Wall clock time and date at job start Wed Apr 1 2020 01:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99839 * 2 1 4 4 H 1.09004 * 109.46980 * 7.47170 * 3 2 1 5 5 C 1.50693 * 109.46688 * 127.47007 * 3 2 1 6 6 O 1.21279 * 120.00661 * 14.20917 * 5 3 2 7 7 N 1.34786 * 119.99741 * 194.47971 * 5 3 2 8 8 C 1.48114 * 127.03230 * 354.81131 * 7 5 3 9 9 C 1.54594 * 103.42520 * 219.28568 * 8 7 5 10 10 H 1.09009 * 110.57571 * 81.16731 * 9 8 7 11 11 C 1.52993 * 110.99394 * 204.37528 * 9 8 7 12 12 C 1.54625 * 102.91235 * 322.87091 * 9 8 7 13 13 H 1.08990 * 110.41152 * 262.76242 * 12 9 8 14 14 N 1.46897 * 110.32488 * 140.58657 * 12 9 8 15 15 C 1.46902 * 110.99537 * 157.92744 * 14 12 9 16 16 C 1.50704 * 109.47057 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00107 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99879 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99864 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00134 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00359 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00578 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99670 * 359.97438 * 21 19 18 24 24 H 1.48513 * 109.46956 * 90.00452 * 23 21 19 25 25 H 1.48497 * 109.47581 * 210.00008 * 23 21 19 26 26 H 1.48501 * 109.47431 * 330.00770 * 23 21 19 27 27 C 1.47479 * 127.03184 * 175.13105 * 7 5 3 28 28 C 1.52994 * 109.46861 * 247.47167 * 3 2 1 29 29 C 1.52997 * 109.47321 * 305.75952 * 28 3 2 30 30 C 1.52997 * 109.47651 * 65.76262 * 28 3 2 31 31 H 1.09002 * 109.47083 * 66.30362 * 1 2 3 32 32 H 1.09000 * 109.46851 * 186.30033 * 1 2 3 33 33 H 1.08990 * 109.47433 * 306.30459 * 1 2 3 34 34 H 1.08998 * 110.66339 * 337.77327 * 8 7 5 35 35 H 1.09001 * 110.66069 * 100.88364 * 8 7 5 36 36 H 1.08997 * 109.47311 * 173.65281 * 11 9 8 37 37 H 1.09001 * 109.47062 * 293.65734 * 11 9 8 38 38 H 1.09006 * 109.47008 * 53.65126 * 11 9 8 39 39 H 1.00895 * 111.00335 * 281.87507 * 14 12 9 40 40 H 1.08996 * 109.47087 * 299.99947 * 15 14 12 41 41 H 1.09001 * 109.47333 * 60.00187 * 15 14 12 42 42 H 0.96995 * 120.00084 * 0.02562 * 18 16 15 43 43 H 0.96995 * 120.00271 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.91100 * 273.87507 * 27 7 5 45 45 H 1.08999 * 109.92046 * 34.96141 * 27 7 5 46 46 H 1.09000 * 109.47275 * 185.76230 * 28 3 2 47 47 H 1.08998 * 109.47012 * 60.00382 * 29 28 3 48 48 H 1.09008 * 109.47400 * 180.02562 * 29 28 3 49 49 H 1.08999 * 109.46987 * 300.00313 * 29 28 3 50 50 H 1.09000 * 109.47108 * 56.85287 * 30 28 3 51 51 H 1.08999 * 109.47310 * 176.85079 * 30 28 3 52 52 H 1.09000 * 109.47362 * 296.85608 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2271 2.0519 0.1336 5 6 3.0041 1.4128 1.1276 6 8 3.3892 0.4119 1.6940 7 7 3.4610 2.6216 1.5105 8 6 3.1774 3.9264 0.8695 9 6 4.5324 4.6666 0.9474 10 1 5.1927 4.3427 0.1427 11 6 4.3321 6.1827 0.9040 12 6 5.0879 4.2268 2.3217 13 1 4.8722 4.9815 3.0780 14 7 6.5352 3.9911 2.2354 15 6 7.1645 4.0896 3.5592 16 6 8.6457 3.8431 3.4309 17 8 9.1294 3.6080 2.3438 18 7 9.4328 3.8839 4.5242 19 6 10.7801 3.6592 4.4076 20 1 11.2108 3.4489 3.4397 21 6 11.5916 3.7007 5.5347 22 7 12.8831 3.4857 5.4229 23 14 10.8467 4.0636 7.2089 24 1 10.4379 2.7905 7.8553 25 1 11.8516 4.7501 8.0597 26 1 9.6581 4.9382 7.0429 27 6 4.3507 2.9149 2.6495 28 6 2.7225 1.5466 -1.3324 29 6 3.7228 0.4174 -1.5876 30 6 1.6921 1.5803 -2.4629 31 1 -0.3633 0.4130 -0.9410 32 1 -0.3633 -1.0215 0.1128 33 1 -0.3634 0.6084 0.8281 34 1 2.8750 3.7874 -0.1684 35 1 2.4124 4.4694 1.4245 36 1 5.2869 6.6804 1.0732 37 1 3.9406 6.4697 -0.0720 38 1 3.6257 6.4783 1.6798 39 1 6.7314 3.0987 1.8074 40 1 6.9964 5.0859 3.9681 41 1 6.7282 3.3452 4.2252 42 1 9.0459 4.0716 5.3936 43 1 13.4496 3.5151 6.2097 44 1 3.7620 3.0372 3.5586 45 1 5.0684 2.1048 2.7784 46 1 3.2515 2.4988 -1.2945 47 1 3.1938 -0.5349 -1.6256 48 1 4.2306 0.5894 -2.5367 49 1 4.4569 0.3934 -0.7823 50 1 0.9474 2.3480 -2.2529 51 1 2.1927 1.8075 -3.4041 52 1 1.2022 0.6095 -2.5370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215465433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:58 Heat of formation + Delta-G solvation = -136.372670 kcal Electronic energy + Delta-G solvation = -31021.612220 eV Core-core repulsion = 26827.310487 eV Total energy + Delta-G solvation = -4194.301732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.63167 -40.41081 -39.63741 -38.40070 -36.28601 -35.85335 -35.36869 -33.77863 -33.45162 -30.63862 -29.17626 -28.18370 -27.77448 -27.30110 -26.56245 -25.50765 -23.41309 -21.70741 -21.48400 -21.13478 -20.58892 -20.21003 -18.35378 -17.87702 -17.73581 -17.34405 -16.95407 -16.64871 -16.50359 -16.34944 -15.82555 -15.61441 -15.30905 -15.12130 -14.93470 -14.67501 -14.58296 -14.36655 -14.20965 -13.98070 -13.69714 -13.57406 -13.48416 -13.33237 -13.14640 -13.00048 -12.97201 -12.78881 -12.50016 -12.43131 -12.24920 -12.08783 -12.03520 -11.99888 -11.88232 -11.75344 -11.54573 -11.53590 -11.17171 -10.46611 -10.38635 -10.27137 -9.95091 -9.28653 -8.42916 -6.04159 1.28619 1.34551 1.43473 1.46456 1.68121 1.93459 2.21753 2.67585 2.86422 3.13260 3.26204 3.40331 3.54727 3.66254 3.71697 3.82392 4.04546 4.10443 4.12172 4.17542 4.26162 4.35256 4.39839 4.41786 4.49525 4.52943 4.55299 4.61230 4.70214 4.71944 4.78511 4.82295 4.83666 4.89401 4.91737 4.99335 5.11584 5.15171 5.18357 5.32249 5.37171 5.41263 5.50924 5.54546 5.89255 6.03903 6.05370 6.22260 6.45483 6.57613 6.86016 7.06220 7.37383 7.94194 8.74812 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017302 B = 0.002283 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.907544 B =12259.691557 C =12603.297272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.385 6.385 3 C 0.088 3.912 4 H 0.120 0.880 5 C 0.514 3.486 6 O -0.580 6.580 7 N -0.618 5.618 8 C 0.097 3.903 9 C -0.091 4.091 10 H 0.071 0.929 11 C -0.131 4.131 12 C 0.084 3.916 13 H 0.122 0.878 14 N -0.669 5.669 15 C 0.060 3.940 16 C 0.447 3.553 17 O -0.616 6.616 18 N -0.590 5.590 19 C -0.330 4.330 20 H 0.053 0.947 21 C -0.017 4.017 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.260 1.260 25 H -0.273 1.273 26 H -0.228 1.228 27 C 0.073 3.927 28 C -0.102 4.102 29 C -0.142 4.142 30 C -0.141 4.141 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.339 0.661 40 H 0.124 0.876 41 H 0.072 0.928 42 H 0.390 0.610 43 H 0.279 0.721 44 H 0.084 0.916 45 H 0.043 0.957 46 H 0.096 0.904 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.020 0.980 50 H 0.078 0.922 51 H 0.069 0.931 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.429 5.154 -9.278 36.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.303 6.303 3 C 0.027 3.973 4 H 0.137 0.863 5 C 0.303 3.697 6 O -0.459 6.459 7 N -0.353 5.353 8 C -0.025 4.025 9 C -0.111 4.111 10 H 0.089 0.911 11 C -0.189 4.189 12 C -0.027 4.027 13 H 0.140 0.860 14 N -0.300 5.300 15 C -0.073 4.073 16 C 0.235 3.765 17 O -0.500 6.500 18 N -0.232 5.232 19 C -0.459 4.459 20 H 0.072 0.928 21 C -0.215 4.215 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.184 1.184 25 H -0.198 1.198 26 H -0.151 1.151 27 C -0.052 4.052 28 C -0.121 4.121 29 C -0.199 4.199 30 C -0.198 4.198 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.158 0.842 40 H 0.142 0.858 41 H 0.090 0.910 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.062 0.938 46 H 0.114 0.886 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.039 0.961 50 H 0.097 0.903 51 H 0.088 0.912 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -33.486 4.822 -9.823 35.228 hybrid contribution 0.597 -1.180 1.531 2.023 sum -32.888 3.643 -8.292 34.112 Atomic orbital electron populations 1.23180 0.78921 1.03980 1.01584 1.88024 1.21698 1.25934 1.94606 1.22122 0.95133 0.87623 0.92445 0.86268 1.21241 0.82494 0.81384 0.84534 1.90705 1.60156 1.37176 1.57840 1.48832 1.48567 1.06920 1.30948 1.23057 0.97844 0.81352 1.00205 1.22205 0.95269 0.97472 0.96143 0.91094 1.21649 1.02189 0.91750 1.03302 1.22842 0.84985 0.95087 0.99795 0.86039 1.60271 1.09874 1.39829 1.20043 1.21726 0.88956 1.04385 0.92192 1.21023 0.90120 0.81533 0.83846 1.90548 1.76996 1.53964 1.28536 1.42025 1.06954 1.65136 1.09095 1.18996 0.83014 1.47669 0.96202 0.92844 1.26151 0.95482 0.96382 1.03494 1.69805 1.05723 1.49499 1.32462 0.85354 0.79667 0.79898 0.76529 1.18446 1.19846 1.15084 1.22970 0.93932 0.98027 0.90228 1.21564 0.97372 0.99820 0.93313 1.21693 0.98257 0.99221 1.00758 1.21819 0.98183 1.02756 0.97014 0.91323 0.88992 0.93080 0.87737 0.87432 0.93194 0.90855 0.90578 0.84247 0.85778 0.91038 0.77415 0.91116 0.89779 0.93804 0.88578 0.92630 0.91300 0.96078 0.90259 0.91181 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.62 113.37 1.20 1.42 16 2 O -0.38 -8.04 8.63 -130.34 -1.13 -9.17 16 3 C 0.09 1.50 1.61 29.84 0.05 1.55 16 4 H 0.12 1.13 7.45 -2.38 -0.02 1.11 16 5 C 0.51 13.04 6.21 87.65 0.54 13.58 16 6 O -0.58 -21.45 16.85 15.62 0.26 -21.18 16 7 N -0.62 -12.19 3.29 -810.10 -2.67 -14.86 16 8 C 0.10 1.02 6.07 86.61 0.53 1.55 16 9 C -0.09 -1.33 3.35 -9.70 -0.03 -1.37 16 10 H 0.07 1.39 8.06 -2.38 -0.02 1.38 16 11 C -0.13 -1.38 9.17 71.98 0.66 -0.72 16 12 C 0.08 1.57 2.88 45.81 0.13 1.70 16 13 H 0.12 1.70 7.57 -2.39 -0.02 1.69 16 14 N -0.67 -19.31 5.85 -490.97 -2.87 -22.18 16 15 C 0.06 1.80 6.00 85.56 0.51 2.31 16 16 C 0.45 20.54 7.82 87.66 0.69 21.22 16 17 O -0.62 -35.06 15.78 -3.05 -0.05 -35.10 16 18 N -0.59 -28.33 5.09 -306.98 -1.56 -29.89 16 19 C -0.33 -19.71 10.16 84.04 0.85 -18.85 16 20 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 21 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 22 N -0.93 -57.25 13.96 21.66 0.30 -56.95 16 23 Si 0.97 39.28 27.73 68.60 1.90 41.19 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 27 C 0.07 1.57 6.56 86.53 0.57 2.14 16 28 C -0.10 -1.48 2.51 -10.80 -0.03 -1.51 16 29 C -0.14 -3.02 8.81 71.98 0.63 -2.39 16 30 C -0.14 -1.23 8.71 71.98 0.63 -0.60 16 31 H 0.07 0.45 7.33 -2.39 -0.02 0.44 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 0.48 8.06 -2.39 -0.02 0.47 16 34 H 0.10 0.70 5.38 -2.39 -0.01 0.69 16 35 H 0.11 0.56 8.02 -2.39 -0.02 0.54 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.08 0.50 8.11 -2.38 -0.02 0.48 16 39 H 0.34 11.62 7.94 -89.70 -0.71 10.91 16 40 H 0.12 2.95 8.07 -2.39 -0.02 2.93 16 41 H 0.07 1.85 8.11 -2.39 -0.02 1.83 16 42 H 0.39 15.38 5.76 -92.71 -0.53 14.85 16 43 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.04 1.27 7.50 -2.39 -0.02 1.25 16 46 H 0.10 1.18 5.89 -2.39 -0.01 1.16 16 47 H 0.05 1.28 7.54 -2.39 -0.02 1.26 16 48 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.02 0.58 7.39 -2.39 -0.02 0.56 16 50 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 51 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 52 H 0.06 0.58 7.34 -2.39 -0.02 0.57 16 Total: -1.00 -90.01 412.13 1.22 -88.79 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -0.38 Total: 39.78 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 7.40 Total: 19.58 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -6.80 Total: -123.88 kcal Atomic # 8 Polarization: -64.54 SS G_CDS: -0.91 Total: -65.45 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 1.90 Total: 41.19 kcal Total: -90.01 1.22 -88.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215465433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.583 kcal (2) G-P(sol) polarization free energy of solvation -90.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds