 32 32 H 1.09006 * 109.47012 * 185.40385 * 1 2 3 33 33 H 1.09004 * 109.47375 * 305.40242 * 1 2 3 34 34 H 1.08993 * 110.66220 * 337.76880 * 8 7 5 35 35 H 1.09000 * 110.65937 * 100.88771 * 8 7 5 36 36 H 1.08998 * 109.46993 * 173.65320 * 11 9 8 37 37 H 1.09001 * 109.47084 * 293.65582 * 11 9 8 38 38 H 1.08996 * 109.46786 * 53.65039 * 11 9 8 39 39 H 1.00898 * 110.99923 * 281.88110 * 14 12 9 40 40 H 1.08992 * 109.47029 * 299.99772 * 15 14 12 41 41 H 1.09000 * 109.47108 * 60.00328 * 15 14 12 42 42 H 0.96997 * 120.00603 * 0.02562 * 18 16 15 43 43 H 0.97003 * 120.00329 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.91298 * 273.87642 * 27 7 5 45 45 H 1.09003 * 109.91391 * 34.96399 * 27 7 5 46 46 H 1.09004 * 109.47072 * 174.48914 * 28 3 2 47 47 H 1.09004 * 109.46956 * 64.92989 * 29 28 3 48 48 H 1.08997 * 109.46997 * 184.92703 * 29 28 3 49 49 H 1.09002 * 109.46793 * 304.93405 * 29 28 3 50 50 H 1.09005 * 109.46774 * 66.80012 * 30 28 3 51 51 H 1.09006 * 109.46760 * 186.79685 * 30 28 3 52 52 H 1.08998 * 109.47209 * 306.79841 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2707 2.0324 -0.3358 5 6 3.1952 1.3278 -0.9308 6 8 3.6041 0.2946 -1.4167 7 7 3.8005 2.4959 -1.2232 8 6 3.4960 3.8268 -0.6487 9 6 3.6241 4.7785 -1.8602 10 1 2.7145 4.7589 -2.4605 11 6 3.9403 6.2048 -1.4057 12 6 4.8122 4.1784 -2.6469 13 1 5.7345 4.7060 -2.4036 14 7 4.5534 4.2448 -4.0914 15 6 5.8075 4.1859 -4.8542 16 6 5.5026 4.2570 -6.3284 17 8 4.3536 4.3473 -6.7063 18 7 6.5066 4.2192 -7.2266 19 6 6.2292 4.2833 -8.5678 20 1 5.2062 4.3645 -8.9044 21 6 7.2643 4.2449 -9.4940 22 7 8.5091 4.1466 -9.0844 23 14 6.8864 4.3330 -11.3212 24 1 6.1843 5.6068 -11.6206 25 1 8.1541 4.2729 -12.0923 26 1 6.0204 3.1887 -11.7033 27 6 4.8972 2.7116 -2.1855 28 6 2.4675 1.6601 1.4164 29 6 3.4002 0.5662 1.9401 30 6 1.2476 1.7722 2.3330 31 1 -0.3633 0.4277 -0.9344 32 1 -0.3633 -1.0232 0.0968 33 1 -0.3634 0.5954 0.8377 34 1 2.4827 3.8500 -0.2479 35 1 4.2216 4.0883 0.1215 36 1 4.1361 6.8289 -2.2776 37 1 3.0905 6.6072 -0.8543 38 1 4.8194 6.1943 -0.7615 39 1 3.9204 3.5137 -4.3793 40 1 6.4429 5.0260 -4.5741 41 1 6.3231 3.2511 -4.6341 42 1 7.4254 4.1459 -6.9244 43 1 9.2317 4.1194 -9.7310 44 1 5.8568 2.5297 -1.7016 45 1 4.7793 2.0436 -3.0387 46 1 2.9978 2.6123 1.3992 47 1 4.3093 0.5455 1.3391 48 1 3.6562 0.7738 2.9791 49 1 2.8996 -0.3999 1.8751 50 1 0.7867 0.7909 2.4460 51 1 1.5599 2.1417 3.3099 52 1 0.5273 2.4639 1.8963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215465432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:56 Heat of formation + Delta-G solvation = -115.435543 kcal Electronic energy + Delta-G solvation = -30846.493856 eV Core-core repulsion = 26653.100026 eV Total energy + Delta-G solvation = -4193.393830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.75649 -39.12166 -38.12683 -37.43652 -35.16198 -34.52722 -33.76059 -32.61149 -31.21545 -29.68807 -28.35751 -27.48086 -26.64665 -26.46095 -25.51109 -24.08798 -22.52344 -20.95946 -20.55011 -19.69467 -19.18864 -17.88766 -17.52339 -17.14565 -16.31990 -16.27742 -15.84542 -15.61653 -15.13289 -14.85831 -14.58817 -14.47413 -14.28586 -14.03243 -13.86157 -13.73848 -13.53349 -13.33094 -13.00456 -12.89228 -12.58920 -12.51602 -12.48903 -12.25772 -12.14252 -11.86818 -11.68993 -11.62123 -11.53384 -11.43221 -11.29447 -11.17215 -11.01883 -10.96420 -10.85154 -10.43515 -10.27356 -10.20633 -9.58553 -9.49526 -9.01116 -8.45364 -8.07539 -7.95588 -6.40969 -3.81854 2.42530 2.47312 3.20999 3.26611 3.31071 3.54316 3.90788 4.01903 4.11029 4.27010 4.27313 4.30101 4.43927 4.55775 4.72317 4.82341 4.83682 5.00959 5.03001 5.03699 5.10338 5.11989 5.14051 5.21722 5.26613 5.30873 5.34976 5.35712 5.43578 5.50442 5.53497 5.57623 5.63146 5.66674 5.75721 5.83097 5.85387 5.91813 5.98512 6.05254 6.05993 6.15877 6.28714 6.70140 7.15542 7.30914 7.55712 7.56665 8.00231 8.06424 8.61531 9.18304 9.54549 10.05874 10.76643 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.002129 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.282530 B =13146.205172 C =13748.832516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.353 6.353 3 C 0.082 3.918 4 H 0.086 0.914 5 C 0.529 3.471 6 O -0.517 6.517 7 N -0.619 5.619 8 C 0.098 3.902 9 C -0.095 4.095 10 H 0.092 0.908 11 C -0.137 4.137 12 C 0.080 3.920 13 H 0.096 0.904 14 N -0.655 5.655 15 C 0.048 3.952 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.076 3.924 28 C -0.111 4.111 29 C -0.143 4.143 30 C -0.149 4.149 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.352 0.648 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.068 0.932 50 H 0.062 0.938 51 H 0.062 0.938 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.869 -0.654 26.197 28.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.270 6.270 3 C 0.020 3.980 4 H 0.104 0.896 5 C 0.317 3.683 6 O -0.391 6.391 7 N -0.355 5.355 8 C -0.025 4.025 9 C -0.115 4.115 10 H 0.111 0.889 11 C -0.195 4.195 12 C -0.032 4.032 13 H 0.114 0.886 14 N -0.287 5.287 15 C -0.085 4.085 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.048 4.048 28 C -0.130 4.130 29 C -0.200 4.200 30 C -0.206 4.206 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.173 0.827 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.213 -0.784 25.538 27.902 hybrid contribution 0.595 -0.690 -0.706 1.153 sum -10.618 -1.474 24.833 27.047 Atomic orbital electron populations 1.23024 0.80720 1.03309 1.00310 1.88030 1.19565 1.24774 1.94659 1.21954 0.94217 0.87205 0.94629 0.89620 1.20169 0.84073 0.82213 0.81863 1.90746 1.64452 1.31437 1.52457 1.48674 1.36961 1.07201 1.42680 1.22740 1.01408 0.81732 0.96586 1.22240 0.99685 0.94638 0.94942 0.88928 1.21687 1.01135 0.94947 1.01731 1.22674 0.98928 0.92546 0.89055 0.88576 1.60220 1.13180 1.54592 1.00694 1.21744 0.91874 1.01016 0.93846 1.19774 0.86247 0.84608 0.86800 1.90525 1.20613 1.55227 1.80432 1.41852 1.08033 1.63952 1.06093 1.19650 0.95109 1.47393 0.80781 0.87988 1.25266 0.94686 0.97287 1.00696 1.69604 0.98756 1.50257 1.35675 0.85913 0.77459 0.79080 0.81743 1.19877 1.20975 1.19911 1.23009 0.89956 0.98516 0.93370 1.21610 0.97887 1.00320 0.93158 1.21724 0.98949 0.99031 1.00315 1.21915 0.97076 1.02200 0.99407 0.93804 0.89151 0.93399 0.90180 0.90476 0.91203 0.92554 0.92667 0.82703 0.89400 0.93689 0.77442 0.91810 0.91362 0.90337 0.89754 0.92802 0.92555 0.91318 0.91869 0.91921 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.39 101.05 1.05 1.22 16 2 O -0.35 -4.00 8.70 -55.00 -0.48 -4.48 16 3 C 0.08 0.80 1.63 -27.88 -0.05 0.76 16 4 H 0.09 0.67 7.22 -51.93 -0.37 0.30 16 5 C 0.53 7.03 6.34 -10.99 -0.07 6.96 16 6 O -0.52 -9.32 16.90 -14.22 -0.24 -9.56 16 7 N -0.62 -6.89 3.29 -169.98 -0.56 -7.45 16 8 C 0.10 0.75 4.90 -2.31 -0.01 0.74 16 9 C -0.10 -0.87 3.35 -88.93 -0.30 -1.16 16 10 H 0.09 0.98 8.06 -51.93 -0.42 0.56 16 11 C -0.14 -1.04 9.17 37.16 0.34 -0.70 16 12 C 0.08 0.90 2.88 -66.34 -0.19 0.71 16 13 H 0.10 0.98 7.57 -51.93 -0.39 0.59 16 14 N -0.66 -10.11 5.85 -106.54 -0.62 -10.73 16 15 C 0.05 0.82 6.00 -4.97 -0.03 0.79 16 16 C 0.44 10.39 7.82 -10.98 -0.09 10.30 16 17 O -0.58 -15.90 15.78 5.55 0.09 -15.81 16 18 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 19 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 23 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 27 C 0.08 0.91 6.52 -2.98 -0.02 0.90 16 28 C -0.11 -0.83 2.55 -90.62 -0.23 -1.06 16 29 C -0.14 -1.26 8.81 37.16 0.33 -0.94 16 30 C -0.15 -0.81 7.95 37.16 0.30 -0.51 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.26 6.04 -51.93 -0.31 -0.05 16 34 H 0.08 0.46 6.56 -51.93 -0.34 0.12 16 35 H 0.08 0.47 8.00 -51.93 -0.42 0.06 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 0.36 8.11 -51.93 -0.42 -0.06 16 39 H 0.35 5.99 7.94 -39.29 -0.31 5.68 16 40 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 42 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.15 7.59 -51.93 -0.39 0.75 16 46 H 0.08 0.54 6.04 -51.93 -0.31 0.22 16 47 H 0.05 0.58 7.56 -51.93 -0.39 0.18 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.69 7.38 -51.93 -0.38 0.31 16 50 H 0.06 0.37 6.86 -51.93 -0.36 0.02 16 51 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 52 H 0.05 0.25 8.11 -51.93 -0.42 -0.18 16 LS Contribution 412.80 15.07 6.22 6.22 Total: -1.00 -34.83 412.80 -8.04 -42.87 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -8.88 Total: 11.14 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 0.79 Total: 9.92 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.52 Total: -56.52 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.63 Total: -29.85 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.83 -8.04 -42.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215465432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.567 kcal (2) G-P(sol) polarization free energy of solvation -34.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds