Wall clock time and date at job start Wed Apr 1 2020 01:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99798 * 2 1 4 4 C 1.53006 * 109.46681 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46943 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.46974 * 305.00030 * 5 4 3 7 7 C 1.53004 * 109.47109 * 64.99609 * 5 4 3 8 8 C 1.50699 * 109.47117 * 184.99899 * 5 4 3 9 9 O 1.21278 * 119.99968 * 325.15414 * 8 5 4 10 10 N 1.34777 * 119.99914 * 145.15245 * 8 5 4 11 11 C 1.47489 * 127.03561 * 5.00576 * 10 8 5 12 12 C 1.54005 * 107.08646 * 154.51317 * 11 10 8 13 13 H 1.09004 * 110.32176 * 120.19681 * 12 11 10 14 14 C 1.52994 * 110.32738 * 242.31062 * 12 11 10 15 15 C 1.54616 * 105.03909 * 1.30860 * 12 11 10 16 16 H 1.09000 * 110.73623 * 263.32507 * 15 12 11 17 17 N 1.46904 * 110.73860 * 140.19019 * 15 12 11 18 18 C 1.46898 * 111.00255 * 154.99605 * 17 15 12 19 19 C 1.50696 * 109.47076 * 179.97438 * 18 17 15 20 20 O 1.21301 * 120.00104 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00023 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00093 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99959 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99916 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00138 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 120.00051 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46836 * 60.00000 * 26 24 22 28 28 H 1.48491 * 109.47270 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46746 * 300.00431 * 26 24 22 30 30 C 1.48119 * 127.03410 * 184.68492 * 10 8 5 31 31 H 1.09000 * 109.47744 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47278 * 300.00231 * 1 2 3 33 33 H 1.09000 * 109.47356 * 60.00115 * 1 2 3 34 34 H 1.08998 * 109.46836 * 299.99757 * 3 2 1 35 35 H 1.08994 * 109.47212 * 60.00011 * 3 2 1 36 36 H 1.08998 * 109.47234 * 299.99448 * 4 3 2 37 37 H 1.09001 * 109.47021 * 60.00195 * 4 3 2 38 38 H 1.08997 * 109.46702 * 53.89422 * 7 5 4 39 39 H 1.09000 * 109.47080 * 173.88838 * 7 5 4 40 40 H 1.08995 * 109.47048 * 293.89365 * 7 5 4 41 41 H 1.09003 * 109.91169 * 273.87837 * 11 10 8 42 42 H 1.08999 * 109.91110 * 34.95845 * 11 10 8 43 43 H 1.09008 * 109.47354 * 58.54393 * 14 12 11 44 44 H 1.08996 * 109.47005 * 178.54610 * 14 12 11 45 45 H 1.09004 * 109.47328 * 298.54843 * 14 12 11 46 46 H 1.00899 * 110.99706 * 278.94943 * 17 15 12 47 47 H 1.09003 * 109.46669 * 299.99698 * 18 17 15 48 48 H 1.08994 * 109.47245 * 59.99430 * 18 17 15 49 49 H 0.97002 * 120.00208 * 359.97438 * 21 19 18 50 50 H 0.97007 * 119.99773 * 179.97438 * 25 24 22 51 51 H 1.08993 * 110.65781 * 337.77453 * 30 10 8 52 52 H 1.09002 * 110.65662 * 100.88922 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 1 3.7667 3.1537 -0.8431 7 6 3.8088 3.2966 1.3060 8 6 5.6551 2.4655 -0.1257 9 8 6.2365 1.5385 0.3972 10 7 6.3480 3.3911 -0.8182 11 6 5.8187 4.6268 -1.4251 12 6 6.9893 5.6233 -1.5166 13 1 7.1639 5.9079 -2.5543 14 6 6.6996 6.8629 -0.6681 15 6 8.2112 4.8595 -0.9562 16 1 8.3692 5.1020 0.0946 17 7 9.4157 5.1559 -1.7432 18 6 10.6305 4.9573 -0.9415 19 6 11.8427 5.2696 -1.7805 20 8 11.7079 5.6235 -2.9329 21 7 13.0766 5.1569 -1.2502 22 6 14.1794 5.4406 -2.0136 23 1 14.0594 5.7548 -3.0399 24 6 15.4515 5.3238 -1.4670 25 7 15.5975 4.9409 -0.2184 26 14 16.9542 5.7110 -2.5070 27 1 16.8888 7.1220 -2.9653 28 1 18.1822 5.5108 -1.6965 29 1 16.9860 4.8086 -3.6860 30 6 7.7981 3.3788 -1.1199 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.6885 1.8463 -0.8900 35 1 1.6886 1.8464 0.8899 36 1 3.8574 0.6436 0.8891 37 1 3.8567 0.6439 -0.8909 38 1 4.1034 2.6734 2.1503 39 1 4.3397 4.2473 1.3535 40 1 2.7347 3.4778 1.3455 41 1 5.4326 4.4149 -2.4222 42 1 5.0259 5.0374 -0.7998 43 1 6.5390 6.5647 0.3681 44 1 7.5469 7.5464 -0.7222 45 1 5.8064 7.3609 -1.0453 46 1 9.4433 4.6006 -2.5851 47 1 10.6068 5.6194 -0.0759 48 1 10.6787 3.9216 -0.6054 49 1 13.1844 4.8750 -0.3283 50 1 16.4857 4.8591 0.1630 51 1 8.3335 2.7500 -0.4087 52 1 7.9754 3.0429 -2.1416 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216795257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:02 Heat of formation + Delta-G solvation = -150.100124 kcal Electronic energy + Delta-G solvation = -29793.331229 eV Core-core repulsion = 25598.434229 eV Total energy + Delta-G solvation = -4194.896999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.47052 -40.21900 -39.37252 -38.76371 -36.22786 -35.90417 -35.48899 -33.45483 -33.22705 -30.72266 -29.81981 -27.86865 -27.36266 -27.23625 -26.13807 -25.29149 -23.58589 -22.20758 -21.51667 -20.94988 -19.99813 -19.85146 -18.49792 -17.77143 -17.50732 -17.12614 -17.01836 -16.95004 -16.43508 -16.19020 -15.98111 -15.78516 -15.57075 -15.27324 -14.96204 -14.63768 -14.54458 -14.23129 -14.16316 -13.94095 -13.93388 -13.50538 -13.42102 -13.25597 -13.00428 -12.97612 -12.84309 -12.77435 -12.61218 -12.43806 -12.24582 -12.13409 -12.01514 -11.98301 -11.91380 -11.83543 -11.63767 -11.50427 -10.85367 -10.55987 -10.35702 -10.02778 -9.87441 -9.32197 -8.47007 -5.96218 1.39740 1.41641 1.50604 1.52753 1.79818 2.03910 2.28784 2.80409 2.90924 3.20005 3.32750 3.47948 3.63132 3.73390 3.82886 3.91978 4.00200 4.21147 4.21857 4.23588 4.29916 4.31559 4.37730 4.42194 4.47399 4.52202 4.55410 4.56852 4.57387 4.68617 4.75157 4.80046 4.84188 4.87187 4.88488 4.91281 4.96551 5.00824 5.16525 5.22283 5.28724 5.34606 5.40224 5.47961 5.87739 6.06899 6.25852 6.31773 6.48430 6.58522 7.05874 7.11363 7.54824 8.09449 8.70048 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024077 B = 0.001725 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.639316 B =16229.652654 C =16789.247717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.064 3.936 4 C -0.101 4.101 5 C -0.091 4.091 6 H 0.123 0.877 7 C -0.141 4.141 8 C 0.530 3.470 9 O -0.590 6.590 10 N -0.617 5.617 11 C 0.103 3.897 12 C -0.090 4.090 13 H 0.093 0.907 14 C -0.135 4.135 15 C 0.084 3.916 16 H 0.090 0.910 17 N -0.658 5.658 18 C 0.063 3.937 19 C 0.439 3.561 20 O -0.620 6.620 21 N -0.573 5.573 22 C -0.336 4.336 23 H 0.081 0.919 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.272 1.272 30 C 0.073 3.927 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.348 0.652 47 H 0.104 0.896 48 H 0.060 0.940 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.061 0.939 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.076 -1.361 3.214 32.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.012 4.012 4 C -0.139 4.139 5 C -0.112 4.112 6 H 0.141 0.859 7 C -0.199 4.199 8 C 0.320 3.680 9 O -0.470 6.470 10 N -0.350 5.350 11 C -0.019 4.019 12 C -0.110 4.110 13 H 0.111 0.889 14 C -0.192 4.192 15 C -0.027 4.027 16 H 0.108 0.892 17 N -0.289 5.289 18 C -0.069 4.069 19 C 0.226 3.774 20 O -0.507 6.507 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.099 0.901 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.197 1.197 30 C -0.053 4.053 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.124 0.876 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.098 0.902 46 H 0.168 0.832 47 H 0.122 0.878 48 H 0.078 0.922 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.080 0.920 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -31.651 -1.187 3.011 31.816 hybrid contribution 1.400 -1.111 0.091 1.789 sum -30.252 -2.297 3.102 30.497 Atomic orbital electron populations 1.22921 0.79265 1.03685 1.01151 1.87846 1.21706 1.29305 1.95688 1.22616 0.92063 0.84445 1.02066 1.21275 0.94430 0.95449 1.02729 1.21184 0.88596 0.98366 1.03071 0.85920 1.21823 1.03974 1.00131 0.93958 1.20998 0.90693 0.80116 0.76185 1.90702 1.72500 1.35108 1.48737 1.48818 1.09175 1.23396 1.53580 1.22535 0.97172 0.82459 0.99732 1.22061 0.91865 0.95216 1.01855 0.88896 1.21765 1.02224 0.96119 0.99141 1.22769 0.90115 0.91665 0.98149 0.89191 1.60221 0.99677 1.61530 1.07521 1.21587 0.88185 1.01067 0.96064 1.20784 0.85007 0.83046 0.88544 1.90491 1.86635 1.53320 1.20249 1.41937 1.04742 1.59985 1.14344 1.19659 0.85116 1.44748 0.97019 0.90121 1.26058 1.01365 0.96438 0.97388 1.69675 1.25420 1.47103 1.13941 0.84977 0.76610 0.78891 0.77789 1.19574 1.19570 1.19695 1.23172 0.82283 0.98911 1.00900 0.89126 0.92828 0.92793 0.91242 0.91133 0.92308 0.92565 0.93264 0.91141 0.88402 0.89407 0.87602 0.92399 0.93342 0.90234 0.83237 0.87763 0.92169 0.77070 0.91312 0.92028 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.43 -7.21 10.70 -148.98 -1.59 -8.80 16 3 C 0.06 0.76 5.69 71.98 0.41 1.17 16 4 C -0.10 -1.69 4.63 30.60 0.14 -1.55 16 5 C -0.09 -1.24 2.20 -11.54 -0.03 -1.26 16 6 H 0.12 0.91 7.21 -2.39 -0.02 0.89 16 7 C -0.14 -1.43 8.78 71.98 0.63 -0.80 16 8 C 0.53 12.05 6.88 87.66 0.60 12.66 16 9 O -0.59 -19.53 16.56 -3.02 -0.05 -19.58 16 10 N -0.62 -12.13 3.29 -810.09 -2.67 -14.80 16 11 C 0.10 1.25 5.94 86.53 0.51 1.76 16 12 C -0.09 -1.45 3.33 -9.91 -0.03 -1.48 16 13 H 0.09 1.63 8.05 -2.38 -0.02 1.61 16 14 C -0.14 -1.87 8.90 71.98 0.64 -1.23 16 15 C 0.08 1.87 2.93 46.01 0.13 2.01 16 16 H 0.09 2.04 7.54 -2.39 -0.02 2.02 16 17 N -0.66 -19.51 5.95 -489.96 -2.92 -22.43 16 18 C 0.06 2.16 6.03 85.56 0.52 2.68 16 19 C 0.44 20.80 7.82 87.66 0.69 21.49 16 20 O -0.62 -33.94 15.78 -3.10 -0.05 -33.99 16 21 N -0.57 -29.64 5.29 -306.99 -1.62 -31.26 16 22 C -0.34 -19.19 9.68 84.04 0.81 -18.37 16 23 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 25 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 26 Si 0.99 43.15 29.55 68.60 2.03 45.17 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 29 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 30 C 0.07 1.70 6.67 86.61 0.58 2.28 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.35 8.14 -2.39 -0.02 0.34 16 33 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.58 6.71 -2.39 -0.02 0.57 16 36 H 0.06 1.28 8.02 -2.39 -0.02 1.26 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16 40 H 0.10 0.45 6.87 -2.39 -0.02 0.43 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.72 7.20 -2.39 -0.02 0.71 16 43 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.35 10.84 7.91 -89.69 -0.71 10.13 16 47 H 0.10 3.23 8.08 -2.39 -0.02 3.21 16 48 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 50 H 0.28 14.22 8.31 -92.70 -0.77 13.44 16 51 H 0.06 1.73 7.82 -2.39 -0.02 1.71 16 52 H 0.08 1.75 7.77 -2.39 -0.02 1.73 16 Total: -1.00 -76.75 421.69 0.21 -76.54 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: -0.52 Total: 38.46 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 7.33 Total: 20.61 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -6.92 Total: -118.41 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -1.69 Total: -62.37 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -76.75 0.21 -76.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216795257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.562 kcal (2) G-P(sol) polarization free energy of solvation -76.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds