Wall clock time and date at job start Wed Apr 1 2020 01:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47107 * 2 1 4 4 C 1.52998 * 109.46938 * 119.99647 * 2 1 3 5 5 C 1.53006 * 109.47115 * 65.00267 * 4 2 1 6 6 H 1.08991 * 109.46905 * 304.99738 * 5 4 2 7 7 C 1.52993 * 109.47012 * 64.99833 * 5 4 2 8 8 C 1.50705 * 109.46691 * 184.99824 * 5 4 2 9 9 O 1.21273 * 120.00344 * 0.02562 * 8 5 4 10 10 N 1.34781 * 119.99464 * 179.97438 * 8 5 4 11 11 C 1.46493 * 119.99809 * 179.97438 * 10 8 5 12 12 H 1.09002 * 110.36904 * 35.73116 * 11 10 8 13 13 C 1.54385 * 110.32510 * 273.54523 * 11 10 8 14 14 N 1.48562 * 104.59406 * 217.25093 * 13 11 10 15 15 C 1.46901 * 110.99567 * 159.04212 * 14 13 11 16 16 C 1.50701 * 109.46921 * 169.99894 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46986 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47457 * 119.99901 * 23 21 19 26 26 H 1.48501 * 109.47104 * 239.99973 * 23 21 19 27 27 C 1.48554 * 104.22366 * 39.48381 * 14 13 11 28 28 C 1.54258 * 110.32488 * 157.91229 * 11 10 8 29 29 H 1.09008 * 110.32273 * 237.79075 * 28 11 10 30 30 O 1.42905 * 110.32306 * 359.89208 * 28 11 10 31 31 H 1.08997 * 109.46990 * 60.00549 * 1 2 3 32 32 H 1.08999 * 109.46972 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47299 * 300.00285 * 1 2 3 34 34 H 1.08996 * 109.47299 * 239.99715 * 2 1 3 35 35 H 1.08997 * 109.47440 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46948 * 299.99917 * 3 2 1 37 37 H 1.08996 * 109.47274 * 59.99700 * 3 2 1 38 38 H 1.08996 * 109.47400 * 304.99964 * 4 2 1 39 39 H 1.09001 * 109.47188 * 184.99987 * 4 2 1 40 40 H 1.09004 * 109.47414 * 60.00394 * 7 5 4 41 41 H 1.09005 * 109.46888 * 179.97438 * 7 5 4 42 42 H 1.08998 * 109.47535 * 299.99699 * 7 5 4 43 43 H 0.96998 * 119.99957 * 359.97438 * 10 8 5 44 44 H 1.09005 * 110.40729 * 98.47143 * 13 11 10 45 45 H 1.08998 * 110.51135 * 336.08519 * 13 11 10 46 46 H 1.09002 * 109.47401 * 49.99922 * 15 14 13 47 47 H 1.09001 * 109.46874 * 289.99935 * 15 14 13 48 48 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 49 49 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 50 50 H 1.09002 * 110.41148 * 79.29006 * 27 14 13 51 51 H 1.08997 * 110.41369 * 201.73410 * 27 14 13 52 52 H 0.96700 * 114.00160 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1880 6 1 0.5563 -2.2707 1.0528 7 6 2.3448 -2.8707 0.0128 8 6 2.0294 -2.8783 2.4724 9 8 2.5793 -2.2478 3.3504 10 7 1.7697 -4.1894 2.6457 11 6 2.1533 -4.8533 3.8939 12 1 2.0316 -4.1742 4.7378 13 6 3.6130 -5.3493 3.8109 14 7 3.6090 -6.6471 4.5338 15 6 4.7568 -7.4739 4.1374 16 6 4.8604 -8.6634 5.0569 17 8 4.0568 -8.8084 5.9538 18 7 5.8453 -9.5667 4.8818 19 6 5.9392 -10.6491 5.7180 20 1 5.2242 -10.7777 6.5172 21 6 6.9548 -11.5800 5.5379 22 7 7.8251 -11.4232 4.5658 23 14 7.0825 -13.0552 6.6767 24 1 5.9902 -13.0010 7.6812 25 1 6.9644 -14.3048 5.8832 26 1 8.3948 -13.0322 7.3714 27 6 2.3291 -7.2851 4.1317 28 6 1.3088 -6.1269 4.1049 29 1 0.7725 -6.0728 5.0524 30 8 0.3894 -6.2974 3.0243 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 1.6054 -0.2616 2.1370 39 1 3.1263 -0.6443 1.2952 40 1 3.4238 -2.7955 0.1481 41 1 2.0568 -3.9211 -0.0305 42 1 2.0598 -2.3769 -0.9161 43 1 1.3288 -4.6934 1.9439 44 1 4.2829 -4.6429 4.3013 45 1 3.9087 -5.4937 2.7718 46 1 5.6703 -6.8830 4.2034 47 1 4.6198 -7.8179 3.1122 48 1 6.4876 -9.4509 4.1643 49 1 8.5339 -12.0733 4.4399 50 1 2.4219 -7.7328 3.1422 51 1 2.0324 -8.0363 4.8635 52 1 -0.1687 -7.0832 3.1029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220626453.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:10 Heat of formation + Delta-G solvation = -157.750499 kcal Electronic energy + Delta-G solvation = -30339.082137 eV Core-core repulsion = 26143.853392 eV Total energy + Delta-G solvation = -4195.228745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.48606 -40.46878 -39.50037 -37.76752 -36.90022 -35.92093 -35.29088 -33.62024 -33.27930 -31.37407 -29.16181 -28.08963 -27.97589 -27.51916 -26.11578 -24.63089 -22.79618 -21.80970 -21.33910 -21.00645 -20.25007 -19.89361 -18.64721 -18.12743 -17.80525 -17.11670 -16.61791 -16.60386 -16.39842 -16.26603 -15.96164 -15.76606 -15.40295 -15.03114 -14.89876 -14.73191 -14.40017 -14.16378 -14.12625 -13.98936 -13.72082 -13.45026 -13.28170 -13.16316 -13.12780 -12.97209 -12.77452 -12.59511 -12.53100 -12.40824 -12.32191 -12.13656 -12.11838 -12.05149 -11.59035 -11.49998 -11.38503 -11.35027 -11.06226 -10.71198 -10.38925 -10.11003 -10.01669 -9.48611 -8.47265 -5.96025 1.36141 1.41582 1.55658 1.64849 2.00792 2.03905 2.28808 2.76690 3.11831 3.18841 3.31604 3.46387 3.69938 3.75206 3.80655 3.95561 4.02891 4.15790 4.18747 4.24292 4.28550 4.31819 4.39365 4.42385 4.47125 4.49623 4.61541 4.74125 4.82014 4.82986 4.86957 4.89762 4.93905 4.96330 5.03845 5.08365 5.15702 5.24126 5.28310 5.35841 5.39258 5.40862 5.52781 5.60202 5.72527 5.77903 6.02905 6.59340 6.60474 6.76188 7.12180 7.30422 7.55088 8.10569 8.70426 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024938 B = 0.001880 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.515823 B =14892.780139 C =15391.943579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.092 4.092 5 C -0.103 4.103 6 H 0.118 0.882 7 C -0.143 4.143 8 C 0.510 3.490 9 O -0.585 6.585 10 N -0.698 5.698 11 C 0.153 3.847 12 H 0.089 0.911 13 C 0.028 3.972 14 N -0.501 5.501 15 C 0.048 3.952 16 C 0.444 3.556 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.009 3.991 28 C 0.113 3.887 29 H 0.083 0.917 30 O -0.562 6.562 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.419 0.581 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.105 0.895 47 H 0.074 0.926 48 H 0.395 0.605 49 H 0.277 0.723 50 H 0.058 0.942 51 H 0.073 0.927 52 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.132 18.916 -15.180 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.130 4.130 5 C -0.124 4.124 6 H 0.136 0.864 7 C -0.200 4.200 8 C 0.298 3.702 9 O -0.464 6.464 10 N -0.351 5.351 11 C 0.047 3.953 12 H 0.107 0.893 13 C -0.101 4.101 14 N -0.227 5.227 15 C -0.083 4.083 16 C 0.231 3.769 17 O -0.499 6.499 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.119 4.119 28 C 0.053 3.947 29 H 0.101 0.899 30 O -0.370 6.370 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.258 0.742 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.124 0.876 47 H 0.092 0.908 48 H 0.229 0.771 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.092 0.908 52 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -14.821 19.741 -13.653 28.209 hybrid contribution 0.480 -1.715 -0.306 1.807 sum -14.342 18.026 -13.959 26.934 Atomic orbital electron populations 1.21917 0.94650 1.02290 1.01888 1.21176 0.96364 0.96120 0.97637 1.21841 1.00883 0.95977 1.01907 1.21414 1.00638 0.92621 0.98298 1.21390 1.03534 0.95878 0.91614 0.86421 1.21845 1.00084 1.01001 0.97101 1.21412 0.77360 0.81766 0.89621 1.90688 1.44227 1.65675 1.45859 1.45733 1.60966 1.09604 1.18839 1.21524 0.92341 0.92842 0.88631 0.89254 1.23532 0.97568 0.91257 0.97698 1.64978 1.01378 1.03080 1.53236 1.21912 0.96346 0.93431 0.96634 1.20627 0.83071 0.85486 0.87706 1.90478 1.44367 1.78196 1.36886 1.41928 1.27298 1.21609 1.30374 1.19698 1.13288 1.01285 1.11801 0.90227 1.26044 0.94856 1.01632 0.98815 1.69683 1.16603 1.38119 1.31831 0.84860 0.78225 0.77340 0.77841 1.19758 1.19521 1.19768 1.23844 0.90382 0.97710 1.00003 1.22504 0.89255 0.91967 0.90992 0.89928 1.86196 1.53145 1.51682 1.46017 0.91852 0.91784 0.93369 0.89718 0.93015 0.91683 0.93307 0.92984 0.92851 0.93147 0.91244 0.89217 0.74199 0.90221 0.92212 0.87647 0.90804 0.77085 0.91328 0.92417 0.90823 0.74369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.96 71.98 0.64 -0.78 16 2 C -0.09 -1.05 2.78 -10.80 -0.03 -1.08 16 3 C -0.15 -1.69 9.19 71.98 0.66 -1.03 16 4 C -0.09 -1.47 3.50 30.60 0.11 -1.36 16 5 C -0.10 -1.49 2.59 -11.54 -0.03 -1.52 16 6 H 0.12 1.28 6.34 -2.39 -0.02 1.26 16 7 C -0.14 -1.56 8.85 71.98 0.64 -0.93 16 8 C 0.51 11.32 7.15 87.66 0.63 11.94 16 9 O -0.58 -18.13 15.62 -3.01 -0.05 -18.18 16 10 N -0.70 -13.83 4.79 -438.30 -2.10 -15.93 16 11 C 0.15 3.70 3.36 45.89 0.15 3.85 16 12 H 0.09 2.46 7.65 -2.39 -0.02 2.45 16 13 C 0.03 0.77 6.17 86.45 0.53 1.30 16 14 N -0.50 -16.48 4.98 -886.03 -4.41 -20.89 16 15 C 0.05 1.71 5.32 85.56 0.45 2.16 16 16 C 0.44 21.20 7.63 87.66 0.67 21.87 16 17 O -0.61 -33.76 14.80 -3.07 -0.05 -33.81 16 18 N -0.57 -29.56 5.29 -306.98 -1.62 -31.19 16 19 C -0.33 -18.81 9.68 84.04 0.81 -17.99 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 22 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 23 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 C 0.01 0.26 5.67 86.45 0.49 0.75 16 28 C 0.11 2.46 4.42 31.49 0.14 2.60 16 29 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 30 O -0.56 -8.74 11.50 -148.98 -1.71 -10.46 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.51 6.46 -2.39 -0.02 0.49 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 0.76 6.34 -2.39 -0.02 0.75 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.05 1.03 7.95 -2.39 -0.02 1.01 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.07 0.65 7.57 -2.38 -0.02 0.63 16 42 H 0.09 0.65 6.46 -2.39 -0.02 0.64 16 43 H 0.42 6.69 6.60 -92.71 -0.61 6.08 16 44 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 45 H 0.06 1.48 7.91 -2.39 -0.02 1.46 16 46 H 0.11 3.41 8.08 -2.39 -0.02 3.39 16 47 H 0.07 2.29 7.77 -2.39 -0.02 2.27 16 48 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 49 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 50 H 0.06 1.54 7.69 -2.39 -0.02 1.53 16 51 H 0.07 2.54 7.24 -2.39 -0.02 2.52 16 52 H 0.40 3.41 9.12 -74.06 -0.68 2.73 16 Total: -1.00 -73.01 411.47 -2.36 -75.38 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -1.07 Total: 40.08 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 6.34 Total: 19.52 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -7.85 Total: -117.47 kcal Atomic # 8 Polarization: -60.64 SS G_CDS: -1.81 Total: -62.44 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -73.01 -2.36 -75.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220626453.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.373 kcal (2) G-P(sol) polarization free energy of solvation -73.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds