Wall clock time and date at job start Wed Apr 1 2020 00:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47179 * 2 1 4 4 O 1.42902 * 109.47296 * 179.97438 * 3 2 1 5 5 C 1.42895 * 114.00264 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47301 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99964 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00259 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00341 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.46909 * 35.00148 * 9 8 6 11 11 C 1.52997 * 109.46940 * 274.99874 * 9 8 6 12 12 C 1.52995 * 109.46917 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47185 * 60.00313 * 12 11 9 14 14 C 1.53006 * 109.46607 * 299.99945 * 13 12 11 15 15 C 1.52995 * 109.47303 * 60.00127 * 14 13 12 16 16 H 1.09000 * 109.47126 * 59.99439 * 15 14 13 17 17 N 1.46898 * 109.47180 * 179.97438 * 15 14 13 18 18 C 1.46903 * 110.99849 * 274.99846 * 17 15 14 19 19 C 1.50699 * 109.47398 * 179.97438 * 18 17 15 20 20 O 1.21297 * 119.99867 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00325 * 180.02562 * 19 18 17 22 22 C 1.37092 * 119.99974 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00583 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00110 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00245 * 179.72419 * 24 22 21 26 26 Si 1.86803 * 119.99625 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47085 * 89.99660 * 26 24 22 28 28 H 1.48497 * 109.46789 * 209.99669 * 26 24 22 29 29 H 1.48490 * 109.47245 * 329.99818 * 26 24 22 30 30 H 1.08995 * 109.47115 * 299.99741 * 1 2 3 31 31 H 1.09006 * 109.47456 * 59.99796 * 1 2 3 32 32 H 1.08997 * 109.47491 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47181 * 240.00878 * 2 1 3 34 34 H 1.09000 * 109.47372 * 120.00637 * 2 1 3 35 35 H 1.09002 * 109.47026 * 60.00447 * 3 2 1 36 36 H 1.09000 * 109.47489 * 300.00565 * 3 2 1 37 37 H 1.09004 * 109.47008 * 60.00555 * 5 4 3 38 38 H 1.08997 * 109.47216 * 300.00721 * 5 4 3 39 39 H 0.97000 * 119.99925 * 359.97438 * 8 6 5 40 40 H 1.08997 * 109.46777 * 60.00281 * 11 9 8 41 41 H 1.08993 * 109.47192 * 300.00045 * 11 9 8 42 42 H 1.09005 * 109.47551 * 300.00524 * 12 11 9 43 43 H 1.09002 * 109.47437 * 180.02562 * 12 11 9 44 44 H 1.08999 * 109.47198 * 180.02562 * 13 12 11 45 45 H 1.08993 * 109.47069 * 59.99615 * 13 12 11 46 46 H 1.08999 * 109.47030 * 299.99172 * 14 13 12 47 47 H 1.09001 * 109.46367 * 180.02562 * 14 13 12 48 48 H 1.00898 * 111.00544 * 151.04713 * 17 15 14 49 49 H 1.09005 * 109.47310 * 59.99621 * 18 17 15 50 50 H 1.08999 * 109.47201 * 300.00515 * 18 17 15 51 51 H 0.97005 * 119.99841 * 0.02562 * 21 19 18 52 52 H 0.97000 * 120.00281 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7479 0.0012 6 6 5.5525 2.6289 0.0012 7 8 6.0740 1.5340 0.0002 8 7 6.3164 3.7393 0.0023 9 6 7.7769 3.6236 0.0017 10 1 8.0724 2.7564 -0.5889 11 6 8.2758 3.4564 1.4383 12 6 9.8009 3.3349 1.4376 13 6 10.4129 4.5984 0.8291 14 6 9.9139 4.7656 -0.6076 15 6 8.3887 4.8870 -0.6069 16 1 8.0936 5.7544 -0.0164 17 7 7.9097 5.0482 -1.9862 18 6 7.9587 6.4571 -2.3993 19 6 7.4616 6.5828 -3.8163 20 8 7.1023 5.5957 -4.4228 21 7 7.4172 7.7918 -4.4102 22 6 6.9654 7.9060 -5.6995 23 1 6.6447 7.0272 -6.2393 24 6 6.9191 9.1526 -6.3117 25 7 6.4912 9.2613 -7.5493 26 14 7.4731 10.6727 -5.3779 27 1 8.9244 10.8912 -5.6044 28 1 6.7134 11.8540 -5.8603 29 1 7.2219 10.4813 -3.9270 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.7283 3.2885 0.8913 38 1 3.7289 3.2892 -0.8886 39 1 5.8993 4.6150 0.0027 40 1 7.8402 2.5561 1.8716 41 1 7.9803 4.3235 2.0288 42 1 10.0962 2.4676 0.8471 43 1 10.1564 3.2153 2.4611 44 1 11.4994 4.5117 0.8282 45 1 10.1177 5.4657 1.4195 46 1 10.2092 3.8983 -1.1980 47 1 10.3502 5.6654 -1.0412 48 1 6.9793 4.6725 -2.0922 49 1 8.9859 6.8172 -2.3416 50 1 7.3279 7.0516 -1.7384 51 1 7.7055 8.5811 -3.9256 52 1 6.4592 10.1315 -7.9768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225211273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:16 Heat of formation + Delta-G solvation = -132.774114 kcal Electronic energy + Delta-G solvation = -30175.445409 eV Core-core repulsion = 25981.299721 eV Total energy + Delta-G solvation = -4194.145687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43566 -38.97838 -38.26579 -37.65366 -34.81187 -34.32269 -33.96099 -33.82618 -31.69345 -30.38087 -29.69215 -28.03857 -26.33403 -25.76414 -23.94314 -22.72907 -21.87377 -21.63316 -20.69258 -20.01634 -19.40537 -18.42082 -17.47963 -17.23639 -16.77363 -16.21729 -15.89585 -15.47825 -15.34106 -15.03219 -14.95238 -14.71758 -14.52148 -14.22170 -13.86205 -13.81142 -13.65987 -13.26961 -13.12006 -12.75503 -12.67451 -12.43307 -12.42232 -12.28658 -12.15789 -12.12720 -11.89167 -11.48066 -11.33282 -11.24230 -11.18943 -11.17198 -10.92926 -10.82352 -10.62782 -10.37114 -10.00328 -9.96945 -9.85382 -9.60373 -9.24359 -8.61249 -8.23925 -8.18998 -6.33711 -3.85298 2.46923 2.56227 2.98603 3.04003 3.12166 3.66092 3.70293 3.93584 4.07305 4.38866 4.53525 4.62999 4.65828 4.72875 4.75908 4.83502 4.88384 4.94293 4.97637 5.00119 5.08743 5.13812 5.16300 5.17864 5.19995 5.29592 5.30594 5.40006 5.54105 5.58461 5.66848 5.67140 5.74706 5.81278 5.81747 5.89735 5.90739 5.91060 5.94951 6.00315 6.12714 6.24632 6.34226 6.77255 7.05782 7.27480 7.51330 7.55536 8.06342 8.11761 8.56860 8.92369 9.39453 9.79679 10.79401 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007678 B = 0.002758 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3646.097565 B =10151.304850 C =13252.731273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.364 6.364 5 C 0.043 3.957 6 C 0.519 3.481 7 O -0.514 6.514 8 N -0.729 5.729 9 C 0.147 3.853 10 H 0.100 0.900 11 C -0.125 4.125 12 C -0.117 4.117 13 C -0.121 4.121 14 C -0.107 4.107 15 C 0.083 3.917 16 H 0.047 0.953 17 N -0.664 5.664 18 C 0.048 3.952 19 C 0.448 3.552 20 O -0.563 6.563 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.398 0.602 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.352 0.648 49 H 0.088 0.912 50 H 0.043 0.957 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 -8.336 23.305 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.282 6.282 5 C -0.037 4.037 6 C 0.304 3.696 7 O -0.388 6.388 8 N -0.383 5.383 9 C 0.042 3.958 10 H 0.118 0.882 11 C -0.165 4.165 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.145 4.145 15 C -0.027 4.027 16 H 0.065 0.935 17 N -0.298 5.298 18 C -0.085 4.085 19 C 0.234 3.766 20 O -0.444 6.444 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.232 0.768 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.173 0.827 49 H 0.106 0.894 50 H 0.061 0.939 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.051 -10.029 22.385 24.615 hybrid contribution -0.759 2.621 1.020 2.913 sum -2.810 -7.407 23.405 24.710 Atomic orbital electron populations 1.21698 0.94659 1.02312 1.02039 1.21447 0.95608 0.95390 1.03668 1.22652 0.80407 0.98344 1.00355 1.87996 1.19633 1.25104 1.95456 1.22198 0.91594 0.87134 1.02775 1.20195 0.88587 0.84565 0.76278 1.90734 1.74539 1.26347 1.47209 1.45980 1.07092 1.08709 1.76476 1.21192 0.78078 0.99716 0.96797 0.88187 1.21891 0.96231 1.02338 0.95992 1.21505 0.94414 0.98559 1.01025 1.21586 1.00284 0.97832 0.96164 1.21533 0.93386 1.03348 0.96271 1.21798 0.96328 0.95659 0.88936 0.93546 1.60048 1.32445 1.16744 1.20564 1.21775 1.01686 0.89504 0.95515 1.19707 0.84829 0.83990 0.88072 1.90584 1.51689 1.36632 1.65530 1.42206 1.59379 1.06976 1.14429 1.19430 1.39812 0.96868 0.87274 0.86288 1.25045 0.97561 0.97751 0.95825 1.69619 1.45768 1.25130 1.11549 0.86667 0.79628 0.83424 0.79618 1.19576 1.20196 1.19587 0.92593 0.92390 0.91958 0.90840 0.91076 0.93259 0.92899 0.90408 0.89836 0.76813 0.91218 0.91868 0.91444 0.91768 0.91567 0.92098 0.90640 0.91321 0.82716 0.89370 0.93897 0.79730 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.15 0.37 -0.55 16 2 C -0.12 -1.01 6.30 -26.73 -0.17 -1.18 16 3 C 0.06 0.52 5.94 37.16 0.22 0.74 16 4 O -0.36 -4.47 9.88 -55.14 -0.54 -5.01 16 5 C 0.04 0.43 6.42 36.00 0.23 0.66 16 6 C 0.52 6.52 7.87 -10.99 -0.09 6.43 16 7 O -0.51 -8.74 16.16 -14.35 -0.23 -8.98 16 8 N -0.73 -7.45 4.14 -53.81 -0.22 -7.67 16 9 C 0.15 1.61 2.02 -67.93 -0.14 1.47 16 10 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 11 C -0.13 -1.17 5.49 -26.73 -0.15 -1.31 16 12 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 13 C -0.12 -0.99 5.92 -26.72 -0.16 -1.15 16 14 C -0.11 -1.11 5.42 -26.73 -0.15 -1.26 16 15 C 0.08 0.92 2.05 -67.72 -0.14 0.78 16 16 H 0.05 0.45 7.80 -51.93 -0.40 0.05 16 17 N -0.66 -9.88 5.93 -107.99 -0.64 -10.52 16 18 C 0.05 0.75 5.96 -4.97 -0.03 0.72 16 19 C 0.45 9.95 7.82 -10.99 -0.09 9.86 16 20 O -0.56 -15.01 15.78 5.54 0.09 -14.92 16 21 N -0.59 -13.77 5.09 -10.96 -0.06 -13.83 16 22 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 23 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -25.55 13.96 55.50 0.77 -24.77 16 26 Si 0.88 19.04 27.74 -169.99 -4.71 14.32 16 27 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 28 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 29 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.40 3.11 8.60 -40.82 -0.35 2.76 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 48 H 0.35 5.56 7.27 -39.29 -0.29 5.28 16 49 H 0.09 1.25 7.44 -51.93 -0.39 0.86 16 50 H 0.04 0.57 8.05 -51.93 -0.42 0.15 16 51 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 52 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 418.04 15.07 6.30 6.30 Total: -1.00 -35.57 418.04 -9.11 -44.68 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -9.18 Total: 13.99 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.68 Total: 6.41 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.14 Total: -56.79 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.69 Total: -28.91 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.57 -9.11 -44.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225211273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.096 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds