Wall clock time and date at job start Wed Apr 1 2020 01:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00290 * 2 1 4 4 C 1.52994 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47045 * 54.99994 * 4 3 2 6 6 C 1.52996 * 109.47213 * 295.00083 * 4 3 2 7 7 C 1.53001 * 109.47256 * 174.99600 * 4 3 2 8 8 C 1.50693 * 109.47176 * 184.99919 * 7 4 3 9 9 O 1.21283 * 120.00346 * 0.02562 * 8 7 4 10 10 N 1.34784 * 119.99987 * 180.02562 * 8 7 4 11 11 C 1.47481 * 127.03335 * 0.02562 * 10 8 7 12 12 C 1.53998 * 107.08415 * 154.51448 * 11 10 8 13 13 H 1.09008 * 110.32416 * 120.30112 * 12 11 10 14 14 C 1.52996 * 110.33132 * 242.41482 * 12 11 10 15 15 C 1.54620 * 105.04438 * 1.31124 * 12 11 10 16 16 H 1.09001 * 110.73972 * 263.32816 * 15 12 11 17 17 N 1.46896 * 110.73995 * 140.18244 * 15 12 11 18 18 C 1.46895 * 111.00048 * 155.00126 * 17 15 12 19 19 C 1.50708 * 109.47215 * 180.02562 * 18 17 15 20 20 O 1.21291 * 119.99913 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99953 * 180.02562 * 19 18 17 22 22 C 1.37104 * 119.99950 * 179.97438 * 21 19 18 23 23 H 1.07994 * 119.99790 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99617 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99582 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00321 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47242 * 89.99937 * 26 24 22 28 28 H 1.48506 * 109.46884 * 209.99843 * 26 24 22 29 29 H 1.48504 * 109.47333 * 329.99636 * 26 24 22 30 30 C 1.48118 * 127.03299 * 179.71140 * 10 8 7 31 31 H 1.09004 * 109.46961 * 300.00428 * 1 2 3 32 32 H 1.09004 * 109.47022 * 60.00407 * 1 2 3 33 33 H 1.09003 * 109.47213 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47165 * 59.99552 * 3 2 1 35 35 H 1.09000 * 109.46467 * 299.99918 * 3 2 1 36 36 H 1.08995 * 109.47302 * 59.99793 * 6 4 3 37 37 H 1.09000 * 109.47320 * 179.97438 * 6 4 3 38 38 H 1.09007 * 109.47043 * 299.99913 * 6 4 3 39 39 H 1.09002 * 109.46490 * 65.00293 * 7 4 3 40 40 H 1.09003 * 109.47284 * 305.00576 * 7 4 3 41 41 H 1.08997 * 109.91691 * 273.88587 * 11 10 8 42 42 H 1.09007 * 109.91002 * 34.96364 * 11 10 8 43 43 H 1.09001 * 109.47208 * 58.55049 * 14 12 11 44 44 H 1.09001 * 109.47158 * 178.54321 * 14 12 11 45 45 H 1.08997 * 109.47115 * 298.54956 * 14 12 11 46 46 H 1.00900 * 111.00507 * 31.04449 * 17 15 12 47 47 H 1.08997 * 109.47193 * 299.99413 * 18 17 15 48 48 H 1.09000 * 109.47376 * 60.00352 * 18 17 15 49 49 H 0.97007 * 120.00096 * 359.97438 * 21 19 18 50 50 H 0.97003 * 119.99984 * 179.97438 * 25 24 22 51 51 H 1.09000 * 110.66016 * 337.77172 * 30 10 8 52 52 H 1.09001 * 110.66208 * 100.88448 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5681 -0.8410 6 6 3.9952 0.5369 1.3083 7 6 4.1575 2.5768 -0.1252 8 6 5.6539 2.4492 -0.2480 9 8 6.1721 1.3527 -0.2366 10 7 6.4167 3.5537 -0.3706 11 6 5.9540 4.9537 -0.4019 12 6 7.1233 5.8277 0.0886 13 1 7.4114 6.5422 -0.6826 14 6 6.7357 6.5617 1.3738 15 6 8.2776 4.8363 0.3635 16 1 8.3152 4.5711 1.4201 17 7 9.5617 5.3982 -0.0758 18 6 10.6793 4.8021 0.6681 19 6 11.9770 5.4023 0.1916 20 8 11.9713 6.2435 -0.6822 21 7 13.1438 5.0035 0.7356 22 6 14.3244 5.5491 0.3017 23 1 14.3193 6.2981 -0.4762 24 6 15.5272 5.1384 0.8630 25 7 16.6589 5.6610 0.4468 26 14 15.5359 3.8423 2.2082 27 1 15.6472 2.4940 1.5958 28 1 16.6926 4.0732 3.1105 29 1 14.2750 3.9294 2.9878 30 6 7.8916 3.6100 -0.4951 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 1.6887 1.8464 0.8899 35 1 1.6887 1.8463 -0.8900 36 1 3.5522 -0.4549 1.3979 37 1 5.0818 0.4504 1.3085 38 1 3.6792 1.1534 2.1499 39 1 3.9144 3.1646 0.7600 40 1 3.7611 3.0732 -1.0110 41 1 5.6835 5.2327 -1.4202 42 1 5.0941 5.0753 0.2569 43 1 6.4620 5.8351 2.1388 44 1 7.5810 7.1551 1.7223 45 1 5.8880 7.2178 1.1759 46 1 9.5651 6.4035 0.0107 47 1 10.5557 5.0031 1.7323 48 1 10.6937 3.7251 0.5009 49 1 13.1483 4.3305 1.4342 50 1 17.4986 5.3745 0.8389 51 1 8.3461 2.7034 -0.0957 52 1 8.1843 3.7628 -1.5338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216137594.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:37 Heat of formation + Delta-G solvation = -115.806909 kcal Electronic energy + Delta-G solvation = -29794.784856 eV Core-core repulsion = 25601.374922 eV Total energy + Delta-G solvation = -4193.409934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53002 -38.98425 -38.40548 -37.94051 -35.00166 -34.83725 -33.87190 -32.63323 -31.66149 -29.85844 -28.17047 -27.60789 -26.68491 -26.36981 -25.63208 -24.00639 -22.27954 -20.98966 -20.46256 -19.52771 -19.25864 -18.30501 -17.53465 -16.89467 -16.61472 -16.36752 -15.87263 -15.67164 -15.39963 -15.27878 -15.02711 -14.83117 -14.27899 -14.17468 -13.91531 -13.57494 -13.47142 -13.43556 -13.19661 -13.07748 -12.67107 -12.58681 -12.44316 -12.39536 -12.17659 -12.02934 -11.93974 -11.72111 -11.46654 -11.32840 -11.26926 -11.22060 -11.12361 -11.01861 -10.79342 -10.59646 -10.09405 -9.98346 -9.92996 -9.58045 -8.92765 -8.61317 -8.26168 -8.18176 -6.31849 -3.83382 2.42091 2.62286 3.02500 3.07679 3.15535 3.36283 3.72038 3.98916 4.08261 4.10172 4.29157 4.44157 4.46274 4.56606 4.61061 4.76014 4.80698 4.86676 4.91938 4.97615 4.99355 5.08114 5.10448 5.12622 5.18866 5.19933 5.23504 5.23991 5.38709 5.46026 5.51728 5.55094 5.58441 5.70691 5.74388 5.75726 5.84372 5.84626 5.89145 5.93283 5.98514 6.08380 6.22385 6.73289 7.02674 7.31509 7.48262 7.57072 7.96076 8.13376 8.58527 8.93929 9.41508 9.81036 10.81165 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.001848 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.507857 B =15149.970755 C =16065.621131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.066 3.934 4 C -0.075 4.075 5 H 0.088 0.912 6 C -0.149 4.149 7 C -0.131 4.131 8 C 0.533 3.467 9 O -0.533 6.533 10 N -0.623 5.623 11 C 0.108 3.892 12 C -0.111 4.111 13 H 0.099 0.901 14 C -0.146 4.146 15 C 0.077 3.923 16 H 0.060 0.940 17 N -0.656 5.656 18 C 0.047 3.953 19 C 0.450 3.550 20 O -0.565 6.565 21 N -0.590 5.590 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.879 3.121 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 C 0.113 3.887 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.355 0.645 47 H 0.046 0.954 48 H 0.088 0.912 49 H 0.371 0.629 50 H 0.273 0.727 51 H 0.082 0.918 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.810 -4.998 3.561 33.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.011 4.011 4 C -0.094 4.094 5 H 0.106 0.894 6 C -0.206 4.206 7 C -0.171 4.171 8 C 0.322 3.678 9 O -0.410 6.410 10 N -0.358 5.358 11 C -0.016 4.016 12 C -0.130 4.130 13 H 0.117 0.883 14 C -0.203 4.203 15 C -0.035 4.035 16 H 0.077 0.923 17 N -0.290 5.290 18 C -0.086 4.086 19 C 0.236 3.764 20 O -0.447 6.447 21 N -0.229 5.229 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.195 1.195 28 H -0.202 1.202 29 H -0.195 1.195 30 C -0.009 4.009 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.177 0.823 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.100 0.900 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -32.173 -5.675 2.462 32.763 hybrid contribution -0.097 -0.201 1.955 1.967 sum -32.271 -5.876 4.416 33.097 Atomic orbital electron populations 1.22746 0.81071 1.02823 0.99893 1.87898 1.19551 1.27812 1.95370 1.22588 0.93685 0.84769 1.00043 1.20836 0.92028 0.95223 1.01335 0.89369 1.21889 1.03188 1.00650 0.94909 1.21615 0.92073 0.99109 1.04279 1.20150 0.88797 0.82826 0.75993 1.90709 1.74784 1.25388 1.50109 1.48789 1.08330 1.05958 1.72703 1.22179 0.97269 0.80661 1.01449 1.22300 0.94308 0.97232 0.99165 0.88270 1.21888 1.01895 1.00201 0.96350 1.22610 0.89172 0.94440 0.97250 0.92260 1.60000 0.99604 1.11334 1.58034 1.21792 0.91035 1.00292 0.95486 1.19660 0.84286 0.86446 0.86054 1.90565 1.86591 1.34814 1.32725 1.42210 1.06470 1.38355 1.35860 1.19433 0.81308 1.21954 1.20756 0.86253 1.25035 0.95019 0.97940 0.98087 1.69623 0.97657 1.42464 1.42302 0.86677 0.78338 0.82333 0.82066 1.19536 1.20176 1.19545 1.22451 0.78686 0.98501 1.01311 0.94126 0.94106 0.89593 0.93242 0.93305 0.92084 0.90596 0.93609 0.88792 0.88797 0.91073 0.90691 0.92540 0.91987 0.92046 0.82341 0.93590 0.89383 0.79668 0.91598 0.89990 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.39 10.24 -35.23 -0.36 -3.75 16 3 C 0.07 0.45 5.32 37.15 0.20 0.65 16 4 C -0.08 -0.64 2.27 -90.62 -0.21 -0.84 16 5 H 0.09 0.92 7.96 -51.92 -0.41 0.51 16 6 C -0.15 -1.42 8.83 37.16 0.33 -1.09 16 7 C -0.13 -0.92 4.25 -27.89 -0.12 -1.04 16 8 C 0.53 5.82 7.61 -10.99 -0.08 5.74 16 9 O -0.53 -7.89 14.18 5.56 0.08 -7.81 16 10 N -0.62 -6.25 3.29 -169.99 -0.56 -6.81 16 11 C 0.11 0.76 6.42 -2.98 -0.02 0.74 16 12 C -0.11 -0.89 3.08 -89.25 -0.28 -1.17 16 13 H 0.10 0.84 7.94 -51.92 -0.41 0.42 16 14 C -0.15 -0.99 8.89 37.16 0.33 -0.66 16 15 C 0.08 0.84 2.93 -66.03 -0.19 0.64 16 16 H 0.06 0.65 7.54 -51.93 -0.39 0.26 16 17 N -0.66 -9.34 5.98 -106.21 -0.63 -9.98 16 18 C 0.05 0.75 6.03 -4.97 -0.03 0.72 16 19 C 0.45 10.02 7.82 -10.98 -0.09 9.93 16 20 O -0.56 -14.85 15.78 5.55 0.09 -14.77 16 21 N -0.59 -13.96 5.09 -10.96 -0.06 -14.02 16 22 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 23 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 24 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 25 N -0.88 -25.70 13.96 55.50 0.77 -24.93 16 26 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 29 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 30 C 0.11 1.34 6.75 -2.32 -0.02 1.33 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 37 H 0.08 0.89 5.95 -51.93 -0.31 0.59 16 38 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 39 H 0.09 0.49 7.91 -51.93 -0.41 0.08 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.38 7.08 -51.93 -0.37 0.01 16 43 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.36 5.14 8.03 -39.29 -0.32 4.82 16 47 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 48 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 49 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.08 1.09 7.85 -51.93 -0.41 0.68 16 52 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 417.32 15.07 6.29 6.29 Total: -1.00 -34.79 417.32 -7.54 -42.33 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -9.14 Total: 10.21 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 0.69 Total: 8.51 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.48 Total: -55.73 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.19 Total: -26.33 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.79 -7.54 -42.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216137594.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.473 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds