Wall clock time and date at job start Wed Apr 1 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47129 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47177 * 55.00675 * 5 4 3 7 7 C 1.52993 * 109.47237 * 295.00065 * 5 4 3 8 8 C 1.50710 * 109.46975 * 174.99999 * 5 4 3 9 9 O 1.21272 * 120.00264 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99450 * 180.02562 * 8 5 4 11 11 C 1.47486 * 127.03845 * 0.02562 * 10 8 5 12 12 C 1.54006 * 107.08333 * 154.52182 * 11 10 8 13 13 H 1.08990 * 110.32583 * 120.19828 * 12 11 10 14 14 C 1.53004 * 110.32445 * 242.31262 * 12 11 10 15 15 C 1.54620 * 105.04338 * 1.30131 * 12 11 10 16 16 H 1.08996 * 110.74025 * 263.51238 * 15 12 11 17 17 N 1.46908 * 110.73376 * 140.19007 * 15 12 11 18 18 C 1.46903 * 110.99701 * 155.00304 * 17 15 12 19 19 C 1.50702 * 109.46735 * 179.97438 * 18 17 15 20 20 O 1.21287 * 119.99846 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99495 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99619 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00162 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99717 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99757 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 120.00382 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.46825 * 89.99385 * 26 24 22 28 28 H 1.48494 * 109.47292 * 209.99663 * 26 24 22 29 29 H 1.48498 * 109.46766 * 330.00088 * 26 24 22 30 30 C 1.48124 * 127.02865 * 179.71167 * 10 8 5 31 31 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 32 32 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 33 33 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 35 35 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 36 36 H 1.09002 * 109.47184 * 300.00269 * 4 3 2 37 37 H 1.09003 * 109.47090 * 59.99900 * 4 3 2 38 38 H 1.08999 * 109.47223 * 299.99745 * 7 5 4 39 39 H 1.08994 * 109.47270 * 60.00321 * 7 5 4 40 40 H 1.09004 * 109.47219 * 179.97438 * 7 5 4 41 41 H 1.08997 * 109.91037 * 273.88035 * 11 10 8 42 42 H 1.08993 * 109.90847 * 34.96653 * 11 10 8 43 43 H 1.08997 * 109.47344 * 58.54195 * 14 12 11 44 44 H 1.08992 * 109.47213 * 178.54413 * 14 12 11 45 45 H 1.09006 * 109.46864 * 298.54925 * 14 12 11 46 46 H 1.00903 * 110.99503 * 278.95441 * 17 15 12 47 47 H 1.09002 * 109.46862 * 299.99856 * 18 17 15 48 48 H 1.08994 * 109.47157 * 59.99619 * 18 17 15 49 49 H 0.96994 * 120.00061 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99805 * 180.02562 * 25 24 22 51 51 H 1.09002 * 110.65699 * 337.76126 * 30 10 8 52 52 H 1.08994 * 110.66365 * 100.88180 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 1 3.7668 3.1537 0.8432 7 6 3.8089 3.2965 -1.3059 8 6 5.6552 2.4653 0.1258 9 8 6.1735 1.3719 0.2056 10 7 6.4182 3.5761 0.1484 11 6 5.9552 4.9738 0.0629 12 6 7.0200 5.8461 0.7536 13 1 7.4268 6.5738 0.0516 14 6 6.4183 6.5582 1.9669 15 6 8.1212 4.8569 1.2003 16 1 7.9840 4.5718 2.2433 17 7 9.4556 5.4336 0.9883 18 6 10.4398 4.8314 1.8976 19 6 11.7934 5.4462 1.6509 20 8 11.9253 6.3013 0.8010 21 7 12.8574 5.0456 2.3748 22 6 14.0888 5.6052 2.1508 23 1 14.2061 6.3672 1.3946 24 6 15.1856 5.1926 2.8974 25 7 16.3659 5.7286 2.6823 26 14 14.9825 3.8750 4.2060 27 1 15.2051 2.5375 3.6003 28 1 15.9717 4.0980 5.2907 29 1 13.6091 3.9420 4.7668 30 6 7.8929 3.6430 0.2706 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6887 1.8463 -0.8899 35 1 1.6887 1.8463 0.8900 36 1 3.8568 0.6438 0.8908 37 1 3.8575 0.6435 -0.8891 38 1 4.2000 2.7251 -2.1477 39 1 2.7260 3.3811 -1.3960 40 1 4.2520 4.2924 -1.3053 41 1 5.8546 5.2683 -0.9817 42 1 4.9973 5.0793 0.5721 43 1 6.0267 5.8184 2.6650 44 1 7.1892 7.1505 2.4597 45 1 5.6103 7.2128 1.6401 46 1 9.7437 5.3343 0.0264 47 1 10.1401 5.0137 2.9296 48 1 10.4906 3.7575 1.7183 49 1 12.7517 4.3620 3.0547 50 1 17.1317 5.4403 3.2033 51 1 8.2827 2.7324 0.7256 52 1 8.3521 3.8149 -0.7028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216795258.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:06 Heat of formation + Delta-G solvation = -114.972610 kcal Electronic energy + Delta-G solvation = -29897.053176 eV Core-core repulsion = 25703.679420 eV Total energy + Delta-G solvation = -4193.373756 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.69641 -38.92714 -38.36815 -37.95041 -35.34108 -34.77980 -33.85859 -32.64171 -31.66951 -30.14666 -28.78941 -26.93687 -26.71133 -26.41198 -25.10294 -23.93483 -22.66105 -21.48570 -20.57350 -19.46997 -19.29787 -18.35687 -17.57395 -16.86900 -16.66024 -16.46237 -16.03267 -15.60995 -15.47281 -15.18034 -14.96652 -14.79294 -14.32043 -14.22837 -13.77764 -13.65847 -13.51143 -13.36752 -13.23529 -13.11228 -12.91561 -12.55266 -12.38071 -12.29897 -12.18821 -12.09651 -12.01253 -11.79363 -11.71700 -11.37889 -11.33653 -11.25763 -11.14088 -11.12327 -10.85966 -10.59793 -10.11933 -9.98497 -9.96917 -9.58359 -9.03769 -8.61238 -8.22702 -8.17149 -6.32058 -3.83623 2.36366 2.56223 3.02737 3.07113 3.15371 3.32405 3.71912 3.92096 4.07221 4.10100 4.32688 4.38567 4.46195 4.53222 4.62573 4.73033 4.75896 4.83933 4.90077 4.92533 4.94584 4.95472 4.99465 5.02300 5.19218 5.20681 5.21560 5.29718 5.31164 5.34370 5.50514 5.51636 5.56251 5.58491 5.63438 5.69859 5.77241 5.79250 5.84412 5.89174 5.93026 6.02947 6.14224 6.70947 7.01141 7.25633 7.45618 7.56757 7.88978 8.13092 8.58242 8.93689 9.41245 9.80695 10.80943 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.001860 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.059838 B =15051.529754 C =15893.477964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.101 4.101 5 C -0.102 4.102 6 H 0.098 0.902 7 C -0.155 4.155 8 C 0.536 3.464 9 O -0.537 6.537 10 N -0.617 5.617 11 C 0.102 3.898 12 C -0.097 4.097 13 H 0.098 0.902 14 C -0.139 4.139 15 C 0.080 3.920 16 H 0.091 0.909 17 N -0.652 5.652 18 C 0.046 3.954 19 C 0.450 3.550 20 O -0.565 6.565 21 N -0.589 5.589 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.880 5.880 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 C 0.073 3.927 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.354 0.646 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.371 0.629 50 H 0.273 0.727 51 H 0.084 0.916 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.655 -5.742 -3.497 33.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.139 4.139 5 C -0.124 4.124 6 H 0.116 0.884 7 C -0.212 4.212 8 C 0.325 3.675 9 O -0.414 6.414 10 N -0.351 5.351 11 C -0.021 4.021 12 C -0.117 4.117 13 H 0.116 0.884 14 C -0.197 4.197 15 C -0.032 4.032 16 H 0.109 0.891 17 N -0.283 5.283 18 C -0.087 4.087 19 C 0.235 3.765 20 O -0.447 6.447 21 N -0.229 5.229 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.195 1.195 30 C -0.052 4.052 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.175 0.825 47 H 0.107 0.893 48 H 0.065 0.935 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.102 0.898 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -32.087 -5.438 -3.584 32.741 hybrid contribution -0.028 -1.608 0.747 1.774 sum -32.115 -7.046 -2.837 33.001 Atomic orbital electron populations 1.22751 0.80944 1.02873 0.99947 1.87896 1.19730 1.27973 1.95406 1.22602 0.93976 0.84752 1.00235 1.21285 0.92291 0.95235 1.05059 1.21141 0.91838 0.98522 1.00851 0.88359 1.21995 1.02427 1.00964 0.95801 1.20208 0.88700 0.82755 0.75830 1.90733 1.74783 1.25978 1.49875 1.48671 1.07660 1.05997 1.72817 1.22417 0.98394 0.80561 1.00762 1.22111 0.93992 0.97076 0.98487 0.88422 1.21792 1.00844 1.00128 0.96904 1.22744 0.89934 0.91212 0.99301 0.89097 1.60170 0.99800 1.58033 1.10334 1.21786 0.92212 0.96519 0.98191 1.19659 0.84895 0.86510 0.85412 1.90565 1.84812 1.33867 1.35463 1.42206 1.08733 1.37362 1.34575 1.19432 0.82307 1.20995 1.20726 0.86252 1.25036 0.95059 0.97968 0.98013 1.69621 0.99479 1.42162 1.40773 0.86678 0.78393 0.82330 0.82039 1.19621 1.20144 1.19471 1.23303 0.80650 1.00793 1.00431 0.94049 0.94068 0.89556 0.92955 0.93289 0.90103 0.90259 0.91780 0.91274 0.91243 0.91097 0.90502 0.92990 0.91357 0.92565 0.82545 0.89340 0.93516 0.79667 0.91595 0.89777 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.49 10.70 -35.23 -0.38 -3.86 16 3 C 0.06 0.42 5.69 37.16 0.21 0.63 16 4 C -0.10 -0.86 4.40 -26.74 -0.12 -0.98 16 5 C -0.10 -0.75 2.10 -91.77 -0.19 -0.94 16 6 H 0.10 0.55 7.91 -51.93 -0.41 0.14 16 7 C -0.15 -0.85 8.77 37.15 0.33 -0.52 16 8 C 0.54 5.95 7.25 -10.98 -0.08 5.87 16 9 O -0.54 -8.25 16.13 5.56 0.09 -8.16 16 10 N -0.62 -6.04 3.29 -169.98 -0.56 -6.60 16 11 C 0.10 0.72 4.86 -2.98 -0.01 0.70 16 12 C -0.10 -0.83 3.33 -89.24 -0.30 -1.12 16 13 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 14 C -0.14 -1.08 8.90 37.16 0.33 -0.74 16 15 C 0.08 0.86 2.92 -66.02 -0.19 0.66 16 16 H 0.09 0.99 7.55 -51.93 -0.39 0.59 16 17 N -0.65 -9.16 5.95 -106.20 -0.63 -9.79 16 18 C 0.05 0.72 6.03 -4.97 -0.03 0.69 16 19 C 0.45 9.97 7.82 -10.99 -0.09 9.88 16 20 O -0.57 -14.81 15.78 5.55 0.09 -14.73 16 21 N -0.59 -13.92 5.09 -10.97 -0.06 -13.97 16 22 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 23 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 24 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 25 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 26 Si 0.88 19.40 27.74 -169.99 -4.72 14.69 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 30 C 0.07 0.80 6.65 -2.31 -0.02 0.78 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.28 6.57 -51.93 -0.34 -0.06 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.83 7.96 -51.93 -0.41 0.41 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.27 6.57 -51.93 -0.34 -0.07 16 40 H 0.07 0.33 5.12 -51.93 -0.27 0.06 16 41 H 0.07 0.43 7.22 -51.93 -0.37 0.05 16 42 H 0.08 0.41 6.91 -51.93 -0.36 0.05 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.35 5.17 7.91 -39.29 -0.31 4.86 16 47 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16 52 H 0.08 0.82 7.77 -51.93 -0.40 0.41 16 LS Contribution 413.09 15.07 6.23 6.23 Total: -1.00 -35.14 413.09 -7.33 -42.47 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -8.88 Total: 10.15 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 0.71 Total: 8.49 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.47 Total: -55.27 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.20 Total: -26.75 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.72 Total: 14.69 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.14 -7.33 -42.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216795258.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.504 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds