Wall clock time and date at job start Wed Apr 1 2020 01:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00290 * 2 1 4 4 C 1.52994 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47045 * 54.99994 * 4 3 2 6 6 C 1.52996 * 109.47213 * 295.00083 * 4 3 2 7 7 C 1.53001 * 109.47256 * 174.99600 * 4 3 2 8 8 C 1.50693 * 109.47176 * 184.99919 * 7 4 3 9 9 O 1.21283 * 120.00346 * 0.02562 * 8 7 4 10 10 N 1.34784 * 119.99987 * 180.02562 * 8 7 4 11 11 C 1.47481 * 127.03335 * 0.02562 * 10 8 7 12 12 C 1.53998 * 107.08415 * 154.51448 * 11 10 8 13 13 H 1.09008 * 110.32416 * 120.30112 * 12 11 10 14 14 C 1.52996 * 110.33132 * 242.41482 * 12 11 10 15 15 C 1.54620 * 105.04438 * 1.31124 * 12 11 10 16 16 H 1.09001 * 110.73972 * 263.32816 * 15 12 11 17 17 N 1.46896 * 110.73995 * 140.18244 * 15 12 11 18 18 C 1.46895 * 111.00048 * 155.00126 * 17 15 12 19 19 C 1.50708 * 109.47215 * 180.02562 * 18 17 15 20 20 O 1.21291 * 119.99913 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99953 * 180.02562 * 19 18 17 22 22 C 1.37104 * 119.99950 * 179.97438 * 21 19 18 23 23 H 1.07994 * 119.99790 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99617 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99582 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00321 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47242 * 89.99937 * 26 24 22 28 28 H 1.48506 * 109.46884 * 209.99843 * 26 24 22 29 29 H 1.48504 * 109.47333 * 329.99636 * 26 24 22 30 30 C 1.48118 * 127.03299 * 179.71140 * 10 8 7 31 31 H 1.09004 * 109.46961 * 300.00428 * 1 2 3 32 32 H 1.09004 * 109.47022 * 60.00407 * 1 2 3 33 33 H 1.09003 * 109.47213 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47165 * 59.99552 * 3 2 1 35 35 H 1.09000 * 109.46467 * 299.99918 * 3 2 1 36 36 H 1.08995 * 109.47302 * 59.99793 * 6 4 3 37 37 H 1.09000 * 109.47320 * 179.97438 * 6 4 3 38 38 H 1.09007 * 109.47043 * 299.99913 * 6 4 3 39 39 H 1.09002 * 109.46490 * 65.00293 * 7 4 3 40 40 H 1.09003 * 109.47284 * 305.00576 * 7 4 3 41 41 H 1.08997 * 109.91691 * 273.88587 * 11 10 8 42 42 H 1.09007 * 109.91002 * 34.96364 * 11 10 8 43 43 H 1.09001 * 109.47208 * 58.55049 * 14 12 11 44 44 H 1.09001 * 109.47158 * 178.54321 * 14 12 11 45 45 H 1.08997 * 109.47115 * 298.54956 * 14 12 11 46 46 H 1.00900 * 111.00507 * 31.04449 * 17 15 12 47 47 H 1.08997 * 109.47193 * 299.99413 * 18 17 15 48 48 H 1.09000 * 109.47376 * 60.00352 * 18 17 15 49 49 H 0.97007 * 120.00096 * 359.97438 * 21 19 18 50 50 H 0.97003 * 119.99984 * 179.97438 * 25 24 22 51 51 H 1.09000 * 110.66016 * 337.77172 * 30 10 8 52 52 H 1.09001 * 110.66208 * 100.88448 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5681 -0.8410 6 6 3.9952 0.5369 1.3083 7 6 4.1575 2.5768 -0.1252 8 6 5.6539 2.4492 -0.2480 9 8 6.1721 1.3527 -0.2366 10 7 6.4167 3.5537 -0.3706 11 6 5.9540 4.9537 -0.4019 12 6 7.1233 5.8277 0.0886 13 1 7.4114 6.5422 -0.6826 14 6 6.7357 6.5617 1.3738 15 6 8.2776 4.8363 0.3635 16 1 8.3152 4.5711 1.4201 17 7 9.5617 5.3982 -0.0758 18 6 10.6793 4.8021 0.6681 19 6 11.9770 5.4023 0.1916 20 8 11.9713 6.2435 -0.6822 21 7 13.1438 5.0035 0.7356 22 6 14.3244 5.5491 0.3017 23 1 14.3193 6.2981 -0.4762 24 6 15.5272 5.1384 0.8630 25 7 16.6589 5.6610 0.4468 26 14 15.5359 3.8423 2.2082 27 1 15.6472 2.4940 1.5958 28 1 16.6926 4.0732 3.1105 29 1 14.2750 3.9294 2.9878 30 6 7.8916 3.6100 -0.4951 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 1.6887 1.8464 0.8899 35 1 1.6887 1.8463 -0.8900 36 1 3.5522 -0.4549 1.3979 37 1 5.0818 0.4504 1.3085 38 1 3.6792 1.1534 2.1499 39 1 3.9144 3.1646 0.7600 40 1 3.7611 3.0732 -1.0110 41 1 5.6835 5.2327 -1.4202 42 1 5.0941 5.0753 0.2569 43 1 6.4620 5.8351 2.1388 44 1 7.5810 7.1551 1.7223 45 1 5.8880 7.2178 1.1759 46 1 9.5651 6.4035 0.0107 47 1 10.5557 5.0031 1.7323 48 1 10.6937 3.7251 0.5009 49 1 13.1483 4.3305 1.4342 50 1 17.4986 5.3745 0.8389 51 1 8.3461 2.7034 -0.0957 52 1 8.1843 3.7628 -1.5338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216137594.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:36 Heat of formation + Delta-G solvation = -143.252340 kcal Electronic energy + Delta-G solvation = -29795.974979 eV Core-core repulsion = 25601.374922 eV Total energy + Delta-G solvation = -4194.600057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.33504 -40.33740 -39.45413 -38.74633 -36.25504 -35.64029 -35.58091 -33.77209 -33.38030 -30.73372 -29.09283 -28.19018 -27.67095 -27.22192 -26.28660 -25.58411 -23.18034 -21.68470 -21.36054 -21.15193 -20.35632 -19.97477 -18.32460 -17.80947 -17.45222 -17.13630 -16.92791 -16.88848 -16.62380 -16.24516 -15.98968 -15.71153 -15.60565 -15.09070 -14.91282 -14.85084 -14.52477 -14.39971 -14.12013 -14.06805 -13.98034 -13.71807 -13.55503 -13.14326 -13.04795 -12.99583 -12.88653 -12.74247 -12.42887 -12.42349 -12.13107 -12.00343 -11.95208 -11.93052 -11.82430 -11.64894 -11.56487 -11.52929 -10.78194 -10.56177 -10.45172 -10.25881 -9.74771 -9.38785 -8.42440 -6.03150 1.28908 1.34507 1.42695 1.63679 1.86735 1.93500 2.21495 2.69879 2.90137 3.13900 3.32693 3.41706 3.62514 3.74976 3.88940 3.98525 4.06352 4.11642 4.20459 4.29228 4.32412 4.42062 4.47717 4.49126 4.50322 4.50739 4.54731 4.60017 4.62045 4.71633 4.73398 4.79937 4.89079 4.90253 4.92670 4.95838 5.02738 5.09533 5.13549 5.27287 5.33503 5.39470 5.45669 5.52248 5.89664 6.02340 6.29772 6.34665 6.57924 6.58604 6.86597 7.16964 7.38249 7.93950 8.75023 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.001848 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.507857 B =15149.970755 C =16065.621131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.068 3.932 4 C -0.075 4.075 5 H 0.058 0.942 6 C -0.144 4.144 7 C -0.120 4.120 8 C 0.525 3.475 9 O -0.583 6.583 10 N -0.621 5.621 11 C 0.107 3.893 12 C -0.105 4.105 13 H 0.095 0.905 14 C -0.141 4.141 15 C 0.082 3.918 16 H 0.067 0.933 17 N -0.671 5.671 18 C 0.061 3.939 19 C 0.450 3.550 20 O -0.611 6.611 21 N -0.591 5.591 22 C -0.329 4.329 23 H 0.058 0.942 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.962 3.038 27 H -0.260 1.260 28 H -0.274 1.274 29 H -0.232 1.232 30 C 0.112 3.888 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.082 0.918 46 H 0.354 0.646 47 H 0.079 0.921 48 H 0.105 0.895 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.061 0.939 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.435 -5.259 5.928 37.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.009 4.009 4 C -0.094 4.094 5 H 0.077 0.923 6 C -0.202 4.202 7 C -0.159 4.159 8 C 0.316 3.684 9 O -0.463 6.463 10 N -0.355 5.355 11 C -0.015 4.015 12 C -0.124 4.124 13 H 0.113 0.887 14 C -0.198 4.198 15 C -0.029 4.029 16 H 0.085 0.915 17 N -0.305 5.305 18 C -0.071 4.071 19 C 0.238 3.762 20 O -0.495 6.495 21 N -0.233 5.233 22 C -0.458 4.458 23 H 0.076 0.924 24 C -0.211 4.211 25 N -0.573 5.573 26 Si 0.782 3.218 27 H -0.185 1.185 28 H -0.199 1.199 29 H -0.155 1.155 30 C -0.012 4.012 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.102 0.898 42 H 0.126 0.874 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.175 0.825 47 H 0.096 0.904 48 H 0.123 0.877 49 H 0.224 0.776 50 H 0.089 0.911 51 H 0.080 0.920 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -35.851 -5.911 4.831 36.655 hybrid contribution 1.006 -0.053 1.083 1.479 sum -34.844 -5.964 5.914 35.843 Atomic orbital electron populations 1.22900 0.79549 1.03548 1.00987 1.87858 1.21353 1.29131 1.95632 1.22621 0.92050 0.84445 1.01751 1.20789 0.93637 0.95624 0.99337 0.92338 1.21812 1.01215 1.00649 0.96493 1.21628 0.88663 0.98710 1.06898 1.20933 0.90402 0.82136 0.74918 1.90696 1.75922 1.27361 1.52335 1.48861 1.07357 1.07259 1.72018 1.22403 0.97646 0.78309 1.03118 1.22282 0.93414 0.96728 1.00010 0.88690 1.21863 1.02288 1.00303 0.95392 1.22597 0.88454 0.94705 0.97118 0.91527 1.59937 1.00608 1.11294 1.58621 1.21680 0.87823 1.00532 0.97072 1.20887 0.85862 0.84997 0.84443 1.90543 1.87620 1.36757 1.34600 1.42051 1.05523 1.38997 1.36737 1.19023 0.83993 1.22132 1.20675 0.92432 1.26068 0.93690 1.00453 1.00919 1.69799 0.98724 1.44530 1.44268 0.85406 0.80075 0.78217 0.78095 1.18474 1.19857 1.15519 1.22289 0.80388 0.98094 1.00429 0.92923 0.93026 0.89237 0.91358 0.91571 0.93325 0.93336 0.91802 0.85767 0.86050 0.89759 0.87401 0.92068 0.93018 0.89954 0.82548 0.90363 0.87722 0.77579 0.91137 0.92046 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.42 -6.75 10.24 -148.98 -1.53 -8.27 16 3 C 0.07 0.75 5.32 71.98 0.38 1.13 16 4 C -0.07 -1.15 2.27 -10.80 -0.02 -1.18 16 5 H 0.06 1.24 7.96 -2.38 -0.02 1.22 16 6 C -0.14 -2.67 8.83 71.98 0.64 -2.03 16 7 C -0.12 -1.31 4.25 29.85 0.13 -1.18 16 8 C 0.53 10.72 7.61 87.65 0.67 11.38 16 9 O -0.58 -17.61 14.18 -3.04 -0.04 -17.66 16 10 N -0.62 -11.22 3.29 -810.10 -2.67 -13.89 16 11 C 0.11 1.12 6.42 86.53 0.56 1.67 16 12 C -0.10 -1.40 3.08 -9.91 -0.03 -1.43 16 13 H 0.09 1.39 7.94 -2.38 -0.02 1.37 16 14 C -0.14 -1.39 8.89 71.98 0.64 -0.75 16 15 C 0.08 1.63 2.93 46.01 0.13 1.77 16 16 H 0.07 1.27 7.54 -2.39 -0.02 1.25 16 17 N -0.67 -18.42 5.98 -489.94 -2.93 -21.35 16 18 C 0.06 1.86 6.03 85.56 0.52 2.38 16 19 C 0.45 20.17 7.82 87.66 0.69 20.86 16 20 O -0.61 -33.35 15.78 -3.06 -0.05 -33.40 16 21 N -0.59 -28.02 5.09 -306.98 -1.56 -29.58 16 22 C -0.33 -19.35 10.16 84.04 0.85 -18.49 16 23 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 25 N -0.93 -56.40 13.96 21.66 0.30 -56.10 16 26 Si 0.96 39.28 27.74 68.60 1.90 41.18 16 27 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 29 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 30 C 0.11 2.58 6.75 86.61 0.58 3.17 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.05 0.98 7.82 -2.39 -0.02 0.96 16 37 H 0.05 1.17 5.95 -2.39 -0.01 1.16 16 38 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.12 0.66 7.91 -2.39 -0.02 0.64 16 40 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.11 0.47 7.08 -2.38 -0.02 0.46 16 43 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 44 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.35 9.96 8.03 -89.69 -0.72 9.24 16 47 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 48 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 49 H 0.39 15.39 5.76 -92.70 -0.53 14.86 16 50 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 51 H 0.06 1.65 7.85 -2.39 -0.02 1.63 16 52 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -83.98 417.32 0.47 -83.50 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -0.40 Total: 37.03 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 7.44 Total: 18.55 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -6.86 Total: -120.92 kcal Atomic # 8 Polarization: -57.72 SS G_CDS: -1.62 Total: -59.33 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 1.90 Total: 41.18 kcal Total: -83.98 0.47 -83.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216137594.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.748 kcal (2) G-P(sol) polarization free energy of solvation -83.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds