Wall clock time and date at job start Wed Apr 1 2020 01:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00314 * 2 1 4 4 C 1.52997 * 109.47457 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46832 * 304.99973 * 4 3 2 6 6 C 1.53006 * 109.47127 * 64.99652 * 4 3 2 7 7 C 1.52997 * 109.47232 * 184.99774 * 4 3 2 8 8 C 1.50697 * 109.47050 * 174.99758 * 7 4 3 9 9 O 1.21283 * 120.00379 * 0.02562 * 8 7 4 10 10 N 1.34780 * 120.00119 * 179.97438 * 8 7 4 11 11 C 1.47486 * 127.03178 * 0.03500 * 10 8 7 12 12 C 1.53997 * 107.08314 * 154.51095 * 11 10 8 13 13 H 1.09004 * 110.32928 * 120.29951 * 12 11 10 14 14 C 1.53006 * 110.32750 * 242.41161 * 12 11 10 15 15 C 1.54618 * 105.04941 * 1.30272 * 12 11 10 16 16 H 1.08996 * 110.73934 * 263.33654 * 15 12 11 17 17 N 1.46898 * 110.74212 * 140.18414 * 15 12 11 18 18 C 1.46898 * 111.00087 * 155.00163 * 17 15 12 19 19 C 1.50694 * 109.47243 * 180.02562 * 18 17 15 20 20 O 1.21292 * 120.00014 * 359.97438 * 19 18 17 21 21 N 1.34783 * 120.00254 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00369 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99733 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00067 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00028 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99977 * 180.02562 * 24 22 21 27 27 H 1.48510 * 109.47161 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47539 * 119.99781 * 26 24 22 29 29 H 1.48501 * 109.46920 * 239.99776 * 26 24 22 30 30 C 1.48117 * 127.03555 * 179.70792 * 10 8 7 31 31 H 1.08999 * 109.47446 * 300.00377 * 1 2 3 32 32 H 1.09005 * 109.47036 * 60.00265 * 1 2 3 33 33 H 1.09001 * 109.47293 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47043 * 59.99486 * 3 2 1 35 35 H 1.09002 * 109.46902 * 300.00077 * 3 2 1 36 36 H 1.09000 * 109.47050 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.46801 * 300.00272 * 6 4 3 38 38 H 1.09001 * 109.46998 * 59.99868 * 6 4 3 39 39 H 1.08994 * 109.47065 * 295.00126 * 7 4 3 40 40 H 1.09000 * 109.46818 * 55.00071 * 7 4 3 41 41 H 1.09001 * 109.91143 * 273.87318 * 11 10 8 42 42 H 1.09000 * 109.91261 * 34.95343 * 11 10 8 43 43 H 1.09001 * 109.47073 * 58.54467 * 14 12 11 44 44 H 1.08998 * 109.47404 * 178.55153 * 14 12 11 45 45 H 1.08999 * 109.46796 * 298.54765 * 14 12 11 46 46 H 1.00899 * 111.00203 * 278.95901 * 17 15 12 47 47 H 1.08997 * 109.47167 * 300.00338 * 18 17 15 48 48 H 1.09006 * 109.46848 * 60.00043 * 18 17 15 49 49 H 0.97000 * 119.99537 * 359.97438 * 21 19 18 50 50 H 0.97003 * 119.99580 * 179.97438 * 25 24 22 51 51 H 1.09004 * 110.66201 * 337.77604 * 30 10 8 52 52 H 1.08997 * 110.66057 * 100.88805 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8507 0.5685 0.8427 6 6 3.9963 0.5363 -1.3064 7 6 4.1573 2.5769 0.1263 8 6 5.6537 2.4493 0.2505 9 8 6.1719 1.3528 0.2391 10 7 6.4164 3.5538 0.3732 11 6 5.9536 4.9538 0.4046 12 6 7.0133 5.7634 1.1747 13 1 7.4235 6.5497 0.5409 14 6 6.4038 6.3671 2.4417 15 6 8.1117 4.7393 1.5426 16 1 7.9693 4.3683 2.5575 17 7 9.4473 5.3316 1.3899 18 6 10.4255 4.6536 2.2510 19 6 11.7803 5.2874 2.0680 20 8 11.9177 6.2126 1.2959 21 7 12.8397 4.8256 2.7616 22 6 14.0724 5.4018 2.5948 23 1 14.1947 6.2257 1.9072 24 6 15.1645 4.9253 3.3095 25 7 15.0157 3.9226 4.1457 26 14 16.8440 5.7110 3.0827 27 1 16.7452 6.8133 2.0924 28 1 17.3165 6.2532 4.3819 29 1 17.8056 4.6909 2.5929 30 6 7.8901 3.6095 0.5108 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 5.0828 0.4498 -1.3057 37 1 3.5532 -0.4556 -1.3959 38 1 3.6809 1.1524 -2.1485 39 1 3.9149 3.1643 -0.7592 40 1 3.7603 3.0735 1.0116 41 1 5.8600 5.3367 -0.6116 42 1 4.9921 5.0156 0.9144 43 1 6.0089 5.5692 3.0706 44 1 7.1711 6.9149 2.9886 45 1 5.5971 7.0472 2.1682 46 1 9.7421 5.3149 0.4251 47 1 10.1187 4.7469 3.2927 48 1 10.4779 3.5988 1.9808 49 1 12.7298 4.0854 3.3789 50 1 15.7783 3.5897 4.6443 51 1 8.2772 2.6632 0.8888 52 1 8.3559 3.8640 -0.4412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216137602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:40 Heat of formation + Delta-G solvation = -123.451378 kcal Electronic energy + Delta-G solvation = -29701.746934 eV Core-core repulsion = 25508.005511 eV Total energy + Delta-G solvation = -4193.741423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.52368 -38.93162 -38.29919 -37.84172 -34.96847 -34.75897 -33.80353 -32.58541 -31.22739 -29.76916 -28.11233 -27.58005 -26.57611 -26.17375 -25.54970 -24.06118 -22.50540 -20.92011 -20.51053 -19.41043 -19.13315 -17.90722 -17.51951 -16.77636 -16.63018 -16.38576 -15.98741 -15.69478 -15.40731 -15.10175 -14.79653 -14.51796 -14.22567 -14.13924 -13.85889 -13.65433 -13.49792 -13.33463 -13.12868 -13.08510 -12.56472 -12.52618 -12.34084 -12.16775 -12.10392 -11.92712 -11.66682 -11.53458 -11.41455 -11.26428 -11.18459 -11.11390 -11.03842 -11.01154 -10.83132 -10.34512 -10.22890 -10.07827 -9.92922 -9.52726 -8.96316 -8.47930 -8.10206 -7.96826 -6.42177 -3.83120 2.42300 2.62561 3.16289 3.27029 3.34057 3.37851 3.89262 4.00388 4.16895 4.26451 4.41128 4.46509 4.54829 4.63880 4.68968 4.81770 4.88519 4.93987 4.99513 5.00542 5.03117 5.06990 5.13374 5.15628 5.24610 5.25422 5.28974 5.38078 5.40109 5.51616 5.58616 5.61167 5.68114 5.72602 5.81349 5.85565 5.91065 5.96853 6.00173 6.07438 6.16239 6.23277 6.28380 6.74881 7.14019 7.32087 7.54957 7.55508 7.96075 8.05557 8.60133 9.17232 9.53439 10.04369 10.75519 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.001716 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.290236 B =16309.561668 C =17009.805022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.066 3.934 4 C -0.075 4.075 5 H 0.088 0.912 6 C -0.149 4.149 7 C -0.130 4.130 8 C 0.533 3.467 9 O -0.534 6.534 10 N -0.620 5.620 11 C 0.102 3.898 12 C -0.096 4.096 13 H 0.097 0.903 14 C -0.139 4.139 15 C 0.080 3.920 16 H 0.091 0.909 17 N -0.652 5.652 18 C 0.049 3.951 19 C 0.440 3.560 20 O -0.584 6.584 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 C 0.073 3.927 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.352 0.648 47 H 0.087 0.913 48 H 0.046 0.954 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.084 0.916 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.005 -2.724 -6.308 29.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.011 4.011 4 C -0.094 4.094 5 H 0.106 0.894 6 C -0.206 4.206 7 C -0.170 4.170 8 C 0.322 3.678 9 O -0.411 6.411 10 N -0.354 5.354 11 C -0.021 4.021 12 C -0.116 4.116 13 H 0.115 0.885 14 C -0.197 4.197 15 C -0.032 4.032 16 H 0.109 0.891 17 N -0.284 5.284 18 C -0.084 4.084 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 C -0.051 4.051 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.173 0.827 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.226 0.774 50 H 0.081 0.919 51 H 0.103 0.897 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.535 -2.521 -6.280 29.327 hybrid contribution 0.666 -0.627 -0.092 0.919 sum -27.869 -3.148 -6.372 28.761 Atomic orbital electron populations 1.22744 0.81070 1.02819 0.99898 1.87896 1.19554 1.27815 1.95371 1.22588 0.93665 0.84767 1.00060 1.20838 0.92048 0.95215 1.01330 0.89384 1.21890 1.03161 1.00649 0.94929 1.21611 0.91992 0.99116 1.04318 1.20195 0.88840 0.82823 0.75974 1.90709 1.74808 1.25442 1.50112 1.48735 1.07845 1.06162 1.72707 1.22322 0.98425 0.80748 1.00607 1.22091 0.94067 0.97682 0.97763 0.88510 1.21793 1.00761 1.00498 0.96602 1.22744 0.90021 0.91623 0.98793 0.89107 1.60171 0.99875 1.55094 1.13223 1.21746 0.92315 0.95803 0.98537 1.19767 0.85273 0.86964 0.85412 1.90524 1.84988 1.31192 1.40111 1.41871 1.07452 1.32155 1.38453 1.19755 0.84013 1.15593 1.23564 0.87837 1.25268 1.00101 0.96482 0.96079 1.69622 1.32245 1.25625 1.26703 0.85800 0.81338 0.78993 0.78203 1.19202 1.20741 1.20773 1.23293 0.80621 1.01309 0.99885 0.94098 0.94128 0.89597 0.93301 0.93219 0.90627 0.92081 0.93592 0.88740 0.88771 0.91330 0.90625 0.92965 0.91377 0.92638 0.82741 0.89481 0.93636 0.77442 0.91901 0.89733 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.47 10.24 -35.23 -0.36 -3.83 16 3 C 0.07 0.47 5.32 37.16 0.20 0.67 16 4 C -0.08 -0.66 2.27 -90.62 -0.21 -0.86 16 5 H 0.09 0.94 7.96 -51.93 -0.41 0.53 16 6 C -0.15 -1.45 8.83 37.16 0.33 -1.13 16 7 C -0.13 -0.96 4.25 -27.89 -0.12 -1.08 16 8 C 0.53 5.95 7.61 -10.99 -0.08 5.87 16 9 O -0.53 -8.04 14.17 5.55 0.08 -7.96 16 10 N -0.62 -6.33 3.29 -169.98 -0.56 -6.89 16 11 C 0.10 0.77 6.42 -2.98 -0.02 0.75 16 12 C -0.10 -0.88 3.34 -89.25 -0.30 -1.17 16 13 H 0.10 0.94 8.05 -51.93 -0.42 0.53 16 14 C -0.14 -1.15 8.90 37.16 0.33 -0.82 16 15 C 0.08 0.92 2.93 -66.02 -0.19 0.72 16 16 H 0.09 1.07 7.54 -51.93 -0.39 0.68 16 17 N -0.65 -9.71 5.95 -106.21 -0.63 -10.34 16 18 C 0.05 0.83 6.03 -4.98 -0.03 0.80 16 19 C 0.44 10.21 7.82 -10.99 -0.09 10.13 16 20 O -0.58 -15.55 15.78 5.55 0.09 -15.46 16 21 N -0.56 -14.19 5.29 -10.97 -0.06 -14.24 16 22 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 23 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 26 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 C 0.07 0.85 6.65 -2.31 -0.02 0.83 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.91 5.95 -51.93 -0.31 0.60 16 37 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 38 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.51 7.91 -51.93 -0.41 0.10 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.42 7.08 -51.93 -0.37 0.06 16 43 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.35 5.43 7.91 -39.29 -0.31 5.12 16 47 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.08 1.12 7.85 -51.93 -0.41 0.71 16 52 H 0.07 0.85 7.77 -51.93 -0.40 0.45 16 LS Contribution 420.18 15.07 6.33 6.33 Total: -1.00 -33.51 420.18 -7.90 -41.40 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -9.16 Total: 10.79 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 0.68 Total: 8.01 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.53 Total: -55.30 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.19 Total: -27.25 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.51 -7.90 -41.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216137602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.049 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds