Wall clock time and date at job start Wed Apr 1 2020 01:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47002 * 2 1 4 4 C 1.53004 * 109.46639 * 119.99829 * 2 1 3 5 5 C 1.52998 * 109.47343 * 65.83041 * 4 2 1 6 6 H 1.08998 * 109.47061 * 306.61633 * 5 4 2 7 7 C 1.52996 * 109.46988 * 186.61500 * 5 4 2 8 8 C 1.50701 * 109.46867 * 66.61505 * 5 4 2 9 9 O 1.21286 * 120.00160 * 0.02562 * 8 5 4 10 10 N 1.34774 * 120.00089 * 179.97438 * 8 5 4 11 11 C 1.46495 * 120.00432 * 179.97438 * 10 8 5 12 12 H 1.09004 * 110.36539 * 32.82323 * 11 10 8 13 13 C 1.54376 * 110.32624 * 270.64066 * 11 10 8 14 14 N 1.48566 * 104.59778 * 217.24640 * 13 11 10 15 15 C 1.46891 * 111.00130 * 159.03925 * 14 13 11 16 16 C 1.50704 * 109.47448 * 174.71100 * 15 14 13 17 17 O 1.21293 * 119.99343 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00371 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00189 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99643 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00170 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00058 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00076 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46808 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47019 * 120.00155 * 23 21 19 26 26 H 1.48500 * 109.47105 * 240.00144 * 23 21 19 27 27 C 1.48558 * 104.21718 * 39.48594 * 14 13 11 28 28 C 1.54266 * 110.32580 * 155.00110 * 11 10 8 29 29 H 1.09002 * 110.32401 * 237.79609 * 28 11 10 30 30 O 1.42900 * 110.40755 * 359.96123 * 28 11 10 31 31 H 1.08999 * 109.47611 * 294.87198 * 1 2 3 32 32 H 1.09003 * 109.47113 * 54.86988 * 1 2 3 33 33 H 1.09006 * 109.47195 * 174.86872 * 1 2 3 34 34 H 1.08998 * 109.47555 * 239.99224 * 2 1 3 35 35 H 1.09000 * 109.46466 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47020 * 299.99589 * 3 2 1 37 37 H 1.08996 * 109.47248 * 59.99937 * 3 2 1 38 38 H 1.08998 * 109.47241 * 305.82700 * 4 2 1 39 39 H 1.09001 * 109.46866 * 185.83436 * 4 2 1 40 40 H 1.08998 * 109.47546 * 55.00869 * 7 5 4 41 41 H 1.09008 * 109.46959 * 175.00855 * 7 5 4 42 42 H 1.09000 * 109.47357 * 294.99953 * 7 5 4 43 43 H 0.97005 * 119.99914 * 0.02562 * 10 8 5 44 44 H 1.09004 * 110.40820 * 98.47350 * 13 11 10 45 45 H 1.08991 * 110.41715 * 336.03027 * 13 11 10 46 46 H 1.08998 * 109.47412 * 294.71116 * 15 14 13 47 47 H 1.09004 * 109.47004 * 54.71189 * 15 14 13 48 48 H 0.97001 * 120.00133 * 0.02562 * 18 16 15 49 49 H 0.97003 * 120.00198 * 179.97438 * 22 21 19 50 50 H 1.09005 * 110.41238 * 201.73760 * 27 14 13 51 51 H 1.08996 * 110.51325 * 79.34276 * 27 14 13 52 52 H 0.96698 * 114.00006 * 178.51066 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6530 -2.1998 1.1783 6 1 0.5802 -2.2868 1.0065 7 6 2.0157 -2.8858 2.4969 8 6 2.3980 -2.8601 0.0469 9 8 3.1635 -2.2120 -0.6351 10 7 2.2146 -4.1711 -0.2064 11 6 2.9384 -4.8129 -1.3065 12 1 3.9203 -4.3566 -1.4318 13 6 2.1271 -4.7077 -2.6157 14 7 2.3639 -6.0008 -3.3079 15 6 1.3089 -6.2711 -4.2936 16 6 1.6495 -7.5207 -5.0641 17 8 2.6705 -8.1267 -4.8160 18 7 0.8198 -7.9648 -6.0288 19 6 1.1294 -9.1019 -6.7293 20 1 2.0385 -9.6414 -6.5084 21 6 0.2737 -9.5600 -7.7235 22 7 -0.8322 -8.9032 -7.9926 23 14 0.6960 -11.1090 -8.6786 24 1 1.9859 -11.6568 -8.1877 25 1 -0.3760 -12.1181 -8.4840 26 1 0.8133 -10.7835 -10.1227 27 6 2.3431 -7.0081 -2.2161 28 6 3.0805 -6.3263 -1.0436 29 1 4.1322 -6.6128 -1.0399 30 8 2.4673 -6.6760 0.1989 31 1 -0.3634 0.4322 0.9323 32 1 -0.3633 0.5914 -0.8405 33 1 -0.3634 -1.0236 -0.0919 34 1 1.8934 -0.5139 -0.8899 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 1.5938 -0.2712 2.1362 39 1 3.1249 -0.6317 1.3031 40 1 1.5470 -2.3533 3.3245 41 1 1.6605 -3.9162 2.4801 42 1 3.0981 -2.8768 2.6255 43 1 1.6027 -4.6895 0.3393 44 1 2.4915 -3.8792 -3.2231 45 1 1.0668 -4.5822 -2.3969 46 1 0.3578 -6.4093 -3.7794 47 1 1.2308 -5.4297 -4.9821 48 1 0.0035 -7.4800 -6.2275 49 1 -1.4295 -9.2228 -8.6870 50 1 2.8701 -7.9118 -2.5226 51 1 1.3172 -7.2445 -1.9340 52 1 2.5064 -7.6200 0.4049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220626454.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:15 Heat of formation + Delta-G solvation = -130.891874 kcal Electronic energy + Delta-G solvation = -30697.278835 eV Core-core repulsion = 26503.214767 eV Total energy + Delta-G solvation = -4194.064067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.53971 -39.27253 -37.94135 -36.60299 -35.81805 -34.39741 -33.86562 -33.14126 -31.29770 -30.16561 -28.04759 -27.38743 -26.85016 -26.51791 -24.41197 -23.50855 -21.51455 -20.81914 -20.39928 -19.96703 -19.20404 -17.91558 -17.72473 -17.21471 -16.16833 -16.08618 -15.68289 -15.18249 -15.04576 -14.93676 -14.71580 -14.46113 -14.11444 -14.03674 -13.74910 -13.64037 -13.41047 -13.03854 -12.92372 -12.87489 -12.59598 -12.44461 -12.22969 -12.13829 -12.01237 -11.92448 -11.65578 -11.55620 -11.45382 -11.34239 -11.11506 -10.88601 -10.85555 -10.67483 -10.65211 -10.36233 -10.25017 -10.10838 -9.70568 -9.52805 -9.11545 -8.58451 -8.09431 -7.97725 -6.43866 -3.84812 2.55871 2.94805 3.14516 3.25295 3.32306 3.85539 3.88279 4.10287 4.29298 4.37736 4.53205 4.58373 4.59979 4.61504 4.84089 4.97647 5.06323 5.06694 5.11038 5.14176 5.22160 5.27105 5.34555 5.42190 5.42841 5.50592 5.59206 5.60665 5.64322 5.67353 5.71146 5.74320 5.79711 5.82160 5.88632 5.94029 5.96956 6.04489 6.16464 6.20906 6.22434 6.30502 6.40048 6.95349 7.08241 7.40731 7.49517 7.53239 8.03761 8.18724 8.59036 9.15802 9.51838 10.03258 10.73937 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018515 B = 0.002112 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.947517 B =13257.112087 C =14172.037596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.143 4.143 4 C -0.092 4.092 5 C -0.114 4.114 6 H 0.097 0.903 7 C -0.144 4.144 8 C 0.516 3.484 9 O -0.538 6.538 10 N -0.710 5.710 11 C 0.151 3.849 12 H 0.105 0.895 13 C 0.020 3.980 14 N -0.478 5.478 15 C 0.036 3.964 16 C 0.445 3.555 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.006 3.994 28 C 0.094 3.906 29 H 0.078 0.922 30 O -0.567 6.567 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.408 0.592 44 H 0.089 0.911 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.091 0.909 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.105 0.895 51 H 0.049 0.951 52 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 14.194 21.139 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.200 4.200 4 C -0.130 4.130 5 C -0.135 4.135 6 H 0.115 0.885 7 C -0.201 4.201 8 C 0.302 3.698 9 O -0.415 6.415 10 N -0.363 5.363 11 C 0.045 3.955 12 H 0.123 0.877 13 C -0.109 4.109 14 N -0.202 5.202 15 C -0.096 4.096 16 C 0.230 3.770 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.123 4.123 28 C 0.034 3.966 29 H 0.096 0.904 30 O -0.374 6.374 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.245 0.755 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.110 0.890 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.123 0.877 51 H 0.068 0.932 52 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.220 14.824 20.394 25.310 hybrid contribution -1.537 -1.381 -0.211 2.077 sum 0.683 13.444 20.183 24.260 Atomic orbital electron populations 1.21916 0.95824 1.01392 1.01489 1.21259 0.95091 0.96370 0.99699 1.21777 1.01076 0.95964 1.01186 1.21477 1.01823 0.91860 0.97868 1.21421 1.01192 0.96727 0.94167 0.88475 1.21772 1.02341 1.00562 0.95444 1.20697 0.82236 0.81820 0.85022 1.90679 1.37196 1.63256 1.50342 1.45824 1.46713 1.09709 1.34005 1.21715 0.97124 0.90702 0.85926 0.87674 1.23610 0.98600 0.94255 0.94470 1.65111 1.43701 1.00848 1.10583 1.22072 0.92577 0.99199 0.95753 1.19655 0.86045 0.87211 0.84067 1.90497 1.26859 1.59631 1.69294 1.41864 1.21609 1.24967 1.31660 1.19738 1.07480 1.01680 1.13840 0.87851 1.25271 0.95407 0.99550 0.97792 1.69621 1.11765 1.40123 1.32786 0.85799 0.78605 0.80852 0.79080 1.19220 1.20789 1.20717 1.23921 0.99997 0.97837 0.90523 1.22864 0.96846 0.93742 0.83195 0.90416 1.86241 1.81671 1.30800 1.38641 0.92953 0.92821 0.92959 0.89340 0.92691 0.92935 0.93212 0.91591 0.91135 0.91546 0.91878 0.92146 0.75489 0.89228 0.93396 0.93162 0.89040 0.77496 0.91908 0.87675 0.93248 0.76547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.85 37.16 0.33 -0.84 16 2 C -0.11 -0.97 2.72 -90.62 -0.25 -1.22 16 3 C -0.14 -1.19 9.19 37.16 0.34 -0.85 16 4 C -0.09 -0.77 3.78 -26.73 -0.10 -0.87 16 5 C -0.11 -0.92 2.62 -91.77 -0.24 -1.16 16 6 H 0.10 0.69 6.42 -51.93 -0.33 0.36 16 7 C -0.14 -0.94 9.05 37.16 0.34 -0.60 16 8 C 0.52 5.78 6.83 -10.99 -0.07 5.71 16 9 O -0.54 -7.82 13.75 5.55 0.08 -7.74 16 10 N -0.71 -7.52 4.75 -52.47 -0.25 -7.77 16 11 C 0.15 1.87 3.41 -66.55 -0.23 1.65 16 12 H 0.11 1.43 7.56 -51.93 -0.39 1.04 16 13 C 0.02 0.27 6.20 -2.18 -0.01 0.26 16 14 N -0.48 -7.89 5.06 -231.41 -1.17 -9.06 16 15 C 0.04 0.64 5.30 -4.98 -0.03 0.61 16 16 C 0.45 10.39 7.59 -10.99 -0.08 10.31 16 17 O -0.58 -15.32 14.42 5.55 0.08 -15.24 16 18 N -0.56 -14.21 5.29 -10.97 -0.06 -14.26 16 19 C -0.30 -8.24 9.68 -14.94 -0.14 -8.38 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 23 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.01 0.08 5.53 -2.18 -0.01 0.07 16 28 C 0.09 1.09 4.42 -25.34 -0.11 0.97 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 O -0.57 -5.26 11.54 -35.23 -0.41 -5.67 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.41 6.70 -51.93 -0.35 0.06 16 34 H 0.09 1.05 6.02 -51.93 -0.31 0.74 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.68 7.90 -51.93 -0.41 0.27 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.38 7.71 -51.92 -0.40 -0.02 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.41 3.83 6.78 -40.82 -0.28 3.55 16 44 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 46 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 47 H 0.09 1.52 8.13 -51.93 -0.42 1.09 16 48 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 49 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 50 H 0.11 1.82 6.91 -51.93 -0.36 1.46 16 51 H 0.05 0.72 7.76 -51.93 -0.40 0.31 16 52 H 0.39 2.29 9.11 45.56 0.42 2.70 16 LS Contribution 410.98 15.07 6.19 6.19 Total: -1.00 -32.45 410.98 -8.33 -40.78 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -8.12 Total: 14.45 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -0.37 Total: 6.14 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.75 Total: -54.81 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.25 Total: -28.66 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.45 -8.33 -40.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220626454.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.109 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds