Wall clock time and date at job start Wed Apr 1 2020 01:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 113.99866 * 2 1 4 4 C 1.50703 * 109.47183 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99975 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00307 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99963 * 180.02562 * 6 4 3 8 8 H 1.09006 * 109.46976 * 324.99233 * 7 6 4 9 9 C 1.50698 * 109.46528 * 204.99804 * 7 6 4 10 10 O 1.21280 * 120.00506 * 323.06166 * 9 7 6 11 11 N 1.34788 * 119.99730 * 143.06712 * 9 7 6 12 12 C 1.47421 * 125.64758 * 174.74021 * 11 9 7 13 13 C 1.54904 * 104.83297 * 204.16626 * 12 11 9 14 14 H 1.08998 * 111.00840 * 81.06380 * 13 12 11 15 15 C 1.52997 * 111.00528 * 204.91775 * 13 12 11 16 16 C 1.55160 * 101.58115 * 322.99293 * 13 12 11 17 17 H 1.09001 * 110.87018 * 277.06735 * 16 13 12 18 18 N 1.46503 * 110.72079 * 153.86653 * 16 13 12 19 19 C 1.36938 * 119.99919 * 160.02036 * 18 16 13 20 20 H 1.08004 * 119.99700 * 0.02562 * 19 18 16 21 21 C 1.38803 * 119.99885 * 179.97438 * 19 18 16 22 22 N 1.31623 * 120.00096 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99920 * 180.27576 * 21 19 18 24 24 H 1.48491 * 109.47353 * 269.72976 * 23 21 19 25 25 H 1.48501 * 109.46944 * 29.73120 * 23 21 19 26 26 H 1.48501 * 109.47004 * 149.72869 * 23 21 19 27 27 C 1.47017 * 125.64871 * 354.78664 * 11 9 7 28 28 C 1.52992 * 109.47354 * 84.99868 * 7 6 4 29 29 C 1.52998 * 109.47271 * 182.07584 * 28 7 6 30 30 C 1.53004 * 109.47223 * 302.07626 * 28 7 6 31 31 H 1.09000 * 109.47726 * 300.00026 * 1 2 3 32 32 H 1.09004 * 109.47325 * 60.00089 * 1 2 3 33 33 H 1.09003 * 109.47369 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.47231 * 60.00353 * 3 2 1 35 35 H 1.08991 * 109.47726 * 299.99917 * 3 2 1 36 36 H 0.97000 * 119.99474 * 359.97438 * 6 4 3 37 37 H 1.09008 * 110.36877 * 323.00443 * 12 11 9 38 38 H 1.09001 * 110.36985 * 85.21564 * 12 11 9 39 39 H 1.09002 * 109.47243 * 172.19336 * 15 13 12 40 40 H 1.08997 * 109.47461 * 292.19433 * 15 13 12 41 41 H 1.09002 * 109.47552 * 52.19710 * 15 13 12 42 42 H 0.96993 * 119.99798 * 340.01886 * 18 16 13 43 43 H 0.97005 * 119.99645 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.88430 * 59.48147 * 27 11 9 45 45 H 1.09011 * 110.00947 * 298.39520 * 27 11 9 46 46 H 1.09001 * 109.47398 * 62.07632 * 28 7 6 47 47 H 1.09005 * 109.46787 * 54.99602 * 29 28 7 48 48 H 1.08998 * 109.47337 * 174.99208 * 29 28 7 49 49 H 1.09002 * 109.47093 * 294.99694 * 29 28 7 50 50 H 1.09003 * 109.47038 * 59.99929 * 30 28 7 51 51 H 1.08999 * 109.47509 * 180.02562 * 30 28 7 52 52 H 1.09001 * 109.46939 * 300.00287 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0006 6 7 4.2764 2.2969 0.0013 7 6 5.7369 2.1812 0.0013 8 1 6.0325 1.3130 0.5905 9 6 6.3391 3.4249 0.6024 10 8 5.8337 4.5068 0.3908 11 7 7.4398 3.3349 1.3753 12 6 8.1929 4.4726 1.9337 13 6 9.6206 3.9226 2.1756 14 1 10.2010 3.9228 1.2530 15 6 10.3357 4.7161 3.2709 16 6 9.3212 2.4739 2.6438 17 1 9.0834 2.4508 3.7073 18 7 10.4511 1.5895 2.3479 19 6 10.5846 0.4021 3.0167 20 1 9.8566 0.1174 3.7621 21 6 11.6548 -0.4360 2.7360 22 7 12.5415 -0.0893 1.8272 23 14 11.8327 -2.0595 3.6429 24 1 12.6434 -1.8547 4.8700 25 1 10.4883 -2.5675 4.0168 26 1 12.5077 -3.0468 2.7627 27 6 8.0886 2.0860 1.8002 28 6 6.2355 2.0163 -1.4356 29 6 7.7557 1.8436 -1.4314 30 6 5.5838 0.7824 -2.0632 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6885 1.8464 0.8901 35 1 1.6886 1.8464 -0.8899 36 1 3.8592 3.1726 0.0009 37 1 8.2196 5.2966 1.2205 38 1 7.7461 4.7991 2.8728 39 1 11.2779 4.2268 3.5178 40 1 10.5336 5.7277 2.9165 41 1 9.7052 4.7592 4.1590 42 1 11.1045 1.8451 1.6782 43 1 13.2897 -0.6749 1.6313 44 1 8.4022 1.5151 0.9262 45 1 7.3992 1.4934 2.4019 46 1 5.9720 2.9008 -2.0155 47 1 8.0250 1.0123 -0.7797 48 1 8.1008 1.6375 -2.4445 49 1 8.2242 2.7577 -1.0667 50 1 4.5008 0.9054 -2.0663 51 1 5.9394 0.6646 -3.0868 52 1 5.8473 -0.1022 -1.4834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215821278.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:35 Heat of formation + Delta-G solvation = -102.954433 kcal Electronic energy + Delta-G solvation = -31740.397942 eV Core-core repulsion = 27547.545333 eV Total energy + Delta-G solvation = -4192.852609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80792 -39.58631 -38.03683 -37.48561 -35.86370 -34.16444 -33.52814 -32.51326 -30.75825 -29.59702 -27.94431 -27.57568 -26.85826 -26.18508 -25.19893 -23.97410 -21.68858 -21.01405 -20.56330 -19.98738 -19.23214 -17.78412 -17.18347 -17.04658 -16.66903 -16.60559 -16.12641 -15.78582 -15.36568 -15.16630 -14.75883 -14.56639 -14.07286 -13.63295 -13.59705 -13.40383 -13.28099 -13.17265 -12.85920 -12.70786 -12.52281 -12.44552 -12.39780 -12.13091 -11.96507 -11.79176 -11.62852 -11.42281 -11.17422 -11.04879 -10.98720 -10.85079 -10.69335 -10.58772 -10.27415 -10.13820 -9.99254 -9.90209 -9.87213 -9.73501 -9.14658 -9.02001 -8.42877 -7.12007 -5.86756 -3.17830 2.31394 2.45602 2.69398 3.18597 3.39734 3.46449 3.47174 3.81397 4.39889 4.49789 4.55072 4.73435 4.76751 4.84462 4.92382 4.94350 4.97643 5.02398 5.09321 5.16422 5.24600 5.32776 5.39942 5.52741 5.58194 5.63943 5.69904 5.75767 5.79563 5.84664 5.92654 5.95256 6.01147 6.10030 6.14121 6.16410 6.21793 6.31398 6.37064 6.43568 6.46116 6.52877 6.57554 6.63688 6.83288 7.31542 7.61034 7.65204 8.05998 8.14372 8.30495 9.43017 9.95386 10.30386 11.34892 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010225 B = 0.003234 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.639842 B = 8654.897024 C =10078.586156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.045 3.955 4 C 0.514 3.486 5 O -0.506 6.506 6 N -0.714 5.714 7 C 0.137 3.863 8 H 0.111 0.889 9 C 0.529 3.471 10 O -0.553 6.553 11 N -0.603 5.603 12 C 0.114 3.886 13 C -0.113 4.113 14 H 0.085 0.915 15 C -0.134 4.134 16 C 0.178 3.822 17 H 0.066 0.934 18 N -0.710 5.710 19 C -0.249 4.249 20 H 0.072 0.928 21 C -0.006 4.006 22 N -0.928 5.928 23 Si 0.906 3.094 24 H -0.289 1.289 25 H -0.280 1.280 26 H -0.291 1.291 27 C 0.060 3.940 28 C -0.094 4.094 29 C -0.153 4.153 30 C -0.137 4.137 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.407 0.593 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.051 0.949 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.906 8.552 -4.620 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C -0.035 4.035 4 C 0.299 3.701 5 O -0.380 6.380 6 N -0.370 5.370 7 C 0.029 3.971 8 H 0.129 0.871 9 C 0.316 3.684 10 O -0.432 6.432 11 N -0.335 5.335 12 C -0.009 4.009 13 C -0.133 4.133 14 H 0.103 0.897 15 C -0.191 4.191 16 C 0.066 3.934 17 H 0.084 0.916 18 N -0.350 5.350 19 C -0.380 4.380 20 H 0.090 0.910 21 C -0.203 4.203 22 N -0.575 5.575 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.206 1.206 26 H -0.217 1.217 27 C -0.066 4.066 28 C -0.114 4.114 29 C -0.210 4.210 30 C -0.194 4.194 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.243 0.757 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.069 0.931 51 H 0.070 0.930 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.729 7.945 -4.649 20.869 hybrid contribution -0.113 -0.204 0.236 0.332 sum -18.842 7.741 -4.413 20.842 Atomic orbital electron populations 1.22843 0.80359 1.03371 1.00094 1.88030 1.19763 1.25023 1.95416 1.22202 0.91497 0.87102 1.02744 1.20158 0.88593 0.84557 0.76830 1.90782 1.74205 1.26242 1.46760 1.45630 1.05626 1.09452 1.76285 1.20966 0.80242 0.97543 0.98309 0.87137 1.20106 0.80006 0.90249 0.78060 1.90655 1.61430 1.29489 1.61644 1.48496 1.26659 1.09838 1.48514 1.22299 0.91068 0.89141 0.98348 1.22625 0.94116 0.96491 1.00047 0.89711 1.21610 1.01205 0.98902 0.97414 1.21228 0.87367 0.88315 0.96485 0.91588 1.42343 1.25606 1.19977 1.47052 1.19223 1.07439 0.95197 1.16131 0.90994 1.24745 0.97468 0.98940 0.99115 1.69658 1.14914 1.38091 1.34885 0.86213 0.77724 0.83517 0.78874 1.21647 1.20575 1.21696 1.23640 0.96758 0.85338 1.00871 1.21405 0.96706 0.99924 0.93371 1.21966 0.93431 1.02811 1.02815 1.21872 0.99928 0.97512 1.00068 0.93788 0.93827 0.89031 0.90149 0.90157 0.75712 0.90916 0.91496 0.91245 0.93157 0.92835 0.77832 0.93340 0.89721 0.92137 0.90707 0.91148 0.91872 0.92348 0.93131 0.92957 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.36 -4.14 10.24 -55.14 -0.56 -4.70 16 3 C 0.04 0.41 6.42 36.01 0.23 0.64 16 4 C 0.51 6.48 6.19 -10.98 -0.07 6.41 16 5 O -0.51 -8.47 13.62 -14.35 -0.20 -8.66 16 6 N -0.71 -8.43 4.91 -54.93 -0.27 -8.70 16 7 C 0.14 1.90 1.97 -69.09 -0.14 1.76 16 8 H 0.11 1.72 6.38 -51.93 -0.33 1.39 16 9 C 0.53 7.97 5.98 -10.98 -0.07 7.91 16 10 O -0.55 -9.21 16.56 5.56 0.09 -9.12 16 11 N -0.60 -9.08 2.96 -170.52 -0.51 -9.58 16 12 C 0.11 1.59 6.35 -2.53 -0.02 1.57 16 13 C -0.11 -1.67 3.25 -88.47 -0.29 -1.96 16 14 H 0.08 1.33 8.00 -51.93 -0.42 0.91 16 15 C -0.13 -1.78 9.31 37.16 0.35 -1.43 16 16 C 0.18 3.18 3.06 -66.10 -0.20 2.98 16 17 H 0.07 1.20 8.02 -51.93 -0.42 0.78 16 18 N -0.71 -16.08 5.18 -51.65 -0.27 -16.35 16 19 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 20 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.93 -26.62 13.06 55.49 0.72 -25.90 16 23 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.06 0.99 5.50 -3.07 -0.02 0.97 16 28 C -0.09 -1.23 2.67 -90.62 -0.24 -1.48 16 29 C -0.15 -2.11 7.80 37.16 0.29 -1.82 16 30 C -0.14 -1.80 7.70 37.16 0.29 -1.51 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.41 4.09 7.97 -40.82 -0.33 3.76 16 37 H 0.07 1.00 8.09 -51.92 -0.42 0.58 16 38 H 0.07 0.88 7.99 -51.93 -0.41 0.46 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 42 H 0.39 9.41 7.71 -40.82 -0.31 9.10 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.08 1.51 5.26 -51.93 -0.27 1.24 16 45 H 0.06 1.01 8.02 -51.92 -0.42 0.59 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.07 1.07 6.48 -51.93 -0.34 0.73 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.06 0.84 7.20 -51.93 -0.37 0.47 16 50 H 0.05 0.66 5.84 -51.93 -0.30 0.36 16 51 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 52 H 0.07 1.06 7.39 -51.93 -0.38 0.67 16 LS Contribution 410.08 15.07 6.18 6.18 Total: -1.00 -31.83 410.08 -7.76 -39.59 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -8.92 Total: 12.08 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 0.98 Total: 8.53 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.32 Total: -60.52 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.67 Total: -22.48 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.83 -7.76 -39.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215821278.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.360 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds