Wall clock time and date at job start Wed Apr 1 2020 01:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99839 * 2 1 4 4 H 1.09004 * 109.46980 * 7.47170 * 3 2 1 5 5 C 1.50693 * 109.46688 * 127.47007 * 3 2 1 6 6 O 1.21279 * 120.00661 * 14.20917 * 5 3 2 7 7 N 1.34786 * 119.99741 * 194.47971 * 5 3 2 8 8 C 1.48114 * 127.03230 * 354.81131 * 7 5 3 9 9 C 1.54594 * 103.42520 * 219.28568 * 8 7 5 10 10 H 1.09009 * 110.57571 * 81.16731 * 9 8 7 11 11 C 1.52993 * 110.99394 * 204.37528 * 9 8 7 12 12 C 1.54625 * 102.91235 * 322.87091 * 9 8 7 13 13 H 1.08990 * 110.41152 * 262.76242 * 12 9 8 14 14 N 1.46897 * 110.32488 * 140.58657 * 12 9 8 15 15 C 1.46902 * 110.99537 * 157.92744 * 14 12 9 16 16 C 1.50704 * 109.47057 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00107 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99879 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99864 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00134 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00359 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00578 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99670 * 359.97438 * 21 19 18 24 24 H 1.48513 * 109.46956 * 90.00452 * 23 21 19 25 25 H 1.48497 * 109.47581 * 210.00008 * 23 21 19 26 26 H 1.48501 * 109.47431 * 330.00770 * 23 21 19 27 27 C 1.47479 * 127.03184 * 175.13105 * 7 5 3 28 28 C 1.52994 * 109.46861 * 247.47167 * 3 2 1 29 29 C 1.52997 * 109.47321 * 305.75952 * 28 3 2 30 30 C 1.52997 * 109.47651 * 65.76262 * 28 3 2 31 31 H 1.09002 * 109.47083 * 66.30362 * 1 2 3 32 32 H 1.09000 * 109.46851 * 186.30033 * 1 2 3 33 33 H 1.08990 * 109.47433 * 306.30459 * 1 2 3 34 34 H 1.08998 * 110.66339 * 337.77327 * 8 7 5 35 35 H 1.09001 * 110.66069 * 100.88364 * 8 7 5 36 36 H 1.08997 * 109.47311 * 173.65281 * 11 9 8 37 37 H 1.09001 * 109.47062 * 293.65734 * 11 9 8 38 38 H 1.09006 * 109.47008 * 53.65126 * 11 9 8 39 39 H 1.00895 * 111.00335 * 281.87507 * 14 12 9 40 40 H 1.08996 * 109.47087 * 299.99947 * 15 14 12 41 41 H 1.09001 * 109.47333 * 60.00187 * 15 14 12 42 42 H 0.96995 * 120.00084 * 0.02562 * 18 16 15 43 43 H 0.96995 * 120.00271 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.91100 * 273.87507 * 27 7 5 45 45 H 1.08999 * 109.92046 * 34.96141 * 27 7 5 46 46 H 1.09000 * 109.47275 * 185.76230 * 28 3 2 47 47 H 1.08998 * 109.47012 * 60.00382 * 29 28 3 48 48 H 1.09008 * 109.47400 * 180.02562 * 29 28 3 49 49 H 1.08999 * 109.46987 * 300.00313 * 29 28 3 50 50 H 1.09000 * 109.47108 * 56.85287 * 30 28 3 51 51 H 1.08999 * 109.47310 * 176.85079 * 30 28 3 52 52 H 1.09000 * 109.47362 * 296.85608 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2271 2.0519 0.1336 5 6 3.0041 1.4128 1.1276 6 8 3.3892 0.4119 1.6940 7 7 3.4610 2.6216 1.5105 8 6 3.1774 3.9264 0.8695 9 6 4.5324 4.6666 0.9474 10 1 5.1927 4.3427 0.1427 11 6 4.3321 6.1827 0.9040 12 6 5.0879 4.2268 2.3217 13 1 4.8722 4.9815 3.0780 14 7 6.5352 3.9911 2.2354 15 6 7.1645 4.0896 3.5592 16 6 8.6457 3.8431 3.4309 17 8 9.1294 3.6080 2.3438 18 7 9.4328 3.8839 4.5242 19 6 10.7801 3.6592 4.4076 20 1 11.2108 3.4489 3.4397 21 6 11.5916 3.7007 5.5347 22 7 12.8831 3.4857 5.4229 23 14 10.8467 4.0636 7.2089 24 1 10.4379 2.7905 7.8553 25 1 11.8516 4.7501 8.0597 26 1 9.6581 4.9382 7.0429 27 6 4.3507 2.9149 2.6495 28 6 2.7225 1.5466 -1.3324 29 6 3.7228 0.4174 -1.5876 30 6 1.6921 1.5803 -2.4629 31 1 -0.3633 0.4130 -0.9410 32 1 -0.3633 -1.0215 0.1128 33 1 -0.3634 0.6084 0.8281 34 1 2.8750 3.7874 -0.1684 35 1 2.4124 4.4694 1.4245 36 1 5.2869 6.6804 1.0732 37 1 3.9406 6.4697 -0.0720 38 1 3.6257 6.4783 1.6798 39 1 6.7314 3.0987 1.8074 40 1 6.9964 5.0859 3.9681 41 1 6.7282 3.3452 4.2252 42 1 9.0459 4.0716 5.3936 43 1 13.4496 3.5151 6.2097 44 1 3.7620 3.0372 3.5586 45 1 5.0684 2.1048 2.7784 46 1 3.2515 2.4988 -1.2945 47 1 3.1938 -0.5349 -1.6256 48 1 4.2306 0.5894 -2.5367 49 1 4.4569 0.3934 -0.7823 50 1 0.9474 2.3480 -2.2529 51 1 2.1927 1.8075 -3.4041 52 1 1.2022 0.6095 -2.5370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215465433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:59 Heat of formation + Delta-G solvation = -107.869568 kcal Electronic energy + Delta-G solvation = -31020.376232 eV Core-core repulsion = 26827.310487 eV Total energy + Delta-G solvation = -4193.065745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.78927 -39.16243 -38.28193 -37.45501 -35.20550 -34.62875 -33.82762 -32.67512 -31.65081 -29.70698 -28.32745 -27.40415 -26.73041 -26.59700 -25.63019 -23.95878 -22.48872 -21.00721 -20.53499 -19.78246 -19.34279 -18.32331 -17.50662 -17.07229 -16.62334 -16.21757 -15.76776 -15.65692 -15.30129 -14.85221 -14.83137 -14.50352 -14.38240 -14.06949 -13.89396 -13.78008 -13.35658 -13.22819 -12.96565 -12.91474 -12.69560 -12.57549 -12.40871 -12.39109 -12.29184 -12.05994 -11.91637 -11.74158 -11.57084 -11.38135 -11.31997 -11.17750 -11.14253 -11.08383 -10.84937 -10.59026 -10.43611 -9.96711 -9.57634 -9.56488 -9.06777 -8.57639 -8.19552 -8.14066 -6.30174 -3.81647 2.37832 2.45587 3.02985 3.07596 3.15722 3.47678 3.74117 3.96820 4.07176 4.11213 4.25200 4.30863 4.40290 4.52316 4.72251 4.75008 4.84426 4.89804 4.91789 4.96270 5.00989 5.05303 5.07091 5.22572 5.24256 5.28920 5.30825 5.39296 5.46037 5.49119 5.50264 5.57638 5.60179 5.64216 5.75117 5.76016 5.82633 5.88165 5.92532 5.93137 6.02318 6.14168 6.17459 6.65334 7.04193 7.26535 7.48514 7.58711 7.96408 8.15144 8.60270 8.95753 9.43051 9.82950 10.82940 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017302 B = 0.002283 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.907544 B =12259.691557 C =12603.297272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.083 3.917 4 H 0.084 0.916 5 C 0.524 3.476 6 O -0.516 6.516 7 N -0.619 5.619 8 C 0.094 3.906 9 C -0.094 4.094 10 H 0.094 0.906 11 C -0.137 4.137 12 C 0.080 3.920 13 H 0.096 0.904 14 N -0.655 5.655 15 C 0.045 3.955 16 C 0.450 3.550 17 O -0.564 6.564 18 N -0.590 5.590 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.074 3.926 28 C -0.106 4.106 29 C -0.144 4.144 30 C -0.146 4.146 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.354 0.646 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.053 0.947 51 H 0.063 0.937 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.755 2.344 -10.405 31.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.269 6.269 3 C 0.022 3.978 4 H 0.102 0.898 5 C 0.311 3.689 6 O -0.390 6.390 7 N -0.356 5.356 8 C -0.029 4.029 9 C -0.114 4.114 10 H 0.112 0.888 11 C -0.195 4.195 12 C -0.032 4.032 13 H 0.114 0.886 14 N -0.287 5.287 15 C -0.088 4.088 16 C 0.235 3.765 17 O -0.446 6.446 18 N -0.230 5.230 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.050 4.050 28 C -0.124 4.124 29 C -0.201 4.201 30 C -0.204 4.204 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.175 0.825 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.104 0.896 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.082 0.918 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.761 1.952 -10.930 30.830 hybrid contribution -0.915 -0.258 2.027 2.239 sum -29.677 1.694 -8.902 31.029 Atomic orbital electron populations 1.22970 0.80832 1.03266 0.99979 1.88050 1.19446 1.24846 1.94537 1.22020 0.95145 0.87064 0.93620 0.89805 1.20430 0.82386 0.81745 0.84309 1.90745 1.57761 1.34969 1.55548 1.48714 1.49557 1.06093 1.31239 1.22794 0.98106 0.83391 0.98584 1.22227 0.94957 0.95962 0.98225 0.88786 1.21689 1.02604 0.93721 1.01500 1.22672 0.87829 0.95043 0.97665 0.88628 1.60209 1.07017 1.40715 1.20747 1.21779 0.94438 1.01804 0.90745 1.19674 0.87354 0.84307 0.85130 1.90571 1.75181 1.52432 1.26400 1.42201 1.08634 1.64490 1.07642 1.19428 0.80385 1.45401 0.98116 0.86281 1.25042 0.95307 0.97666 0.98177 1.69619 1.03529 1.48515 1.30441 0.86671 0.79264 0.79009 0.84430 1.19650 1.20172 1.19475 1.23005 0.94069 0.98939 0.89021 1.21538 0.97328 1.00684 0.92894 1.21725 0.98366 0.98368 1.01635 1.21851 0.98438 1.02126 0.97947 0.93665 0.89178 0.93978 0.89823 0.90684 0.91184 0.92482 0.92729 0.82452 0.89292 0.93600 0.79699 0.91612 0.91458 0.90210 0.89603 0.91481 0.92426 0.92439 0.92807 0.91819 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.62 101.05 1.07 1.25 16 2 O -0.35 -3.79 8.63 -54.73 -0.47 -4.27 16 3 C 0.08 0.78 1.61 -27.89 -0.04 0.74 16 4 H 0.08 0.57 7.45 -51.93 -0.39 0.18 16 5 C 0.52 6.69 6.21 -10.98 -0.07 6.62 16 6 O -0.52 -9.04 16.85 -13.94 -0.23 -9.28 16 7 N -0.62 -6.58 3.29 -169.99 -0.56 -7.14 16 8 C 0.09 0.68 6.07 -2.32 -0.01 0.66 16 9 C -0.09 -0.81 3.35 -88.93 -0.30 -1.11 16 10 H 0.09 0.97 8.06 -51.92 -0.42 0.55 16 11 C -0.14 -0.98 9.17 37.15 0.34 -0.64 16 12 C 0.08 0.84 2.88 -66.33 -0.19 0.65 16 13 H 0.10 0.89 7.57 -51.93 -0.39 0.50 16 14 N -0.65 -9.64 5.85 -106.54 -0.62 -10.26 16 15 C 0.05 0.72 6.00 -4.97 -0.03 0.69 16 16 C 0.45 10.18 7.82 -10.98 -0.09 10.09 16 17 O -0.56 -15.20 15.78 5.55 0.09 -15.11 16 18 N -0.59 -14.11 5.09 -10.96 -0.06 -14.16 16 19 C -0.30 -8.69 10.16 -14.94 -0.15 -8.84 16 20 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.94 13.96 55.50 0.77 -25.17 16 23 Si 0.88 19.48 27.73 -169.99 -4.71 14.77 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 27 C 0.07 0.84 6.56 -2.98 -0.02 0.82 16 28 C -0.11 -0.86 2.51 -90.63 -0.23 -1.08 16 29 C -0.14 -1.47 8.81 37.16 0.33 -1.15 16 30 C -0.15 -0.87 8.71 37.16 0.32 -0.54 16 31 H 0.04 0.22 7.33 -51.93 -0.38 -0.16 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.25 8.06 -51.93 -0.42 -0.17 16 34 H 0.08 0.47 5.38 -51.93 -0.28 0.19 16 35 H 0.07 0.42 8.02 -51.93 -0.42 0.00 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.05 0.32 8.11 -51.93 -0.42 -0.10 16 39 H 0.35 5.82 7.94 -39.29 -0.31 5.51 16 40 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 41 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 42 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.11 7.50 -51.93 -0.39 0.72 16 46 H 0.09 0.63 5.89 -51.93 -0.31 0.33 16 47 H 0.07 0.73 7.54 -51.93 -0.39 0.34 16 48 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 49 H 0.06 0.74 7.39 -51.93 -0.38 0.35 16 50 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 51 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 52 H 0.06 0.40 7.34 -51.93 -0.38 0.02 16 LS Contribution 412.13 15.07 6.21 6.21 Total: -1.00 -36.13 412.13 -7.62 -43.75 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.87 Total: 11.45 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 0.84 Total: 9.20 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.46 Total: -56.73 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.62 Total: -28.66 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.13 -7.62 -43.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215465433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.117 kcal (2) G-P(sol) polarization free energy of solvation -36.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds