Wall clock time and date at job start Wed Apr 1 2020 01:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99798 * 2 1 4 4 C 1.53006 * 109.46681 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46943 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.46974 * 305.00030 * 5 4 3 7 7 C 1.53004 * 109.47109 * 64.99609 * 5 4 3 8 8 C 1.50699 * 109.47117 * 184.99899 * 5 4 3 9 9 O 1.21278 * 119.99968 * 325.15414 * 8 5 4 10 10 N 1.34777 * 119.99914 * 145.15245 * 8 5 4 11 11 C 1.47489 * 127.03561 * 5.00576 * 10 8 5 12 12 C 1.54005 * 107.08646 * 154.51317 * 11 10 8 13 13 H 1.09004 * 110.32176 * 120.19681 * 12 11 10 14 14 C 1.52994 * 110.32738 * 242.31062 * 12 11 10 15 15 C 1.54616 * 105.03909 * 1.30860 * 12 11 10 16 16 H 1.09000 * 110.73623 * 263.32507 * 15 12 11 17 17 N 1.46904 * 110.73860 * 140.19019 * 15 12 11 18 18 C 1.46898 * 111.00255 * 154.99605 * 17 15 12 19 19 C 1.50696 * 109.47076 * 179.97438 * 18 17 15 20 20 O 1.21301 * 120.00104 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00023 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00093 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99959 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99916 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00138 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 120.00051 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46836 * 60.00000 * 26 24 22 28 28 H 1.48491 * 109.47270 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46746 * 300.00431 * 26 24 22 30 30 C 1.48119 * 127.03410 * 184.68492 * 10 8 5 31 31 H 1.09000 * 109.47744 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47278 * 300.00231 * 1 2 3 33 33 H 1.09000 * 109.47356 * 60.00115 * 1 2 3 34 34 H 1.08998 * 109.46836 * 299.99757 * 3 2 1 35 35 H 1.08994 * 109.47212 * 60.00011 * 3 2 1 36 36 H 1.08998 * 109.47234 * 299.99448 * 4 3 2 37 37 H 1.09001 * 109.47021 * 60.00195 * 4 3 2 38 38 H 1.08997 * 109.46702 * 53.89422 * 7 5 4 39 39 H 1.09000 * 109.47080 * 173.88838 * 7 5 4 40 40 H 1.08995 * 109.47048 * 293.89365 * 7 5 4 41 41 H 1.09003 * 109.91169 * 273.87837 * 11 10 8 42 42 H 1.08999 * 109.91110 * 34.95845 * 11 10 8 43 43 H 1.09008 * 109.47354 * 58.54393 * 14 12 11 44 44 H 1.08996 * 109.47005 * 178.54610 * 14 12 11 45 45 H 1.09004 * 109.47328 * 298.54843 * 14 12 11 46 46 H 1.00899 * 110.99706 * 278.94943 * 17 15 12 47 47 H 1.09003 * 109.46669 * 299.99698 * 18 17 15 48 48 H 1.08994 * 109.47245 * 59.99430 * 18 17 15 49 49 H 0.97002 * 120.00208 * 359.97438 * 21 19 18 50 50 H 0.97007 * 119.99773 * 179.97438 * 25 24 22 51 51 H 1.08993 * 110.65781 * 337.77453 * 30 10 8 52 52 H 1.09002 * 110.65662 * 100.88922 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 1 3.7667 3.1537 -0.8431 7 6 3.8088 3.2966 1.3060 8 6 5.6551 2.4655 -0.1257 9 8 6.2365 1.5385 0.3972 10 7 6.3480 3.3911 -0.8182 11 6 5.8187 4.6268 -1.4251 12 6 6.9893 5.6233 -1.5166 13 1 7.1639 5.9079 -2.5543 14 6 6.6996 6.8629 -0.6681 15 6 8.2112 4.8595 -0.9562 16 1 8.3692 5.1020 0.0946 17 7 9.4157 5.1559 -1.7432 18 6 10.6305 4.9573 -0.9415 19 6 11.8427 5.2696 -1.7805 20 8 11.7079 5.6235 -2.9329 21 7 13.0766 5.1569 -1.2502 22 6 14.1794 5.4406 -2.0136 23 1 14.0594 5.7548 -3.0399 24 6 15.4515 5.3238 -1.4670 25 7 15.5975 4.9409 -0.2184 26 14 16.9542 5.7110 -2.5070 27 1 16.8888 7.1220 -2.9653 28 1 18.1822 5.5108 -1.6965 29 1 16.9860 4.8086 -3.6860 30 6 7.7981 3.3788 -1.1199 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.6885 1.8463 -0.8900 35 1 1.6886 1.8464 0.8899 36 1 3.8574 0.6436 0.8891 37 1 3.8567 0.6439 -0.8909 38 1 4.1034 2.6734 2.1503 39 1 4.3397 4.2473 1.3535 40 1 2.7347 3.4778 1.3455 41 1 5.4326 4.4149 -2.4222 42 1 5.0259 5.0374 -0.7998 43 1 6.5390 6.5647 0.3681 44 1 7.5469 7.5464 -0.7222 45 1 5.8064 7.3609 -1.0453 46 1 9.4433 4.6006 -2.5851 47 1 10.6068 5.6194 -0.0759 48 1 10.6787 3.9216 -0.6054 49 1 13.1844 4.8750 -0.3283 50 1 16.4857 4.8591 0.1630 51 1 8.3335 2.7500 -0.4087 52 1 7.9754 3.0429 -2.1416 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216795257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:02 Heat of formation + Delta-G solvation = -124.543568 kcal Electronic energy + Delta-G solvation = -29792.223013 eV Core-core repulsion = 25598.434229 eV Total energy + Delta-G solvation = -4193.788784 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.59486 -38.85881 -38.27722 -37.84755 -35.20539 -34.71681 -33.78698 -32.56732 -31.22428 -29.97826 -28.88359 -26.80552 -26.67022 -26.37388 -25.02326 -24.03634 -22.64169 -21.50926 -20.51025 -19.34096 -19.06847 -17.90563 -17.66027 -16.85642 -16.49132 -16.44672 -15.99567 -15.61610 -15.39115 -15.07375 -14.82184 -14.50061 -14.33915 -14.14134 -13.81970 -13.66864 -13.50569 -13.40121 -13.36781 -13.09256 -12.69111 -12.35192 -12.33699 -12.23304 -12.14678 -12.00948 -11.71829 -11.64745 -11.52967 -11.35684 -11.31621 -11.18537 -11.10326 -11.00158 -10.82541 -10.44194 -10.21444 -10.12218 -9.89735 -9.50319 -8.97747 -8.47526 -8.09736 -7.96500 -6.41627 -3.82727 2.37904 2.61757 3.20296 3.26233 3.30396 3.35354 3.89632 3.98244 4.12050 4.25344 4.37805 4.42749 4.53785 4.59432 4.70519 4.76925 4.79368 4.91071 4.94046 4.96697 5.01039 5.01918 5.07935 5.15786 5.22456 5.24916 5.25683 5.33263 5.35728 5.39391 5.55555 5.57754 5.61712 5.68162 5.72029 5.78952 5.80789 5.85450 5.93106 5.97738 6.07815 6.16888 6.28429 6.71782 7.14271 7.30928 7.54877 7.55806 7.93782 8.05481 8.60547 9.17368 9.53707 10.04791 10.75870 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024077 B = 0.001725 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.639316 B =16229.652654 C =16789.247717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.062 3.938 4 C -0.103 4.103 5 C -0.102 4.102 6 H 0.091 0.909 7 C -0.144 4.144 8 C 0.538 3.462 9 O -0.537 6.537 10 N -0.618 5.618 11 C 0.102 3.898 12 C -0.096 4.096 13 H 0.097 0.903 14 C -0.139 4.139 15 C 0.080 3.920 16 H 0.091 0.909 17 N -0.652 5.652 18 C 0.049 3.951 19 C 0.440 3.560 20 O -0.584 6.584 21 N -0.562 5.562 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 C 0.072 3.928 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.352 0.648 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.085 0.915 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.727 -2.690 3.242 30.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.015 4.015 4 C -0.141 4.141 5 C -0.123 4.123 6 H 0.109 0.891 7 C -0.201 4.201 8 C 0.326 3.674 9 O -0.413 6.413 10 N -0.353 5.353 11 C -0.022 4.022 12 C -0.115 4.115 13 H 0.115 0.885 14 C -0.196 4.196 15 C -0.032 4.032 16 H 0.109 0.891 17 N -0.284 5.284 18 C -0.084 4.084 19 C 0.225 3.775 20 O -0.469 6.469 21 N -0.199 5.199 22 C -0.431 4.431 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.052 4.052 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.173 0.827 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.103 0.897 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -29.266 -2.540 3.028 29.532 hybrid contribution 0.718 -0.677 0.093 0.991 sum -28.548 -3.217 3.121 28.898 Atomic orbital electron populations 1.22749 0.80916 1.02879 0.99964 1.87892 1.19762 1.27972 1.95414 1.22576 0.93811 0.84761 1.00314 1.21338 0.92637 0.95246 1.04886 1.21163 0.91829 0.98386 1.00946 0.89072 1.21798 1.02056 1.00553 0.95737 1.20194 0.89081 0.80933 0.77188 1.90728 1.71188 1.32894 1.46465 1.48726 1.09840 1.22632 1.54097 1.22337 0.97338 0.84297 0.98195 1.22087 0.92726 0.94650 1.02082 0.88495 1.21789 1.01973 0.97001 0.98871 1.22739 0.90573 0.91346 0.98501 0.89107 1.60175 0.99448 1.61270 1.07460 1.21745 0.90001 0.99927 0.96722 1.19764 0.84052 0.85095 0.88540 1.90525 1.85889 1.52135 1.18310 1.41855 1.04387 1.59290 1.14321 1.19656 0.83450 1.42707 0.97263 0.87948 1.25265 0.99169 0.97207 0.96218 1.69607 1.24495 1.47138 1.12961 0.85914 0.79880 0.79160 0.79237 1.19879 1.20974 1.19911 1.23309 0.81100 0.99239 1.01569 0.89553 0.94040 0.94050 0.93272 0.92856 0.89672 0.90733 0.91392 0.91900 0.91275 0.91345 0.90560 0.92973 0.91364 0.92624 0.82743 0.89480 0.93649 0.77434 0.91796 0.89701 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.53 10.70 -35.23 -0.38 -3.90 16 3 C 0.06 0.43 5.69 37.16 0.21 0.65 16 4 C -0.10 -0.90 4.63 -26.73 -0.12 -1.02 16 5 C -0.10 -0.80 2.20 -91.77 -0.20 -1.00 16 6 H 0.09 0.53 7.21 -51.93 -0.37 0.16 16 7 C -0.14 -0.92 8.78 37.16 0.33 -0.60 16 8 C 0.54 6.28 6.88 -10.99 -0.08 6.21 16 9 O -0.54 -8.53 16.56 5.56 0.09 -8.44 16 10 N -0.62 -6.52 3.29 -169.98 -0.56 -7.08 16 11 C 0.10 0.79 5.94 -2.98 -0.02 0.77 16 12 C -0.10 -0.88 3.33 -89.25 -0.30 -1.18 16 13 H 0.10 0.95 8.05 -51.93 -0.42 0.54 16 14 C -0.14 -1.16 8.90 37.15 0.33 -0.83 16 15 C 0.08 0.93 2.93 -66.03 -0.19 0.74 16 16 H 0.09 1.08 7.54 -51.93 -0.39 0.69 16 17 N -0.65 -9.77 5.95 -106.22 -0.63 -10.40 16 18 C 0.05 0.83 6.03 -4.98 -0.03 0.80 16 19 C 0.44 10.23 7.82 -10.99 -0.09 10.15 16 20 O -0.58 -15.58 15.78 5.54 0.09 -15.50 16 21 N -0.56 -14.20 5.29 -10.96 -0.06 -14.25 16 22 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 25 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 26 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 C 0.07 0.85 6.67 -2.32 -0.02 0.84 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.30 6.71 -51.93 -0.35 -0.05 16 36 H 0.08 0.88 8.02 -51.93 -0.42 0.46 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 40 H 0.07 0.30 6.87 -51.93 -0.36 -0.05 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.45 7.20 -51.93 -0.37 0.08 16 43 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.35 5.46 7.91 -39.29 -0.31 5.15 16 47 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 50 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 51 H 0.08 1.14 7.82 -51.93 -0.41 0.74 16 52 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 LS Contribution 421.69 15.07 6.35 6.35 Total: -1.00 -33.88 421.69 -7.82 -41.69 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -9.12 Total: 10.52 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 0.70 Total: 8.79 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.53 Total: -55.56 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.20 Total: -27.84 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.88 -7.82 -41.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216795257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.850 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds