Wall clock time and date at job start Wed Apr 1 2020 00:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47054 * 2 1 4 4 O 1.42901 * 109.46664 * 119.99747 * 2 1 3 5 5 C 1.42898 * 113.99713 * 90.00502 * 4 2 1 6 6 C 1.53006 * 109.46905 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47119 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00098 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99810 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99826 * 179.97438 * 9 7 6 11 11 C 1.53119 * 109.51978 * 204.99618 * 10 9 7 12 12 C 1.53039 * 109.27478 * 182.37658 * 11 10 9 13 13 N 1.46852 * 109.52336 * 59.18093 * 12 11 10 14 14 C 1.46900 * 111.00118 * 174.15791 * 13 12 11 15 15 C 1.50697 * 109.47237 * 293.61170 * 14 13 12 16 16 O 1.21294 * 119.99957 * 353.73088 * 15 14 13 17 17 N 1.34777 * 120.00218 * 173.72893 * 15 14 13 18 18 C 1.37099 * 120.00043 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99929 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99738 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00132 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47241 * 90.00085 * 22 20 18 24 24 H 1.48497 * 109.47231 * 210.00154 * 22 20 18 25 25 H 1.48508 * 109.47072 * 330.00134 * 22 20 18 26 26 C 1.46845 * 111.19897 * 298.25829 * 13 12 11 27 27 C 1.53038 * 109.52423 * 61.74130 * 26 13 12 28 28 H 1.08995 * 109.47095 * 300.00239 * 1 2 3 29 29 H 1.09005 * 109.46878 * 60.00150 * 1 2 3 30 30 H 1.08996 * 109.46727 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47095 * 239.99761 * 2 1 3 32 32 H 1.08998 * 109.46986 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47155 * 299.99680 * 3 2 1 34 34 H 1.08999 * 109.47162 * 59.99194 * 3 2 1 35 35 H 1.09001 * 109.47411 * 59.99997 * 5 4 2 36 36 H 1.09000 * 109.46946 * 299.99299 * 5 4 2 37 37 H 1.09000 * 109.47269 * 59.99374 * 6 5 4 38 38 H 1.09009 * 109.46915 * 299.99611 * 6 5 4 39 39 H 0.97000 * 120.00090 * 359.97438 * 9 7 6 40 40 H 1.08994 * 109.52080 * 325.12579 * 10 9 7 41 41 H 1.08998 * 109.50519 * 62.44346 * 11 10 9 42 42 H 1.08998 * 109.50523 * 302.31571 * 11 10 9 43 43 H 1.08994 * 109.46299 * 299.16822 * 12 11 10 44 44 H 1.09003 * 109.45395 * 179.18930 * 12 11 10 45 45 H 1.08996 * 109.46919 * 173.61386 * 14 13 12 46 46 H 1.08994 * 109.47139 * 53.61230 * 14 13 12 47 47 H 0.97002 * 119.99804 * 0.02562 * 17 15 14 48 48 H 0.96995 * 120.00108 * 179.97438 * 21 20 18 49 49 H 1.08998 * 109.46555 * 181.75400 * 26 13 12 50 50 H 1.09004 * 109.46392 * 301.72721 * 26 13 12 51 51 H 1.08998 * 109.50374 * 180.88473 * 27 26 13 52 52 H 1.09001 * 109.50604 * 60.76106 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 -2.0781 0.9887 6 6 2.7090 -2.6924 2.2943 7 6 2.9139 -4.1735 2.1063 8 8 2.6760 -4.6873 1.0338 9 7 3.3608 -4.9273 3.1303 10 6 3.5595 -6.3672 2.9477 11 6 3.4522 -7.0743 4.3016 12 6 3.7193 -8.5694 4.1133 13 7 5.0602 -8.7608 3.5458 14 6 5.4053 -10.1871 3.4800 15 6 5.5332 -10.7380 4.8768 16 8 5.4672 -9.9924 5.8312 17 7 5.7208 -12.0593 5.0656 18 6 5.8376 -12.5604 6.3363 19 1 5.7789 -11.8965 7.1861 20 6 6.0316 -13.9225 6.5309 21 7 6.1035 -14.7303 5.4968 22 14 6.1901 -14.6054 8.2623 23 1 4.8459 -14.9763 8.7731 24 1 7.0612 -15.8079 8.2423 25 1 6.7891 -13.5748 9.1480 26 6 5.1723 -8.1306 2.2242 27 6 4.9486 -6.6224 2.3561 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 2.9320 -2.2467 0.1988 36 1 1.2538 -2.5433 0.7125 37 1 1.9774 -2.5238 3.0846 38 1 3.6554 -2.2271 2.5701 39 1 3.5507 -4.5164 3.9882 40 1 2.7985 -6.7571 2.2718 41 1 2.4510 -6.9320 4.7082 42 1 4.1877 -6.6571 4.9894 43 1 2.9752 -8.9888 3.4362 44 1 3.6578 -9.0735 5.0778 45 1 6.3522 -10.3078 2.9537 46 1 4.6222 -10.7262 2.9471 47 1 5.7739 -12.6555 4.3023 48 1 6.2393 -15.6810 5.6326 49 1 6.1661 -8.3160 1.8166 50 1 4.4213 -8.5520 1.5560 51 1 5.0164 -6.1571 1.3728 52 1 5.7076 -6.1980 3.0133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226188149.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:38 Heat of formation + Delta-G solvation = -155.406216 kcal Electronic energy + Delta-G solvation = -29335.627710 eV Core-core repulsion = 25140.500622 eV Total energy + Delta-G solvation = -4195.127089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24449 -40.42844 -39.39946 -38.92002 -36.23879 -35.71677 -34.32579 -33.32006 -32.88553 -31.83991 -31.47403 -28.65764 -28.11230 -26.47389 -25.06302 -24.22565 -23.39353 -22.27831 -21.40883 -21.03851 -20.74651 -19.85331 -18.42048 -17.78377 -17.51265 -17.30421 -16.96838 -16.64401 -16.44303 -16.25956 -15.87642 -15.78527 -15.52596 -15.33141 -15.08348 -14.81998 -14.50952 -14.42175 -14.13873 -13.88711 -13.67888 -13.48215 -13.36149 -13.20539 -13.09090 -12.94293 -12.74519 -12.71611 -12.47346 -12.39245 -12.33399 -12.18518 -12.11468 -12.11076 -11.82728 -11.61708 -11.61005 -11.38698 -10.93621 -10.56159 -10.25991 -10.07599 -9.97486 -9.20674 -8.44644 -5.93077 1.38953 1.42683 1.55320 1.59626 1.96413 2.08105 2.29543 2.74825 2.84810 3.22496 3.39750 3.66446 3.77656 3.86059 3.94841 4.02157 4.06670 4.15369 4.18754 4.20739 4.30009 4.30204 4.36671 4.46403 4.48444 4.52531 4.56377 4.63505 4.72254 4.72677 4.77298 4.82513 4.90876 4.91994 4.93445 4.97601 4.98608 5.05238 5.12588 5.28195 5.29872 5.33279 5.42846 5.49234 5.89677 6.09532 6.22162 6.24639 6.54269 6.63028 7.15252 7.22103 7.59266 8.14872 8.72861 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.042895 B = 0.001475 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.604914 B =18981.284812 C =19235.922423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 C -0.147 4.147 4 O -0.397 6.397 5 C 0.080 3.920 6 C -0.131 4.131 7 C 0.518 3.482 8 O -0.584 6.584 9 N -0.711 5.711 10 C 0.151 3.849 11 C -0.107 4.107 12 C 0.058 3.942 13 N -0.530 5.530 14 C 0.056 3.944 15 C 0.443 3.557 16 O -0.611 6.611 17 N -0.576 5.576 18 C -0.331 4.331 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.059 3.941 27 C -0.115 4.115 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.417 0.583 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.032 0.968 44 H 0.064 0.936 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.088 0.912 50 H 0.038 0.962 51 H 0.070 0.930 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.285 26.899 -11.743 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 C -0.204 4.204 4 O -0.317 6.317 5 C 0.003 3.997 6 C -0.170 4.170 7 C 0.306 3.694 8 O -0.464 6.464 9 N -0.363 5.363 10 C 0.046 3.954 11 C -0.145 4.145 12 C -0.070 4.070 13 N -0.255 5.255 14 C -0.075 4.075 15 C 0.230 3.770 16 O -0.497 6.497 17 N -0.213 5.213 18 C -0.461 4.461 19 H 0.098 0.902 20 C -0.212 4.212 21 N -0.563 5.563 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.069 4.069 27 C -0.154 4.154 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.254 0.746 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.082 0.918 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.107 0.893 50 H 0.056 0.944 51 H 0.089 0.911 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.102 27.162 -11.390 30.547 hybrid contribution -0.362 -1.563 0.033 1.605 sum -8.464 25.599 -11.357 29.256 Atomic orbital electron populations 1.22293 0.95393 1.02170 1.03273 1.22291 0.94253 0.94354 0.87608 1.21871 1.01678 0.93576 1.03289 1.87827 1.86924 1.19975 1.36974 1.22069 0.99764 0.81092 0.96782 1.21441 1.06046 0.89723 0.99824 1.20842 0.75438 0.89681 0.83436 1.90705 1.52841 1.75345 1.27544 1.45959 1.66827 1.08178 1.15288 1.20883 0.97123 0.80305 0.97059 1.21701 1.02842 0.93681 0.96280 1.22036 0.88054 0.97097 0.99806 1.61510 1.28116 1.11864 1.24017 1.21729 1.03057 0.89195 0.93484 1.20724 0.82222 0.82184 0.91870 1.90470 1.56361 1.58437 1.44433 1.41951 1.64208 1.06713 1.08453 1.19668 1.48533 0.92358 0.85537 0.90197 1.26016 0.96413 0.95680 1.03139 1.69675 1.49855 1.05159 1.31621 0.84941 0.78470 0.77699 0.77313 1.19706 1.19682 1.19715 1.22123 1.02093 0.94370 0.88327 1.21856 0.96996 0.95070 1.01432 0.91913 0.90103 0.93204 0.92017 0.92207 0.89565 0.91943 0.93335 0.93523 0.86179 0.86079 0.74631 0.91121 0.89737 0.90513 0.94995 0.91754 0.87145 0.91848 0.77141 0.91395 0.89336 0.94423 0.91098 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.53 71.98 0.69 -1.25 16 2 C 0.07 0.93 3.34 30.60 0.10 1.03 16 3 C -0.15 -1.42 9.56 71.98 0.69 -0.73 16 4 O -0.40 -6.55 9.99 -148.98 -1.49 -8.03 16 5 C 0.08 1.32 5.04 71.98 0.36 1.68 16 6 C -0.13 -1.69 6.07 29.85 0.18 -1.51 16 7 C 0.52 9.85 7.80 87.66 0.68 10.54 16 8 O -0.58 -16.00 15.64 -3.02 -0.05 -16.05 16 9 N -0.71 -11.79 5.08 -442.15 -2.25 -14.04 16 10 C 0.15 3.26 2.52 45.07 0.11 3.37 16 11 C -0.11 -2.51 5.57 30.65 0.17 -2.34 16 12 C 0.06 1.82 5.12 86.33 0.44 2.26 16 13 N -0.53 -16.85 4.35 -900.94 -3.92 -20.76 16 14 C 0.06 1.96 5.45 85.56 0.47 2.43 16 15 C 0.44 20.90 7.31 87.66 0.64 21.54 16 16 O -0.61 -33.11 14.29 -3.07 -0.04 -33.15 16 17 N -0.58 -29.47 5.29 -306.98 -1.62 -31.09 16 18 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 21 N -0.92 -49.84 13.05 21.66 0.28 -49.55 16 22 Si 0.99 42.85 29.55 68.60 2.03 44.87 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 C 0.06 1.45 5.46 86.33 0.47 1.92 16 27 C -0.11 -2.55 5.68 30.65 0.17 -2.38 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.63 7.87 -2.39 -0.02 0.61 16 31 H 0.06 0.77 7.79 -2.39 -0.02 0.75 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.05 0.87 8.04 -2.39 -0.02 0.85 16 36 H 0.05 0.85 7.83 -2.39 -0.02 0.83 16 37 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.42 4.60 8.61 -92.71 -0.80 3.80 16 40 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 2.51 6.06 -2.39 -0.01 2.50 16 45 H 0.11 3.39 7.98 -2.39 -0.02 3.37 16 46 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 47 H 0.39 19.32 7.90 -92.71 -0.73 18.58 16 48 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.09 1.99 8.01 -2.39 -0.02 1.97 16 50 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 51 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -71.52 419.25 -1.21 -72.73 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.62 Total: 36.68 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 6.46 Total: 18.40 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -7.50 Total: -115.45 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -1.58 Total: -57.24 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -71.52 -1.21 -72.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226188149.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.679 kcal (2) G-P(sol) polarization free energy of solvation -71.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds