Wall clock time and date at job start Wed Apr 1 2020 01:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47107 * 2 1 4 4 C 1.52998 * 109.46938 * 119.99647 * 2 1 3 5 5 C 1.53006 * 109.47115 * 65.00267 * 4 2 1 6 6 H 1.08991 * 109.46905 * 304.99738 * 5 4 2 7 7 C 1.52993 * 109.47012 * 64.99833 * 5 4 2 8 8 C 1.50705 * 109.46691 * 184.99824 * 5 4 2 9 9 O 1.21273 * 120.00344 * 0.02562 * 8 5 4 10 10 N 1.34781 * 119.99464 * 179.97438 * 8 5 4 11 11 C 1.46493 * 119.99809 * 179.97438 * 10 8 5 12 12 H 1.09002 * 110.36904 * 35.73116 * 11 10 8 13 13 C 1.54385 * 110.32510 * 273.54523 * 11 10 8 14 14 N 1.48562 * 104.59406 * 217.25093 * 13 11 10 15 15 C 1.46901 * 110.99567 * 159.04212 * 14 13 11 16 16 C 1.50701 * 109.46921 * 169.99894 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46986 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47457 * 119.99901 * 23 21 19 26 26 H 1.48501 * 109.47104 * 239.99973 * 23 21 19 27 27 C 1.48554 * 104.22366 * 39.48381 * 14 13 11 28 28 C 1.54258 * 110.32488 * 157.91229 * 11 10 8 29 29 H 1.09008 * 110.32273 * 237.79075 * 28 11 10 30 30 O 1.42905 * 110.32306 * 359.89208 * 28 11 10 31 31 H 1.08997 * 109.46990 * 60.00549 * 1 2 3 32 32 H 1.08999 * 109.46972 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47299 * 300.00285 * 1 2 3 34 34 H 1.08996 * 109.47299 * 239.99715 * 2 1 3 35 35 H 1.08997 * 109.47440 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46948 * 299.99917 * 3 2 1 37 37 H 1.08996 * 109.47274 * 59.99700 * 3 2 1 38 38 H 1.08996 * 109.47400 * 304.99964 * 4 2 1 39 39 H 1.09001 * 109.47188 * 184.99987 * 4 2 1 40 40 H 1.09004 * 109.47414 * 60.00394 * 7 5 4 41 41 H 1.09005 * 109.46888 * 179.97438 * 7 5 4 42 42 H 1.08998 * 109.47535 * 299.99699 * 7 5 4 43 43 H 0.96998 * 119.99957 * 359.97438 * 10 8 5 44 44 H 1.09005 * 110.40729 * 98.47143 * 13 11 10 45 45 H 1.08998 * 110.51135 * 336.08519 * 13 11 10 46 46 H 1.09002 * 109.47401 * 49.99922 * 15 14 13 47 47 H 1.09001 * 109.46874 * 289.99935 * 15 14 13 48 48 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 49 49 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 50 50 H 1.09002 * 110.41148 * 79.29006 * 27 14 13 51 51 H 1.08997 * 110.41369 * 201.73410 * 27 14 13 52 52 H 0.96700 * 114.00160 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1880 6 1 0.5563 -2.2707 1.0528 7 6 2.3448 -2.8707 0.0128 8 6 2.0294 -2.8783 2.4724 9 8 2.5793 -2.2478 3.3504 10 7 1.7697 -4.1894 2.6457 11 6 2.1533 -4.8533 3.8939 12 1 2.0316 -4.1742 4.7378 13 6 3.6130 -5.3493 3.8109 14 7 3.6090 -6.6471 4.5338 15 6 4.7568 -7.4739 4.1374 16 6 4.8604 -8.6634 5.0569 17 8 4.0568 -8.8084 5.9538 18 7 5.8453 -9.5667 4.8818 19 6 5.9392 -10.6491 5.7180 20 1 5.2242 -10.7777 6.5172 21 6 6.9548 -11.5800 5.5379 22 7 7.8251 -11.4232 4.5658 23 14 7.0825 -13.0552 6.6767 24 1 5.9902 -13.0010 7.6812 25 1 6.9644 -14.3048 5.8832 26 1 8.3948 -13.0322 7.3714 27 6 2.3291 -7.2851 4.1317 28 6 1.3088 -6.1269 4.1049 29 1 0.7725 -6.0728 5.0524 30 8 0.3894 -6.2974 3.0243 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 1.6054 -0.2616 2.1370 39 1 3.1263 -0.6443 1.2952 40 1 3.4238 -2.7955 0.1481 41 1 2.0568 -3.9211 -0.0305 42 1 2.0598 -2.3769 -0.9161 43 1 1.3288 -4.6934 1.9439 44 1 4.2829 -4.6429 4.3013 45 1 3.9087 -5.4937 2.7718 46 1 5.6703 -6.8830 4.2034 47 1 4.6198 -7.8179 3.1122 48 1 6.4876 -9.4509 4.1643 49 1 8.5339 -12.0733 4.4399 50 1 2.4219 -7.7328 3.1422 51 1 2.0324 -8.0363 4.8635 52 1 -0.1687 -7.0832 3.1029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220626453.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:11 Heat of formation + Delta-G solvation = -131.130351 kcal Electronic energy + Delta-G solvation = -30337.927801 eV Core-core repulsion = 26143.853392 eV Total energy + Delta-G solvation = -4194.074408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.49505 -39.22265 -37.93971 -37.07830 -35.84310 -34.36942 -33.83351 -32.94216 -31.27845 -30.16141 -28.06612 -27.51801 -26.96640 -26.51950 -24.44767 -23.75651 -21.55508 -20.91650 -20.43275 -19.62180 -19.19654 -17.91095 -17.75209 -17.22363 -16.24500 -16.11399 -15.69185 -15.38058 -15.21319 -14.90394 -14.71212 -14.36461 -14.26005 -13.97446 -13.75497 -13.65906 -13.45400 -13.33035 -12.94332 -12.89358 -12.65648 -12.59957 -12.23438 -12.12850 -12.05015 -11.80009 -11.56262 -11.54175 -11.45838 -11.32613 -11.13881 -11.01764 -10.90250 -10.81283 -10.78306 -10.35386 -10.24004 -10.13029 -9.80113 -9.51741 -9.13722 -8.58722 -8.07901 -7.96603 -6.42663 -3.83568 2.55328 2.92570 3.15396 3.26058 3.33135 3.82986 3.89291 4.10367 4.29097 4.38272 4.44411 4.51906 4.56643 4.58502 4.73768 4.84337 4.94615 5.04585 5.07704 5.13910 5.22659 5.24930 5.26669 5.30406 5.40677 5.42153 5.46948 5.56508 5.59684 5.62990 5.68158 5.73445 5.76016 5.78784 5.81701 5.89854 5.93919 5.96382 6.06690 6.13212 6.16095 6.23618 6.34566 6.94669 7.08041 7.38436 7.48936 7.54376 8.05154 8.17550 8.60652 9.17217 9.53385 10.05064 10.75195 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024938 B = 0.001880 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.515823 B =14892.780139 C =15391.943579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.095 4.095 5 C -0.111 4.111 6 H 0.098 0.902 7 C -0.146 4.146 8 C 0.514 3.486 9 O -0.542 6.542 10 N -0.710 5.710 11 C 0.152 3.848 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.477 5.477 15 C 0.036 3.964 16 C 0.446 3.554 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.006 3.994 28 C 0.094 3.906 29 H 0.079 0.921 30 O -0.568 6.568 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.409 0.591 44 H 0.090 0.910 45 H 0.048 0.952 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.050 0.950 51 H 0.102 0.898 52 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.193 18.891 -13.159 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.205 4.205 4 C -0.133 4.133 5 C -0.133 4.133 6 H 0.116 0.884 7 C -0.204 4.204 8 C 0.301 3.699 9 O -0.419 6.419 10 N -0.363 5.363 11 C 0.046 3.954 12 H 0.122 0.878 13 C -0.109 4.109 14 N -0.202 5.202 15 C -0.096 4.096 16 C 0.231 3.769 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.122 4.122 28 C 0.034 3.966 29 H 0.097 0.903 30 O -0.374 6.374 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.246 0.754 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.069 0.931 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.068 0.932 51 H 0.120 0.880 52 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -13.862 19.725 -11.584 26.748 hybrid contribution 0.222 -1.746 -0.934 1.993 sum -13.640 17.980 -12.518 25.808 Atomic orbital electron populations 1.21915 0.95363 1.01764 1.01744 1.21200 0.95847 0.96320 0.98463 1.21824 1.01079 0.95877 1.01671 1.21464 1.01754 0.92116 0.97949 1.21368 1.02299 0.96552 0.93032 0.88390 1.21836 1.01007 1.00376 0.97134 1.20741 0.78348 0.81828 0.89004 1.90702 1.42233 1.64768 1.44154 1.45824 1.61431 1.09757 1.19307 1.21710 0.92906 0.92628 0.88193 0.87804 1.23605 0.96679 0.92961 0.97623 1.65086 1.01122 1.02143 1.51854 1.22072 0.94840 0.95425 0.97260 1.19666 0.84591 0.84858 0.87807 1.90505 1.43306 1.77173 1.35128 1.41866 1.26536 1.21477 1.30340 1.19745 1.12588 0.99367 1.11044 0.87855 1.25263 0.95693 0.99508 0.97543 1.69623 1.16426 1.37217 1.31087 0.85798 0.78297 0.80471 0.79762 1.19228 1.20799 1.20741 1.23900 0.90374 0.97230 1.00710 1.22846 0.89672 0.94017 0.90040 0.90327 1.86230 1.53522 1.50463 1.47185 0.92827 0.92513 0.92633 0.90893 0.92630 0.92814 0.92645 0.91065 0.91224 0.91988 0.92151 0.91197 0.75391 0.89191 0.93373 0.89113 0.93061 0.77521 0.91934 0.93164 0.87997 0.76495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.96 37.16 0.33 -0.54 16 2 C -0.10 -0.64 2.78 -90.62 -0.25 -0.89 16 3 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 4 C -0.09 -0.79 3.50 -26.73 -0.09 -0.89 16 5 C -0.11 -0.90 2.59 -91.77 -0.24 -1.14 16 6 H 0.10 0.67 6.34 -51.93 -0.33 0.34 16 7 C -0.15 -0.99 8.85 37.15 0.33 -0.66 16 8 C 0.51 5.94 7.15 -10.98 -0.08 5.86 16 9 O -0.54 -8.30 15.62 5.56 0.09 -8.21 16 10 N -0.71 -7.62 4.79 -52.47 -0.25 -7.87 16 11 C 0.15 1.90 3.36 -66.55 -0.22 1.67 16 12 H 0.10 1.43 7.65 -51.93 -0.40 1.03 16 13 C 0.02 0.29 6.17 -2.18 -0.01 0.27 16 14 N -0.48 -7.94 4.98 -231.41 -1.15 -9.09 16 15 C 0.04 0.64 5.32 -4.97 -0.03 0.62 16 16 C 0.45 10.48 7.63 -10.98 -0.08 10.40 16 17 O -0.58 -15.44 14.80 5.55 0.08 -15.36 16 18 N -0.57 -14.30 5.29 -10.96 -0.06 -14.36 16 19 C -0.30 -8.28 9.68 -14.94 -0.14 -8.42 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 23 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.01 0.09 5.67 -2.19 -0.01 0.08 16 28 C 0.09 1.09 4.42 -25.35 -0.11 0.97 16 29 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 30 O -0.57 -5.18 11.50 -35.23 -0.41 -5.59 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.31 6.46 -51.93 -0.34 -0.03 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.43 6.34 -51.93 -0.33 0.10 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.69 7.95 -51.93 -0.41 0.28 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.38 7.57 -51.93 -0.39 -0.01 16 42 H 0.07 0.37 6.46 -51.93 -0.34 0.04 16 43 H 0.41 3.83 6.60 -40.82 -0.27 3.56 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 46 H 0.09 1.51 8.08 -51.93 -0.42 1.09 16 47 H 0.05 0.84 7.77 -51.93 -0.40 0.43 16 48 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 49 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.05 0.71 7.69 -51.93 -0.40 0.31 16 51 H 0.10 1.73 7.24 -51.93 -0.38 1.35 16 52 H 0.39 2.18 9.12 45.56 0.42 2.60 16 LS Contribution 411.47 15.07 6.20 6.20 Total: -1.00 -33.15 411.47 -8.20 -41.35 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -8.03 Total: 13.51 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -0.37 Total: 7.25 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.74 Total: -55.12 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.24 Total: -29.16 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.15 -8.20 -41.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220626453.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.780 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds