Wall clock time and date at job start Wed Apr 1 2020 00:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47336 * 2 1 4 4 O 1.42898 * 109.47263 * 120.00332 * 2 1 3 5 5 C 1.42895 * 114.00327 * 150.00278 * 4 2 1 6 6 C 1.50702 * 109.47345 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99854 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00204 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99710 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46639 * 180.02562 * 9 8 6 11 11 C 1.53120 * 109.52342 * 174.99791 * 10 9 8 12 12 C 1.53041 * 109.28182 * 177.61945 * 11 10 9 13 13 N 1.46849 * 109.52442 * 300.82868 * 12 11 10 14 14 C 1.46901 * 110.99649 * 185.83742 * 13 12 11 15 15 C 1.50701 * 109.46921 * 169.99608 * 14 13 12 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46986 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47457 * 119.99901 * 22 20 18 25 25 H 1.48501 * 109.47104 * 239.99973 * 22 20 18 26 26 C 1.46839 * 111.20047 * 61.73811 * 13 12 11 27 27 C 1.53034 * 109.52552 * 298.25821 * 26 13 12 28 28 H 1.08992 * 109.47347 * 299.99888 * 1 2 3 29 29 H 1.09004 * 109.47027 * 60.00307 * 1 2 3 30 30 H 1.09001 * 109.46842 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47146 * 240.00201 * 2 1 3 32 32 H 1.08997 * 109.47637 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.47142 * 300.00242 * 3 2 1 34 34 H 1.09001 * 109.47025 * 59.99578 * 3 2 1 35 35 H 1.09003 * 109.47567 * 59.99913 * 5 4 2 36 36 H 1.08998 * 109.47044 * 299.99459 * 5 4 2 37 37 H 0.96996 * 119.99786 * 0.02562 * 8 6 5 38 38 H 1.08995 * 109.47031 * 60.00903 * 9 8 6 39 39 H 1.08998 * 109.47104 * 300.00204 * 9 8 6 40 40 H 1.09005 * 109.52438 * 54.87293 * 10 9 8 41 41 H 1.09005 * 109.50142 * 57.68728 * 11 10 9 42 42 H 1.08998 * 109.50777 * 297.56625 * 11 10 9 43 43 H 1.08991 * 109.46218 * 180.80508 * 12 11 10 44 44 H 1.09005 * 109.44695 * 60.83538 * 12 11 10 45 45 H 1.09002 * 109.47401 * 49.99636 * 14 13 12 46 46 H 1.09001 * 109.46874 * 289.99649 * 14 13 12 47 47 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 48 48 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 49 49 H 1.09006 * 109.46266 * 58.27078 * 26 13 12 50 50 H 1.09002 * 109.46276 * 178.24270 * 26 13 12 51 51 H 1.09006 * 109.50444 * 299.24199 * 27 26 13 52 52 H 1.09003 * 109.50687 * 179.12283 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2659 -1.3245 0.9886 6 6 3.6699 -1.9978 2.2749 7 8 2.9496 -1.9278 3.2482 8 7 4.8310 -2.6788 2.3434 9 6 5.2232 -3.3339 3.5937 10 6 6.5720 -4.0305 3.4029 11 6 7.0427 -4.6091 4.7402 12 6 8.3624 -5.3554 4.5314 13 7 8.1674 -6.4328 3.5529 14 6 9.3768 -7.2577 3.4302 15 6 9.0664 -8.4858 2.6138 16 8 7.9480 -8.6568 2.1768 17 7 10.0320 -9.3937 2.3685 18 6 9.7497 -10.5107 1.6254 19 1 8.7536 -10.6633 1.2369 20 6 10.7449 -11.4468 1.3729 21 7 11.9569 -11.2613 1.8461 22 14 10.3607 -12.9684 0.3598 23 1 8.9345 -12.9411 -0.0529 24 1 11.2253 -12.9908 -0.8473 25 1 10.6166 -14.1832 1.1746 26 6 7.7610 -5.8974 2.2474 27 6 6.4234 -5.1674 2.3880 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 4.0200 -0.5873 0.7125 36 1 3.1809 -2.0707 0.1986 37 1 5.4068 -2.7352 1.5648 38 1 4.4692 -4.0708 3.8698 39 1 5.3086 -2.5876 4.3836 40 1 7.3054 -3.3109 3.0390 41 1 6.2910 -5.2995 5.1228 42 1 7.1915 -3.7996 5.4548 43 1 8.6930 -5.7807 5.4789 44 1 9.1173 -4.6613 4.1618 45 1 9.7148 -7.5569 4.4224 46 1 10.1606 -6.6824 2.9375 47 1 10.9264 -9.2567 2.7178 48 1 12.6517 -11.9147 1.6695 49 1 8.5189 -5.2009 1.8886 50 1 7.6547 -6.7164 1.5360 51 1 5.6618 -5.8664 2.7336 52 1 6.1296 -4.7566 1.4219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222547693.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:41 Heat of formation + Delta-G solvation = -128.074529 kcal Electronic energy + Delta-G solvation = -29421.884531 eV Core-core repulsion = 25227.942633 eV Total energy + Delta-G solvation = -4193.941898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.18511 -39.29278 -38.38653 -37.69319 -35.46654 -33.93581 -33.23648 -32.90170 -31.24533 -30.69634 -29.23124 -27.79284 -27.41098 -25.57681 -24.01103 -23.12785 -21.81003 -21.70362 -20.86583 -19.66952 -19.19087 -17.86337 -17.52071 -17.42276 -16.45080 -16.05583 -15.80530 -15.58724 -15.14851 -15.01234 -14.84636 -14.61142 -14.19756 -14.01020 -13.86957 -13.80710 -13.59362 -13.29248 -13.05050 -12.99967 -12.68664 -12.60550 -12.41090 -12.34559 -12.19935 -11.85530 -11.84964 -11.50725 -11.38769 -11.16806 -11.09066 -11.05671 -10.74433 -10.47366 -10.35961 -10.26437 -10.22517 -10.09127 -9.97069 -9.48028 -9.29351 -8.42694 -7.97868 -7.82712 -6.42444 -3.83159 2.37557 2.50587 3.15445 3.26159 3.33194 3.60108 3.89933 3.99526 4.24009 4.33939 4.50355 4.55474 4.60955 4.69136 4.70666 4.73504 4.74749 4.82174 5.06995 5.15985 5.23613 5.25854 5.28222 5.32029 5.35041 5.41140 5.42647 5.49140 5.54413 5.65037 5.73414 5.74093 5.78856 5.79292 5.83004 5.87769 6.00846 6.04190 6.14875 6.19494 6.28098 6.43909 6.50291 6.69809 7.22560 7.31897 7.45257 7.54813 7.97771 8.06368 8.61463 9.17801 9.54310 10.06100 10.75374 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017467 B = 0.001670 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.599033 B =16763.765643 C =17908.447036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.176 4.176 4 O -0.358 6.358 5 C 0.043 3.957 6 C 0.512 3.488 7 O -0.520 6.520 8 N -0.727 5.727 9 C 0.127 3.873 10 C -0.101 4.101 11 C -0.106 4.106 12 C 0.056 3.944 13 N -0.515 5.515 14 C 0.046 3.954 15 C 0.444 3.556 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.052 3.948 27 C -0.107 4.107 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.401 0.599 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.028 0.972 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.020 0.980 50 H 0.104 0.896 51 H 0.076 0.924 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.398 23.596 -1.892 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.037 4.037 6 C 0.297 3.703 7 O -0.395 6.395 8 N -0.381 5.381 9 C 0.004 3.996 10 C -0.120 4.120 11 C -0.144 4.144 12 C -0.072 4.072 13 N -0.240 5.240 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.461 6.461 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.075 4.075 27 C -0.144 4.144 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.038 0.962 50 H 0.122 0.878 51 H 0.095 0.905 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.014 23.112 -1.141 26.549 hybrid contribution 1.780 -0.218 -1.195 2.155 sum -11.234 22.894 -2.335 25.608 Atomic orbital electron populations 1.21854 0.93201 1.03016 1.02645 1.22186 0.95437 0.92467 0.87842 1.22317 1.01485 0.96737 1.02843 1.88069 1.34555 1.69695 1.35288 1.22235 0.88299 0.97186 0.95946 1.20239 0.81254 0.79069 0.89757 1.90741 1.51611 1.59518 1.37614 1.45921 1.22156 1.54401 1.15653 1.21448 0.96279 0.96347 0.85490 1.21500 0.95511 0.97372 0.97603 1.21523 0.97891 0.99304 0.95692 1.22081 0.96094 0.92454 0.96600 1.61492 1.32947 1.20583 1.08956 1.21835 0.91052 0.94671 1.00943 1.19763 0.86100 0.85525 0.85678 1.90482 1.22059 1.77970 1.55607 1.41882 1.11326 1.19632 1.47338 1.19747 0.98183 0.97183 1.27638 0.87866 1.25253 0.94874 0.99579 0.98256 1.69622 1.01918 1.36980 1.45832 0.85810 0.78729 0.80790 0.79074 1.19237 1.20813 1.20757 1.22246 0.94757 0.98772 0.91737 1.21618 0.98712 0.96424 0.97693 0.91582 0.91102 0.91791 0.91959 0.92508 0.91457 0.91564 0.90418 0.90148 0.76470 0.91009 0.91473 0.90977 0.90495 0.91463 0.90670 0.95353 0.89383 0.93626 0.77522 0.91955 0.96234 0.87792 0.90522 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.56 37.15 0.36 -0.59 16 2 C 0.08 0.54 3.34 -26.73 -0.09 0.45 16 3 C -0.18 -1.01 9.53 37.16 0.35 -0.66 16 4 O -0.36 -3.70 9.52 -55.14 -0.52 -4.23 16 5 C 0.04 0.34 6.23 36.01 0.22 0.57 16 6 C 0.51 5.63 7.91 -10.98 -0.09 5.54 16 7 O -0.52 -8.22 16.50 -14.35 -0.24 -8.46 16 8 N -0.73 -6.34 5.31 -60.30 -0.32 -6.66 16 9 C 0.13 1.25 5.07 -4.04 -0.02 1.23 16 10 C -0.10 -0.97 2.29 -90.50 -0.21 -1.18 16 11 C -0.11 -1.09 5.38 -26.65 -0.14 -1.23 16 12 C 0.06 0.68 5.46 -3.83 -0.02 0.66 16 13 N -0.52 -8.22 4.40 -236.11 -1.04 -9.26 16 14 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 15 C 0.44 10.26 7.46 -10.98 -0.08 10.18 16 16 O -0.58 -15.18 13.90 5.55 0.08 -15.10 16 17 N -0.57 -14.11 5.29 -10.96 -0.06 -14.17 16 18 C -0.30 -8.21 9.68 -14.94 -0.14 -8.36 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 22 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 26 C 0.05 0.80 5.10 -3.84 -0.02 0.78 16 27 C -0.11 -1.27 5.23 -26.65 -0.14 -1.41 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.33 7.79 -51.93 -0.40 -0.07 16 32 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.42 7.87 -51.93 -0.41 0.01 16 36 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 37 H 0.40 2.45 7.69 -40.82 -0.31 2.13 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.86 8.01 -51.93 -0.42 0.45 16 44 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 1.40 7.99 -51.93 -0.41 0.98 16 46 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 47 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.10 1.98 5.78 -51.93 -0.30 1.68 16 51 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 52 H 0.06 0.60 7.27 -51.93 -0.38 0.22 16 LS Contribution 417.71 15.07 6.29 6.29 Total: -1.00 -34.41 417.71 -9.46 -43.87 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -9.22 Total: 8.22 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -0.14 Total: 7.25 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.69 Total: -53.70 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.68 Total: -27.79 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.41 -9.46 -43.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222547693.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.204 kcal (2) G-P(sol) polarization free energy of solvation -34.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds