Wall clock time and date at job start Wed Apr 1 2020 00:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47336 * 2 1 4 4 O 1.42898 * 109.47263 * 120.00332 * 2 1 3 5 5 C 1.42895 * 114.00327 * 150.00278 * 4 2 1 6 6 C 1.50702 * 109.47345 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99854 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00204 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99710 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46639 * 180.02562 * 9 8 6 11 11 C 1.53120 * 109.52342 * 174.99791 * 10 9 8 12 12 C 1.53041 * 109.28182 * 177.61945 * 11 10 9 13 13 N 1.46849 * 109.52442 * 300.82868 * 12 11 10 14 14 C 1.46901 * 110.99649 * 185.83742 * 13 12 11 15 15 C 1.50701 * 109.46921 * 169.99608 * 14 13 12 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46986 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47457 * 119.99901 * 22 20 18 25 25 H 1.48501 * 109.47104 * 239.99973 * 22 20 18 26 26 C 1.46839 * 111.20047 * 61.73811 * 13 12 11 27 27 C 1.53034 * 109.52552 * 298.25821 * 26 13 12 28 28 H 1.08992 * 109.47347 * 299.99888 * 1 2 3 29 29 H 1.09004 * 109.47027 * 60.00307 * 1 2 3 30 30 H 1.09001 * 109.46842 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47146 * 240.00201 * 2 1 3 32 32 H 1.08997 * 109.47637 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.47142 * 300.00242 * 3 2 1 34 34 H 1.09001 * 109.47025 * 59.99578 * 3 2 1 35 35 H 1.09003 * 109.47567 * 59.99913 * 5 4 2 36 36 H 1.08998 * 109.47044 * 299.99459 * 5 4 2 37 37 H 0.96996 * 119.99786 * 0.02562 * 8 6 5 38 38 H 1.08995 * 109.47031 * 60.00903 * 9 8 6 39 39 H 1.08998 * 109.47104 * 300.00204 * 9 8 6 40 40 H 1.09005 * 109.52438 * 54.87293 * 10 9 8 41 41 H 1.09005 * 109.50142 * 57.68728 * 11 10 9 42 42 H 1.08998 * 109.50777 * 297.56625 * 11 10 9 43 43 H 1.08991 * 109.46218 * 180.80508 * 12 11 10 44 44 H 1.09005 * 109.44695 * 60.83538 * 12 11 10 45 45 H 1.09002 * 109.47401 * 49.99636 * 14 13 12 46 46 H 1.09001 * 109.46874 * 289.99649 * 14 13 12 47 47 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 48 48 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 49 49 H 1.09006 * 109.46266 * 58.27078 * 26 13 12 50 50 H 1.09002 * 109.46276 * 178.24270 * 26 13 12 51 51 H 1.09006 * 109.50444 * 299.24199 * 27 26 13 52 52 H 1.09003 * 109.50687 * 179.12283 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2659 -1.3245 0.9886 6 6 3.6699 -1.9978 2.2749 7 8 2.9496 -1.9278 3.2482 8 7 4.8310 -2.6788 2.3434 9 6 5.2232 -3.3339 3.5937 10 6 6.5720 -4.0305 3.4029 11 6 7.0427 -4.6091 4.7402 12 6 8.3624 -5.3554 4.5314 13 7 8.1674 -6.4328 3.5529 14 6 9.3768 -7.2577 3.4302 15 6 9.0664 -8.4858 2.6138 16 8 7.9480 -8.6568 2.1768 17 7 10.0320 -9.3937 2.3685 18 6 9.7497 -10.5107 1.6254 19 1 8.7536 -10.6633 1.2369 20 6 10.7449 -11.4468 1.3729 21 7 11.9569 -11.2613 1.8461 22 14 10.3607 -12.9684 0.3598 23 1 8.9345 -12.9411 -0.0529 24 1 11.2253 -12.9908 -0.8473 25 1 10.6166 -14.1832 1.1746 26 6 7.7610 -5.8974 2.2474 27 6 6.4234 -5.1674 2.3880 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 4.0200 -0.5873 0.7125 36 1 3.1809 -2.0707 0.1986 37 1 5.4068 -2.7352 1.5648 38 1 4.4692 -4.0708 3.8698 39 1 5.3086 -2.5876 4.3836 40 1 7.3054 -3.3109 3.0390 41 1 6.2910 -5.2995 5.1228 42 1 7.1915 -3.7996 5.4548 43 1 8.6930 -5.7807 5.4789 44 1 9.1173 -4.6613 4.1618 45 1 9.7148 -7.5569 4.4224 46 1 10.1606 -6.6824 2.9375 47 1 10.9264 -9.2567 2.7178 48 1 12.6517 -11.9147 1.6695 49 1 8.5189 -5.2009 1.8886 50 1 7.6547 -6.7164 1.5360 51 1 5.6618 -5.8664 2.7336 52 1 6.1296 -4.7566 1.4219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222547693.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:40 Heat of formation + Delta-G solvation = -153.490443 kcal Electronic energy + Delta-G solvation = -29422.986648 eV Core-core repulsion = 25227.942633 eV Total energy + Delta-G solvation = -4195.044015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.06196 -40.54946 -39.41081 -38.87377 -36.55692 -35.83748 -34.08291 -33.65540 -33.22543 -31.71191 -30.20527 -28.71084 -28.05568 -26.97482 -25.50973 -24.14278 -22.78438 -22.24664 -21.70062 -21.00809 -20.59430 -19.85487 -18.27330 -18.06000 -17.71155 -17.14325 -16.78108 -16.60425 -16.48675 -16.32468 -15.81563 -15.68654 -15.55357 -15.29599 -15.13254 -14.88696 -14.62125 -14.22635 -13.93639 -13.88792 -13.63746 -13.53772 -13.44293 -13.25364 -13.08099 -13.06233 -12.89428 -12.83629 -12.55225 -12.39416 -12.35362 -12.12577 -12.07215 -11.67312 -11.65222 -11.54359 -11.41452 -11.24138 -10.85585 -10.64693 -10.21859 -10.11151 -9.97467 -9.10889 -8.45483 -5.93767 1.36673 1.41935 1.55792 1.56012 1.83572 2.07882 2.29228 2.82702 3.01291 3.21660 3.42225 3.67687 3.75101 3.81564 3.93679 4.02040 4.09871 4.20783 4.25900 4.28624 4.32040 4.33401 4.37684 4.43605 4.52299 4.58432 4.62537 4.67683 4.73529 4.75260 4.82230 4.89689 4.91337 4.93335 4.94028 5.04812 5.10210 5.25296 5.27799 5.28808 5.33005 5.36840 5.42355 5.52447 5.94205 6.15466 6.16255 6.34989 6.54407 6.62909 7.15070 7.21526 7.59062 8.15230 8.72136 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017467 B = 0.001670 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.599033 B =16763.765643 C =17908.447036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 C -0.173 4.173 4 O -0.394 6.394 5 C 0.044 3.956 6 C 0.507 3.493 7 O -0.578 6.578 8 N -0.713 5.713 9 C 0.133 3.867 10 C -0.085 4.085 11 C -0.105 4.105 12 C 0.056 3.944 13 N -0.538 5.538 14 C 0.058 3.942 15 C 0.441 3.559 16 O -0.614 6.614 17 N -0.576 5.576 18 C -0.331 4.331 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.991 3.009 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.272 1.272 26 C 0.054 3.946 27 C -0.100 4.100 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.417 0.583 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.037 0.963 50 H 0.057 0.943 51 H 0.048 0.952 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 25.272 -2.709 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 C -0.231 4.231 4 O -0.314 6.314 5 C -0.035 4.035 6 C 0.294 3.706 7 O -0.457 6.457 8 N -0.368 5.368 9 C 0.009 3.991 10 C -0.104 4.104 11 C -0.143 4.143 12 C -0.071 4.071 13 N -0.264 5.264 14 C -0.073 4.073 15 C 0.229 3.771 16 O -0.500 6.500 17 N -0.213 5.213 18 C -0.460 4.460 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.073 4.073 27 C -0.138 4.138 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.125 0.875 46 H 0.084 0.916 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.055 0.945 50 H 0.076 0.924 51 H 0.067 0.933 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.890 24.803 -1.974 27.576 hybrid contribution 1.418 -0.716 -0.936 1.844 sum -10.473 24.086 -2.910 26.425 Atomic orbital electron populations 1.21895 0.93299 1.02563 1.03073 1.22411 0.95522 0.93061 0.87566 1.22300 1.01820 0.95989 1.02978 1.88033 1.35691 1.70360 1.37315 1.22377 0.88384 0.98303 0.94448 1.20901 0.80934 0.78565 0.90217 1.90714 1.53392 1.61768 1.39782 1.45817 1.21798 1.53238 1.15897 1.21304 0.95711 0.95917 0.86132 1.21371 0.95815 0.96605 0.96618 1.21542 0.96562 0.99632 0.96543 1.22190 0.97495 0.91706 0.95735 1.61462 1.32438 1.22470 1.10025 1.21703 0.92345 0.92477 1.00758 1.20836 0.85072 0.86432 0.84798 1.90464 1.23613 1.79046 1.56831 1.41949 1.11915 1.19715 1.47758 1.19681 0.97648 0.99157 1.29552 0.90408 1.25999 0.94552 1.01837 0.98853 1.69679 1.02403 1.37924 1.46211 0.84892 0.78190 0.77425 0.77955 1.19899 1.19573 1.19743 1.22130 0.96865 0.97645 0.90697 1.21547 0.96130 0.96507 0.99566 0.92949 0.88871 0.92674 0.89945 0.91936 0.89664 0.93066 0.87416 0.87708 0.74604 0.93132 0.91215 0.88645 0.92172 0.88736 0.89916 0.93516 0.87466 0.91581 0.77083 0.91378 0.94471 0.92407 0.93305 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.56 71.98 0.69 -1.11 16 2 C 0.07 0.88 3.34 30.59 0.10 0.98 16 3 C -0.17 -1.70 9.53 71.98 0.69 -1.01 16 4 O -0.39 -7.88 9.52 -129.94 -1.24 -9.11 16 5 C 0.04 0.61 6.23 71.24 0.44 1.06 16 6 C 0.51 10.69 7.91 87.66 0.69 11.38 16 7 O -0.58 -18.59 16.50 16.00 0.26 -18.33 16 8 N -0.71 -11.12 5.31 -463.06 -2.46 -13.58 16 9 C 0.13 2.42 5.07 86.38 0.44 2.86 16 10 C -0.09 -1.44 2.29 -10.71 -0.02 -1.46 16 11 C -0.10 -1.90 5.38 30.65 0.16 -1.74 16 12 C 0.06 1.20 5.46 86.33 0.47 1.67 16 13 N -0.54 -16.63 4.40 -900.93 -3.96 -20.59 16 14 C 0.06 1.98 5.45 85.56 0.47 2.44 16 15 C 0.44 20.81 7.46 87.66 0.65 21.47 16 16 O -0.61 -33.57 13.90 -3.07 -0.04 -33.61 16 17 N -0.58 -29.38 5.29 -306.98 -1.62 -31.01 16 18 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 19 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 20 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 21 N -0.92 -49.49 13.05 21.66 0.28 -49.20 16 22 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 C 0.05 1.61 5.10 86.33 0.44 2.05 16 27 C -0.10 -2.28 5.23 30.65 0.16 -2.12 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.66 7.79 -2.38 -0.02 0.64 16 32 H 0.06 0.53 7.87 -2.39 -0.02 0.51 16 33 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.11 0.83 7.87 -2.39 -0.02 0.81 16 36 H 0.11 0.92 8.08 -2.39 -0.02 0.90 16 37 H 0.42 3.84 7.69 -92.71 -0.71 3.13 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.66 8.01 -2.39 -0.02 1.65 16 44 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.11 3.22 7.99 -2.39 -0.02 3.20 16 46 H 0.07 1.98 8.12 -2.39 -0.02 1.97 16 47 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 48 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 49 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 50 H 0.06 2.27 5.78 -2.39 -0.01 2.26 16 51 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 52 H 0.08 1.47 7.27 -2.39 -0.02 1.46 16 Total: -1.00 -78.64 417.71 -0.62 -79.26 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.53 Total: 32.92 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 6.66 Total: 18.32 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -7.76 Total: -114.38 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: -1.02 Total: -61.05 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -78.64 -0.62 -79.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222547693.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.233 kcal (2) G-P(sol) polarization free energy of solvation -78.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds