Wall clock time and date at job start Wed Apr 1 2020 00:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47179 * 2 1 4 4 O 1.42902 * 109.47296 * 179.97438 * 3 2 1 5 5 C 1.42895 * 114.00264 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47301 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99964 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00259 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00341 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.46909 * 35.00148 * 9 8 6 11 11 C 1.52997 * 109.46940 * 274.99874 * 9 8 6 12 12 C 1.52995 * 109.46917 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47185 * 60.00313 * 12 11 9 14 14 C 1.53006 * 109.46607 * 299.99945 * 13 12 11 15 15 C 1.52995 * 109.47303 * 60.00127 * 14 13 12 16 16 H 1.09000 * 109.47126 * 59.99439 * 15 14 13 17 17 N 1.46898 * 109.47180 * 179.97438 * 15 14 13 18 18 C 1.46903 * 110.99849 * 274.99846 * 17 15 14 19 19 C 1.50699 * 109.47398 * 179.97438 * 18 17 15 20 20 O 1.21297 * 119.99867 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00325 * 180.02562 * 19 18 17 22 22 C 1.37092 * 119.99974 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00583 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00110 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00245 * 179.72419 * 24 22 21 26 26 Si 1.86803 * 119.99625 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47085 * 89.99660 * 26 24 22 28 28 H 1.48497 * 109.46789 * 209.99669 * 26 24 22 29 29 H 1.48490 * 109.47245 * 329.99818 * 26 24 22 30 30 H 1.08995 * 109.47115 * 299.99741 * 1 2 3 31 31 H 1.09006 * 109.47456 * 59.99796 * 1 2 3 32 32 H 1.08997 * 109.47491 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47181 * 240.00878 * 2 1 3 34 34 H 1.09000 * 109.47372 * 120.00637 * 2 1 3 35 35 H 1.09002 * 109.47026 * 60.00447 * 3 2 1 36 36 H 1.09000 * 109.47489 * 300.00565 * 3 2 1 37 37 H 1.09004 * 109.47008 * 60.00555 * 5 4 3 38 38 H 1.08997 * 109.47216 * 300.00721 * 5 4 3 39 39 H 0.97000 * 119.99925 * 359.97438 * 8 6 5 40 40 H 1.08997 * 109.46777 * 60.00281 * 11 9 8 41 41 H 1.08993 * 109.47192 * 300.00045 * 11 9 8 42 42 H 1.09005 * 109.47551 * 300.00524 * 12 11 9 43 43 H 1.09002 * 109.47437 * 180.02562 * 12 11 9 44 44 H 1.08999 * 109.47198 * 180.02562 * 13 12 11 45 45 H 1.08993 * 109.47069 * 59.99615 * 13 12 11 46 46 H 1.08999 * 109.47030 * 299.99172 * 14 13 12 47 47 H 1.09001 * 109.46367 * 180.02562 * 14 13 12 48 48 H 1.00898 * 111.00544 * 151.04713 * 17 15 14 49 49 H 1.09005 * 109.47310 * 59.99621 * 18 17 15 50 50 H 1.08999 * 109.47201 * 300.00515 * 18 17 15 51 51 H 0.97005 * 119.99841 * 0.02562 * 21 19 18 52 52 H 0.97000 * 120.00281 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7479 0.0012 6 6 5.5525 2.6289 0.0012 7 8 6.0740 1.5340 0.0002 8 7 6.3164 3.7393 0.0023 9 6 7.7769 3.6236 0.0017 10 1 8.0724 2.7564 -0.5889 11 6 8.2758 3.4564 1.4383 12 6 9.8009 3.3349 1.4376 13 6 10.4129 4.5984 0.8291 14 6 9.9139 4.7656 -0.6076 15 6 8.3887 4.8870 -0.6069 16 1 8.0936 5.7544 -0.0164 17 7 7.9097 5.0482 -1.9862 18 6 7.9587 6.4571 -2.3993 19 6 7.4616 6.5828 -3.8163 20 8 7.1023 5.5957 -4.4228 21 7 7.4172 7.7918 -4.4102 22 6 6.9654 7.9060 -5.6995 23 1 6.6447 7.0272 -6.2393 24 6 6.9191 9.1526 -6.3117 25 7 6.4912 9.2613 -7.5493 26 14 7.4731 10.6727 -5.3779 27 1 8.9244 10.8912 -5.6044 28 1 6.7134 11.8540 -5.8603 29 1 7.2219 10.4813 -3.9270 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.7283 3.2885 0.8913 38 1 3.7289 3.2892 -0.8886 39 1 5.8993 4.6150 0.0027 40 1 7.8402 2.5561 1.8716 41 1 7.9803 4.3235 2.0288 42 1 10.0962 2.4676 0.8471 43 1 10.1564 3.2153 2.4611 44 1 11.4994 4.5117 0.8282 45 1 10.1177 5.4657 1.4195 46 1 10.2092 3.8983 -1.1980 47 1 10.3502 5.6654 -1.0412 48 1 6.9793 4.6725 -2.0922 49 1 8.9859 6.8172 -2.3416 50 1 7.3279 7.0516 -1.7384 51 1 7.7055 8.5811 -3.9256 52 1 6.4592 10.1315 -7.9768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225211273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:15 Heat of formation + Delta-G solvation = -160.478473 kcal Electronic energy + Delta-G solvation = -30176.646760 eV Core-core repulsion = 25981.299721 eV Total energy + Delta-G solvation = -4195.347038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38205 -40.32625 -39.55352 -38.55349 -36.20828 -35.52755 -35.24747 -34.60559 -33.74213 -31.19036 -30.72188 -28.88255 -27.75754 -26.46817 -25.54667 -23.58442 -22.53585 -22.49494 -21.63887 -21.26765 -20.80406 -20.25084 -18.51556 -18.13168 -17.58535 -17.52298 -16.96010 -16.80042 -16.54464 -16.25175 -15.98219 -15.84304 -15.44483 -15.17459 -15.01439 -14.96050 -14.66030 -14.45431 -14.37931 -14.19666 -13.84361 -13.53482 -13.29994 -13.17273 -13.09792 -13.00427 -12.91470 -12.90195 -12.40664 -12.32364 -12.11643 -11.97070 -11.87220 -11.81571 -11.71309 -11.52470 -11.50977 -11.20917 -10.83246 -10.71550 -10.44489 -10.24855 -10.14085 -9.34171 -8.40794 -6.02128 1.30400 1.37126 1.45734 1.51153 1.74870 1.96088 2.23950 2.67444 2.92640 3.15577 3.31784 3.54517 3.70782 3.96986 4.00352 4.03164 4.07595 4.16222 4.18813 4.21153 4.24996 4.29972 4.37593 4.39105 4.43579 4.48244 4.53543 4.54948 4.59290 4.62042 4.82739 4.86513 4.94661 5.00504 5.13488 5.19727 5.20776 5.21383 5.29512 5.32890 5.36825 5.43516 5.52207 5.56987 5.91526 6.05000 6.07008 6.33579 6.46037 6.60170 6.88757 7.16328 7.40184 7.97562 8.76977 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007678 B = 0.002758 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3646.097565 B =10151.304850 C =13252.731273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.054 3.946 4 O -0.400 6.400 5 C 0.043 3.957 6 C 0.512 3.488 7 O -0.570 6.570 8 N -0.715 5.715 9 C 0.149 3.851 10 H 0.060 0.940 11 C -0.116 4.116 12 C -0.117 4.117 13 C -0.111 4.111 14 C -0.108 4.108 15 C 0.091 3.909 16 H 0.079 0.921 17 N -0.688 5.688 18 C 0.063 3.937 19 C 0.447 3.553 20 O -0.617 6.617 21 N -0.589 5.589 22 C -0.329 4.329 23 H 0.052 0.948 24 C -0.017 4.017 25 N -0.936 5.936 26 Si 0.967 3.033 27 H -0.259 1.259 28 H -0.276 1.276 29 H -0.226 1.226 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.413 0.587 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.050 0.950 47 H 0.073 0.927 48 H 0.343 0.657 49 H 0.115 0.885 50 H 0.086 0.914 51 H 0.391 0.609 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.267 -4.992 27.338 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C -0.021 4.021 4 O -0.319 6.319 5 C -0.036 4.036 6 C 0.299 3.701 7 O -0.448 6.448 8 N -0.368 5.368 9 C 0.044 3.956 10 H 0.078 0.922 11 C -0.155 4.155 12 C -0.155 4.155 13 C -0.149 4.149 14 C -0.147 4.147 15 C -0.019 4.019 16 H 0.097 0.903 17 N -0.322 5.322 18 C -0.069 4.069 19 C 0.235 3.765 20 O -0.502 6.502 21 N -0.231 5.231 22 C -0.458 4.458 23 H 0.070 0.930 24 C -0.215 4.215 25 N -0.576 5.576 26 Si 0.786 3.214 27 H -0.183 1.183 28 H -0.201 1.201 29 H -0.149 1.149 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.250 0.750 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.163 0.837 49 H 0.133 0.867 50 H 0.103 0.897 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.496 -6.652 26.457 27.321 hybrid contribution -0.953 1.429 -0.325 1.748 sum -2.449 -5.223 26.132 26.761 Atomic orbital electron populations 1.21669 0.92891 1.02926 1.02694 1.21484 0.97107 0.95159 1.02595 1.22837 0.78883 0.98801 1.01619 1.87959 1.21526 1.26684 1.95770 1.22343 0.89396 0.86797 1.05053 1.20809 0.89979 0.84157 0.75158 1.90707 1.75679 1.28443 1.49987 1.45871 1.06818 1.08984 1.75174 1.21107 0.78540 0.98429 0.97533 0.92177 1.21816 0.96738 1.02441 0.94550 1.21516 0.93745 0.98355 1.01844 1.21534 1.00747 0.98120 0.94528 1.21562 0.92946 1.02482 0.97710 1.21855 0.96518 0.96398 0.87092 0.90342 1.60030 1.32190 1.16519 1.23446 1.21714 1.03516 0.90749 0.90934 1.21048 0.82486 0.82626 0.90360 1.90567 1.53447 1.38491 1.67648 1.42009 1.59774 1.08406 1.12904 1.18984 1.41826 0.95437 0.89552 0.92974 1.26163 0.96740 1.01860 0.96776 1.69811 1.47106 1.26651 1.14068 0.85342 0.79262 0.76666 0.80090 1.18326 1.20126 1.14937 0.91435 0.92165 0.91427 0.92505 0.91628 0.91086 0.92349 0.86694 0.88570 0.74981 0.93079 0.89490 0.93153 0.90003 0.90645 0.90087 0.93083 0.90847 0.83712 0.86738 0.89651 0.77368 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.13 -2.07 6.30 30.59 0.19 -1.88 16 3 C 0.05 0.92 5.94 71.98 0.43 1.35 16 4 O -0.40 -9.89 9.88 -129.94 -1.28 -11.18 16 5 C 0.04 0.82 6.42 71.23 0.46 1.27 16 6 C 0.51 12.97 7.87 87.66 0.69 13.66 16 7 O -0.57 -20.48 16.16 16.02 0.26 -20.22 16 8 N -0.71 -13.77 4.14 -442.53 -1.83 -15.61 16 9 C 0.15 3.15 2.02 44.99 0.09 3.24 16 10 H 0.06 1.78 7.58 -2.39 -0.02 1.76 16 11 C -0.12 -1.96 5.49 30.59 0.17 -1.79 16 12 C -0.12 -1.73 5.92 30.59 0.18 -1.55 16 13 C -0.11 -1.45 5.92 30.60 0.18 -1.27 16 14 C -0.11 -2.00 5.42 30.59 0.17 -1.84 16 15 C 0.09 1.76 2.05 44.91 0.09 1.85 16 16 H 0.08 1.09 7.80 -2.39 -0.02 1.07 16 17 N -0.69 -19.36 5.93 -495.57 -2.94 -22.30 16 18 C 0.06 1.75 5.96 85.56 0.51 2.26 16 19 C 0.45 19.55 7.82 87.66 0.69 20.24 16 20 O -0.62 -34.17 15.78 -3.08 -0.05 -34.22 16 21 N -0.59 -26.90 5.09 -306.98 -1.56 -28.46 16 22 C -0.33 -19.04 10.16 84.04 0.85 -18.19 16 23 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 24 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 25 N -0.94 -56.11 13.96 21.66 0.30 -55.80 16 26 Si 0.97 37.62 27.74 68.60 1.90 39.52 16 27 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 28 H -0.28 -10.71 7.11 99.48 0.71 -10.01 16 29 H -0.23 -7.15 6.52 99.48 0.65 -6.50 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 39 H 0.41 5.34 8.60 -92.71 -0.80 4.55 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.07 1.30 7.45 -2.39 -0.02 1.28 16 48 H 0.34 10.64 7.27 -89.70 -0.65 9.99 16 49 H 0.11 2.68 7.44 -2.38 -0.02 2.66 16 50 H 0.09 1.74 8.05 -2.39 -0.02 1.72 16 51 H 0.39 14.44 5.76 -92.70 -0.53 13.91 16 52 H 0.28 15.26 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -86.89 418.04 -0.44 -87.33 By element: Atomic # 1 Polarization: 46.08 SS G_CDS: -1.12 Total: 44.96 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 5.88 Total: 15.98 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -6.03 Total: -122.18 kcal Atomic # 8 Polarization: -64.54 SS G_CDS: -1.07 Total: -65.61 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 1.90 Total: 39.52 kcal Total: -86.89 -0.44 -87.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225211273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.150 kcal (2) G-P(sol) polarization free energy of solvation -86.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds