Wall clock time and date at job start Wed Apr 1 2020 01:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47129 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47177 * 55.00675 * 5 4 3 7 7 C 1.52993 * 109.47237 * 295.00065 * 5 4 3 8 8 C 1.50710 * 109.46975 * 174.99999 * 5 4 3 9 9 O 1.21272 * 120.00264 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99450 * 180.02562 * 8 5 4 11 11 C 1.47486 * 127.03845 * 0.02562 * 10 8 5 12 12 C 1.54006 * 107.08333 * 154.52182 * 11 10 8 13 13 H 1.08990 * 110.32583 * 120.19828 * 12 11 10 14 14 C 1.53004 * 110.32445 * 242.31262 * 12 11 10 15 15 C 1.54620 * 105.04338 * 1.30131 * 12 11 10 16 16 H 1.08996 * 110.74025 * 263.51238 * 15 12 11 17 17 N 1.46908 * 110.73376 * 140.19007 * 15 12 11 18 18 C 1.46903 * 110.99701 * 155.00304 * 17 15 12 19 19 C 1.50702 * 109.46735 * 179.97438 * 18 17 15 20 20 O 1.21287 * 119.99846 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99495 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99619 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00162 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99717 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99757 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 120.00382 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.46825 * 89.99385 * 26 24 22 28 28 H 1.48494 * 109.47292 * 209.99663 * 26 24 22 29 29 H 1.48498 * 109.46766 * 330.00088 * 26 24 22 30 30 C 1.48124 * 127.02865 * 179.71167 * 10 8 5 31 31 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 32 32 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 33 33 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 35 35 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 36 36 H 1.09002 * 109.47184 * 300.00269 * 4 3 2 37 37 H 1.09003 * 109.47090 * 59.99900 * 4 3 2 38 38 H 1.08999 * 109.47223 * 299.99745 * 7 5 4 39 39 H 1.08994 * 109.47270 * 60.00321 * 7 5 4 40 40 H 1.09004 * 109.47219 * 179.97438 * 7 5 4 41 41 H 1.08997 * 109.91037 * 273.88035 * 11 10 8 42 42 H 1.08993 * 109.90847 * 34.96653 * 11 10 8 43 43 H 1.08997 * 109.47344 * 58.54195 * 14 12 11 44 44 H 1.08992 * 109.47213 * 178.54413 * 14 12 11 45 45 H 1.09006 * 109.46864 * 298.54925 * 14 12 11 46 46 H 1.00903 * 110.99503 * 278.95441 * 17 15 12 47 47 H 1.09002 * 109.46862 * 299.99856 * 18 17 15 48 48 H 1.08994 * 109.47157 * 59.99619 * 18 17 15 49 49 H 0.96994 * 120.00061 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99805 * 180.02562 * 25 24 22 51 51 H 1.09002 * 110.65699 * 337.76126 * 30 10 8 52 52 H 1.08994 * 110.66365 * 100.88180 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 1 3.7668 3.1537 0.8432 7 6 3.8089 3.2965 -1.3059 8 6 5.6552 2.4653 0.1258 9 8 6.1735 1.3719 0.2056 10 7 6.4182 3.5761 0.1484 11 6 5.9552 4.9738 0.0629 12 6 7.0200 5.8461 0.7536 13 1 7.4268 6.5738 0.0516 14 6 6.4183 6.5582 1.9669 15 6 8.1212 4.8569 1.2003 16 1 7.9840 4.5718 2.2433 17 7 9.4556 5.4336 0.9883 18 6 10.4398 4.8314 1.8976 19 6 11.7934 5.4462 1.6509 20 8 11.9253 6.3013 0.8010 21 7 12.8574 5.0456 2.3748 22 6 14.0888 5.6052 2.1508 23 1 14.2061 6.3672 1.3946 24 6 15.1856 5.1926 2.8974 25 7 16.3659 5.7286 2.6823 26 14 14.9825 3.8750 4.2060 27 1 15.2051 2.5375 3.6003 28 1 15.9717 4.0980 5.2907 29 1 13.6091 3.9420 4.7668 30 6 7.8929 3.6430 0.2706 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6887 1.8463 -0.8899 35 1 1.6887 1.8463 0.8900 36 1 3.8568 0.6438 0.8908 37 1 3.8575 0.6435 -0.8891 38 1 4.2000 2.7251 -2.1477 39 1 2.7260 3.3811 -1.3960 40 1 4.2520 4.2924 -1.3053 41 1 5.8546 5.2683 -0.9817 42 1 4.9973 5.0793 0.5721 43 1 6.0267 5.8184 2.6650 44 1 7.1892 7.1505 2.4597 45 1 5.6103 7.2128 1.6401 46 1 9.7437 5.3343 0.0264 47 1 10.1401 5.0137 2.9296 48 1 10.4906 3.7575 1.7183 49 1 12.7517 4.3620 3.0547 50 1 17.1317 5.4403 3.2033 51 1 8.2827 2.7324 0.7256 52 1 8.3521 3.8149 -0.7028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216795258.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:05 Heat of formation + Delta-G solvation = -143.078218 kcal Electronic energy + Delta-G solvation = -29898.271927 eV Core-core repulsion = 25703.679420 eV Total energy + Delta-G solvation = -4194.592507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50237 -40.34385 -39.37660 -38.75699 -36.28918 -35.96494 -35.48538 -33.76408 -33.40176 -30.86652 -29.68133 -27.86443 -27.50744 -27.14498 -26.00384 -25.26791 -23.55193 -22.14073 -21.52054 -21.15071 -20.30019 -20.03105 -18.33671 -17.81141 -17.50419 -17.18600 -17.07488 -16.97501 -16.58057 -16.16233 -16.00075 -15.68014 -15.57869 -15.08648 -14.97818 -14.68262 -14.57040 -14.36829 -14.07814 -14.03143 -13.96072 -13.88752 -13.55160 -13.32470 -13.01236 -12.92545 -12.87098 -12.72761 -12.56918 -12.42627 -12.26581 -12.03585 -11.98585 -11.93058 -11.89717 -11.77268 -11.57863 -11.52577 -10.85081 -10.56410 -10.44460 -10.25860 -9.86145 -9.32045 -8.42306 -6.03008 1.29367 1.34170 1.42939 1.55078 1.80457 1.94203 2.21571 2.67973 2.85480 3.14201 3.26719 3.43226 3.63208 3.73008 3.85869 3.91833 3.99218 4.12741 4.21709 4.24391 4.27675 4.30363 4.35585 4.41466 4.46592 4.50178 4.55627 4.56787 4.57503 4.68660 4.75546 4.82386 4.85599 4.87763 4.91043 4.93242 5.00075 5.02262 5.18662 5.24961 5.32351 5.35444 5.47999 5.53077 5.89777 6.01949 6.26356 6.30317 6.49523 6.58214 6.86840 7.07253 7.38514 7.94315 8.75162 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.001860 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.059838 B =15051.529754 C =15893.477964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.063 3.937 4 C -0.098 4.098 5 C -0.092 4.092 6 H 0.127 0.873 7 C -0.151 4.151 8 C 0.529 3.471 9 O -0.591 6.591 10 N -0.614 5.614 11 C 0.103 3.897 12 C -0.093 4.093 13 H 0.091 0.909 14 C -0.135 4.135 15 C 0.085 3.915 16 H 0.096 0.904 17 N -0.662 5.662 18 C 0.060 3.940 19 C 0.450 3.550 20 O -0.611 6.611 21 N -0.591 5.591 22 C -0.329 4.329 23 H 0.057 0.943 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.962 3.038 27 H -0.259 1.259 28 H -0.274 1.274 29 H -0.232 1.232 30 C 0.073 3.927 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.077 0.923 46 H 0.348 0.652 47 H 0.115 0.885 48 H 0.072 0.928 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.065 0.935 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.510 -6.241 -1.973 37.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.013 4.013 4 C -0.136 4.136 5 C -0.113 4.113 6 H 0.145 0.855 7 C -0.208 4.208 8 C 0.319 3.681 9 O -0.471 6.471 10 N -0.347 5.347 11 C -0.019 4.019 12 C -0.112 4.112 13 H 0.109 0.891 14 C -0.193 4.193 15 C -0.026 4.026 16 H 0.114 0.886 17 N -0.294 5.294 18 C -0.073 4.073 19 C 0.238 3.762 20 O -0.496 6.496 21 N -0.233 5.233 22 C -0.458 4.458 23 H 0.076 0.924 24 C -0.211 4.211 25 N -0.573 5.573 26 Si 0.782 3.218 27 H -0.184 1.184 28 H -0.199 1.199 29 H -0.155 1.155 30 C -0.053 4.053 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.124 0.876 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.168 0.832 47 H 0.132 0.868 48 H 0.090 0.910 49 H 0.224 0.776 50 H 0.089 0.911 51 H 0.083 0.917 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -35.994 -5.906 -2.061 36.534 hybrid contribution 1.163 -1.365 0.150 1.800 sum -34.831 -7.271 -1.911 35.633 Atomic orbital electron populations 1.22921 0.79308 1.03669 1.01127 1.87851 1.21667 1.29353 1.95680 1.22648 0.92289 0.84405 1.01966 1.21216 0.94033 0.95642 1.02714 1.21153 0.88744 0.98289 1.03097 0.85502 1.22013 1.04045 1.00908 0.93848 1.20968 0.90287 0.82107 0.74721 1.90708 1.75981 1.28054 1.52397 1.48737 1.07017 1.07057 1.71894 1.22611 0.98921 0.78272 1.02077 1.22087 0.93555 0.96676 0.98922 0.89102 1.21766 1.00836 1.00301 0.96369 1.22769 0.88681 0.91670 0.99465 0.88636 1.60216 1.00790 1.58672 1.09699 1.21699 0.88448 0.97187 0.99946 1.20899 0.86711 0.85131 0.83474 1.90544 1.85995 1.35853 1.37162 1.42046 1.07569 1.37995 1.35699 1.19021 0.85125 1.21091 1.20577 0.92444 1.26070 0.93882 1.00634 1.00559 1.69798 1.00782 1.44293 1.42471 0.85405 0.80340 0.78149 0.77907 1.18404 1.19917 1.15526 1.23187 0.81823 1.00014 1.00243 0.92880 0.92784 0.89140 0.91029 0.91494 0.92621 0.92574 0.93308 0.88875 0.89918 0.89427 0.87553 0.92235 0.93287 0.90450 0.83203 0.86751 0.91043 0.77569 0.91145 0.91665 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.43 -7.10 10.70 -148.98 -1.59 -8.69 16 3 C 0.06 0.72 5.69 71.98 0.41 1.13 16 4 C -0.10 -1.60 4.40 30.59 0.13 -1.46 16 5 C -0.09 -1.13 2.10 -11.54 -0.02 -1.15 16 6 H 0.13 0.87 7.91 -2.38 -0.02 0.85 16 7 C -0.15 -1.16 8.77 71.98 0.63 -0.52 16 8 C 0.53 11.15 7.25 87.66 0.64 11.79 16 9 O -0.59 -18.56 16.13 -3.00 -0.05 -18.61 16 10 N -0.61 -10.83 3.29 -810.08 -2.66 -13.50 16 11 C 0.10 1.08 4.86 86.53 0.42 1.50 16 12 C -0.09 -1.33 3.33 -9.90 -0.03 -1.36 16 13 H 0.09 1.48 8.05 -2.39 -0.02 1.46 16 14 C -0.14 -1.64 8.90 71.98 0.64 -1.00 16 15 C 0.09 1.66 2.92 46.01 0.13 1.80 16 16 H 0.10 1.81 7.55 -2.39 -0.02 1.79 16 17 N -0.66 -17.89 5.95 -489.92 -2.92 -20.81 16 18 C 0.06 1.77 6.03 85.56 0.52 2.29 16 19 C 0.45 20.04 7.82 87.66 0.69 20.73 16 20 O -0.61 -33.26 15.78 -3.05 -0.05 -33.31 16 21 N -0.59 -27.90 5.09 -306.99 -1.56 -29.47 16 22 C -0.33 -19.31 10.16 84.04 0.85 -18.45 16 23 H 0.06 4.00 7.39 -2.91 -0.02 3.98 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 25 N -0.93 -56.39 13.96 21.66 0.30 -56.09 16 26 Si 0.96 39.20 27.74 68.60 1.90 41.11 16 27 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 29 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 30 C 0.07 1.52 6.65 86.61 0.58 2.09 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.53 6.57 -2.39 -0.02 0.52 16 35 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.05 1.17 7.96 -2.39 -0.02 1.15 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 39 H 0.09 0.31 6.57 -2.39 -0.02 0.29 16 40 H 0.08 0.42 5.12 -2.38 -0.01 0.41 16 41 H 0.09 0.70 7.22 -2.39 -0.02 0.69 16 42 H 0.11 0.56 6.91 -2.39 -0.02 0.54 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 46 H 0.35 10.12 7.91 -89.69 -0.71 9.41 16 47 H 0.11 2.89 8.08 -2.39 -0.02 2.88 16 48 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.39 15.31 5.76 -92.71 -0.53 14.78 16 50 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 51 H 0.06 1.62 7.85 -2.39 -0.02 1.60 16 52 H 0.07 1.55 7.77 -2.39 -0.02 1.53 16 Total: -1.00 -84.33 413.09 0.29 -84.03 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -0.38 Total: 36.70 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 7.30 Total: 18.62 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -6.84 Total: -119.86 kcal Atomic # 8 Polarization: -58.91 SS G_CDS: -1.69 Total: -60.60 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 1.90 Total: 41.11 kcal Total: -84.33 0.29 -84.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216795258.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.044 kcal (2) G-P(sol) polarization free energy of solvation -84.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds