Wall clock time and date at job start Wed Apr 1 2020 01:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 113.99851 * 2 1 4 4 H 1.09000 * 109.47409 * 340.92753 * 3 2 1 5 5 C 1.50700 * 109.47528 * 220.92993 * 3 2 1 6 6 O 1.21283 * 119.99417 * 351.62713 * 5 3 2 7 7 N 1.34773 * 120.00547 * 171.62966 * 5 3 2 8 8 C 1.48122 * 127.03108 * 4.68062 * 7 5 3 9 9 C 1.54591 * 103.42181 * 219.28527 * 8 7 5 10 10 H 1.08998 * 110.57448 * 81.17136 * 9 8 7 11 11 C 1.53002 * 110.99147 * 204.37494 * 9 8 7 12 12 C 1.54618 * 102.91365 * 322.87005 * 9 8 7 13 13 H 1.09001 * 110.41236 * 262.75777 * 12 9 8 14 14 N 1.46904 * 110.32861 * 140.59045 * 12 9 8 15 15 C 1.46900 * 111.00072 * 157.92459 * 14 12 9 16 16 C 1.50706 * 109.46786 * 180.02562 * 15 14 12 17 17 O 1.21290 * 120.00013 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99279 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99628 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00123 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00228 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99835 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00209 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46957 * 60.00042 * 23 21 19 25 25 H 1.48498 * 109.47058 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46854 * 300.00157 * 23 21 19 27 27 C 1.47487 * 127.03450 * 184.99700 * 7 5 3 28 28 C 1.53003 * 109.47114 * 100.92840 * 3 2 1 29 29 C 1.53000 * 109.47189 * 54.48826 * 28 3 2 30 30 C 1.53002 * 109.47040 * 294.48602 * 28 3 2 31 31 H 1.09000 * 109.47073 * 65.40590 * 1 2 3 32 32 H 1.09006 * 109.47012 * 185.40385 * 1 2 3 33 33 H 1.09004 * 109.47375 * 305.40242 * 1 2 3 34 34 H 1.08993 * 110.66220 * 337.76880 * 8 7 5 35 35 H 1.09000 * 110.65937 * 100.88771 * 8 7 5 36 36 H 1.08998 * 109.46993 * 173.65320 * 11 9 8 37 37 H 1.09001 * 109.47084 * 293.65582 * 11 9 8 38 38 H 1.08996 * 109.46786 * 53.65039 * 11 9 8 39 39 H 1.00898 * 110.99923 * 281.88110 * 14 12 9 40 40 H 1.08992 * 109.47029 * 299.99772 * 15 14 12 41 41 H 1.09000 * 109.47108 * 60.00328 * 15 14 12 42 42 H 0.96997 * 120.00603 * 0.02562 * 18 16 15 43 43 H 0.97003 * 120.00329 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.91298 * 273.87642 * 27 7 5 45 45 H 1.09003 * 109.91391 * 34.96399 * 27 7 5 46 46 H 1.09004 * 109.47072 * 174.48914 * 28 3 2 47 47 H 1.09004 * 109.46956 * 64.92989 * 29 28 3 48 48 H 1.08997 * 109.46997 * 184.92703 * 29 28 3 49 49 H 1.09002 * 109.46793 * 304.93405 * 29 28 3 50 50 H 1.09005 * 109.46774 * 66.80012 * 30 28 3 51 51 H 1.09006 * 109.46760 * 186.79685 * 30 28 3 52 52 H 1.08998 * 109.47209 * 306.79841 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2707 2.0324 -0.3358 5 6 3.1952 1.3278 -0.9308 6 8 3.6041 0.2946 -1.4167 7 7 3.8005 2.4959 -1.2232 8 6 3.4960 3.8268 -0.6487 9 6 3.6241 4.7785 -1.8602 10 1 2.7145 4.7589 -2.4605 11 6 3.9403 6.2048 -1.4057 12 6 4.8122 4.1784 -2.6469 13 1 5.7345 4.7060 -2.4036 14 7 4.5534 4.2448 -4.0914 15 6 5.8075 4.1859 -4.8542 16 6 5.5026 4.2570 -6.3284 17 8 4.3536 4.3473 -6.7063 18 7 6.5066 4.2192 -7.2266 19 6 6.2292 4.2833 -8.5678 20 1 5.2062 4.3645 -8.9044 21 6 7.2643 4.2449 -9.4940 22 7 8.5091 4.1466 -9.0844 23 14 6.8864 4.3330 -11.3212 24 1 6.1843 5.6068 -11.6206 25 1 8.1541 4.2729 -12.0923 26 1 6.0204 3.1887 -11.7033 27 6 4.8972 2.7116 -2.1855 28 6 2.4675 1.6601 1.4164 29 6 3.4002 0.5662 1.9401 30 6 1.2476 1.7722 2.3330 31 1 -0.3633 0.4277 -0.9344 32 1 -0.3633 -1.0232 0.0968 33 1 -0.3634 0.5954 0.8377 34 1 2.4827 3.8500 -0.2479 35 1 4.2216 4.0883 0.1215 36 1 4.1361 6.8289 -2.2776 37 1 3.0905 6.6072 -0.8543 38 1 4.8194 6.1943 -0.7615 39 1 3.9204 3.5137 -4.3793 40 1 6.4429 5.0260 -4.5741 41 1 6.3231 3.2511 -4.6341 42 1 7.4254 4.1459 -6.9244 43 1 9.2317 4.1194 -9.7310 44 1 5.8568 2.5297 -1.7016 45 1 4.7793 2.0436 -3.0387 46 1 2.9978 2.6123 1.3992 47 1 4.3093 0.5455 1.3391 48 1 3.6562 0.7738 2.9791 49 1 2.8996 -0.3999 1.8751 50 1 0.7867 0.7909 2.4460 51 1 1.5599 2.1417 3.3099 52 1 0.5273 2.4639 1.8963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215465432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:55 Heat of formation + Delta-G solvation = -141.395978 kcal Electronic energy + Delta-G solvation = -30847.619585 eV Core-core repulsion = 26653.100026 eV Total energy + Delta-G solvation = -4194.519559 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.64527 -40.30813 -39.61870 -38.45484 -36.26639 -35.80491 -35.27533 -33.49218 -33.24479 -30.64248 -29.22690 -28.19845 -27.69431 -27.31037 -26.52467 -25.63644 -23.47435 -21.63863 -21.52532 -20.89246 -20.55258 -19.91392 -18.41921 -17.98340 -17.71878 -17.12213 -16.91962 -16.75009 -16.42215 -16.23366 -16.03656 -15.62580 -15.30572 -15.24526 -14.88078 -14.71914 -14.58041 -14.16283 -13.98723 -13.77241 -13.61271 -13.49380 -13.46847 -13.27794 -13.16428 -13.03243 -12.94409 -12.77910 -12.48578 -12.45469 -12.31812 -12.14489 -12.08448 -12.02898 -11.94269 -11.65501 -11.58716 -11.52248 -11.07925 -10.42907 -10.37683 -10.04047 -9.94624 -9.30462 -8.48290 -5.97281 1.38328 1.40120 1.45872 1.51232 1.63775 2.03060 2.27551 2.82207 2.90669 3.18634 3.31050 3.47466 3.53470 3.65367 3.72564 3.82293 4.06441 4.09456 4.14731 4.26936 4.29701 4.35552 4.44927 4.47145 4.48385 4.51074 4.55145 4.62735 4.69075 4.70291 4.79780 4.81892 4.82260 4.88701 4.92046 4.99464 5.11601 5.13318 5.17502 5.35546 5.36171 5.39100 5.41807 5.53178 5.88128 6.03852 6.08063 6.24042 6.43849 6.57897 7.04076 7.10428 7.53853 8.09165 8.68822 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.002129 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.282530 B =13146.205172 C =13748.832516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.386 6.386 3 C 0.084 3.916 4 H 0.109 0.891 5 C 0.520 3.480 6 O -0.580 6.580 7 N -0.616 5.616 8 C 0.100 3.900 9 C -0.090 4.090 10 H 0.075 0.925 11 C -0.132 4.132 12 C 0.083 3.917 13 H 0.116 0.884 14 N -0.664 5.664 15 C 0.063 3.937 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.269 1.269 26 H -0.274 1.274 27 C 0.076 3.924 28 C -0.105 4.105 29 C -0.141 4.141 30 C -0.145 4.145 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.339 0.661 40 H 0.114 0.886 41 H 0.061 0.939 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.078 0.922 45 H 0.044 0.956 46 H 0.103 0.897 47 H 0.027 0.973 48 H 0.076 0.924 49 H 0.049 0.951 50 H 0.056 0.944 51 H 0.076 0.924 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.307 1.166 28.563 30.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.304 6.304 3 C 0.023 3.977 4 H 0.127 0.873 5 C 0.309 3.691 6 O -0.459 6.459 7 N -0.351 5.351 8 C -0.022 4.022 9 C -0.110 4.110 10 H 0.093 0.907 11 C -0.189 4.189 12 C -0.028 4.028 13 H 0.134 0.866 14 N -0.295 5.295 15 C -0.070 4.070 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.195 1.195 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.049 4.049 28 C -0.124 4.124 29 C -0.198 4.198 30 C -0.202 4.202 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.158 0.842 40 H 0.132 0.868 41 H 0.079 0.921 42 H 0.231 0.769 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.121 0.879 47 H 0.046 0.954 48 H 0.095 0.905 49 H 0.068 0.932 50 H 0.075 0.925 51 H 0.095 0.905 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.638 1.085 27.950 30.296 hybrid contribution 0.714 -1.266 -1.410 2.025 sum -10.924 -0.181 26.540 28.701 Atomic orbital electron populations 1.23209 0.78990 1.04331 1.01311 1.87999 1.21592 1.25990 1.94824 1.22107 0.93117 0.87318 0.95198 0.87308 1.21001 0.84681 0.81767 0.81651 1.90705 1.66427 1.33759 1.55045 1.48780 1.36127 1.08170 1.42027 1.23027 1.03952 0.78915 0.96260 1.22210 0.97746 0.96067 0.94949 0.90669 1.21652 1.02830 0.93077 1.01372 1.22833 1.01065 0.92319 0.86557 0.86610 1.60285 1.12094 1.54170 1.02943 1.21619 0.93165 1.02820 0.89349 1.20892 0.85215 0.82280 0.89230 1.90490 1.22284 1.56507 1.81840 1.41929 1.08650 1.64639 1.05757 1.19622 0.94509 1.49782 0.82572 0.90404 1.26055 0.94373 0.96237 1.04645 1.69664 0.99279 1.49931 1.37145 0.84989 0.77783 0.78955 0.76615 1.19524 1.19373 1.19895 1.22928 0.90935 0.98281 0.92754 1.21644 0.98681 1.00252 0.91790 1.21694 0.98006 0.98970 1.01125 1.21901 0.96269 1.02435 0.99617 0.93900 0.88622 0.90864 0.87483 0.87684 0.93225 0.90593 0.90835 0.84192 0.86822 0.92138 0.76931 0.91249 0.90417 0.93788 0.87921 0.95419 0.90527 0.93157 0.92538 0.90481 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.39 113.37 1.18 1.42 16 2 O -0.39 -8.71 8.70 -130.08 -1.13 -9.84 16 3 C 0.08 1.54 1.63 29.85 0.05 1.59 16 4 H 0.11 1.43 7.22 -2.39 -0.02 1.41 16 5 C 0.52 13.90 6.34 87.66 0.56 14.46 16 6 O -0.58 -22.22 16.90 15.87 0.27 -21.95 16 7 N -0.62 -13.13 3.29 -810.09 -2.67 -15.80 16 8 C 0.10 1.18 4.90 86.61 0.42 1.60 16 9 C -0.09 -1.42 3.35 -9.70 -0.03 -1.45 16 10 H 0.07 1.49 8.06 -2.39 -0.02 1.47 16 11 C -0.13 -1.55 9.17 71.98 0.66 -0.89 16 12 C 0.08 1.75 2.88 45.80 0.13 1.88 16 13 H 0.12 2.02 7.57 -2.39 -0.02 2.01 16 14 N -0.66 -20.45 5.85 -490.97 -2.87 -23.32 16 15 C 0.06 2.13 6.00 85.56 0.51 2.65 16 16 C 0.44 21.09 7.82 87.66 0.69 21.77 16 17 O -0.62 -35.28 15.78 -3.06 -0.05 -35.33 16 18 N -0.57 -29.89 5.29 -306.98 -1.62 -31.52 16 19 C -0.34 -19.39 9.68 84.04 0.81 -18.58 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 22 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 23 Si 0.99 43.63 29.55 68.60 2.03 45.65 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 27 C 0.08 1.81 6.52 86.53 0.56 2.38 16 28 C -0.10 -1.30 2.55 -10.79 -0.03 -1.32 16 29 C -0.14 -2.37 8.81 71.98 0.63 -1.73 16 30 C -0.15 -1.06 7.95 71.98 0.57 -0.48 16 31 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.07 0.62 6.04 -2.38 -0.01 0.60 16 34 H 0.11 0.75 6.56 -2.39 -0.02 0.73 16 35 H 0.11 0.76 8.00 -2.39 -0.02 0.74 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 0.62 8.11 -2.39 -0.02 0.60 16 39 H 0.34 11.98 7.94 -89.70 -0.71 11.27 16 40 H 0.11 3.31 8.07 -2.39 -0.02 3.29 16 41 H 0.06 1.89 8.11 -2.39 -0.02 1.87 16 42 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 43 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.04 1.36 7.59 -2.39 -0.02 1.34 16 46 H 0.10 0.88 6.04 -2.39 -0.01 0.87 16 47 H 0.03 0.59 7.56 -2.38 -0.02 0.57 16 48 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.05 1.02 7.38 -2.39 -0.02 1.00 16 50 H 0.06 0.51 6.86 -2.38 -0.02 0.49 16 51 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 52 H 0.07 0.31 8.11 -2.39 -0.02 0.29 16 Total: -1.00 -80.80 412.80 0.91 -79.89 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: -0.52 Total: 39.15 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 7.19 Total: 23.03 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -6.88 Total: -120.60 kcal Atomic # 8 Polarization: -66.21 SS G_CDS: -0.91 Total: -67.12 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -80.80 0.91 -79.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215465432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.509 kcal (2) G-P(sol) polarization free energy of solvation -80.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds