Wall clock time and date at job start Wed Apr 1 2020 00:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47584 * 2 1 4 4 O 1.42898 * 109.47026 * 239.99513 * 2 1 3 5 5 C 1.42899 * 114.00425 * 243.73797 * 4 2 1 6 6 C 1.53006 * 109.47348 * 304.80886 * 5 4 2 7 7 N 1.46499 * 109.46709 * 297.78000 * 6 5 4 8 8 C 1.34773 * 120.00044 * 185.16062 * 7 6 5 9 9 O 1.21580 * 120.00264 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00253 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00124 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47222 * 179.97438 * 11 10 8 13 13 O 1.21292 * 119.99874 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00217 * 180.02562 * 12 11 10 15 15 C 1.37094 * 119.99762 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00438 * 359.97438 * 15 14 12 17 17 C 1.38951 * 119.99694 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00297 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00203 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47200 * 89.99826 * 19 17 15 21 21 H 1.48497 * 109.47401 * 209.99719 * 19 17 15 22 22 H 1.48508 * 109.46876 * 329.99985 * 19 17 15 23 23 C 1.52998 * 109.47471 * 184.80319 * 5 4 2 24 24 C 1.53000 * 109.47217 * 300.00106 * 23 5 4 25 25 C 1.53000 * 109.47139 * 299.99930 * 24 23 5 26 26 C 1.52998 * 109.47008 * 59.99942 * 25 24 23 27 27 C 1.53000 * 109.46910 * 64.80375 * 5 4 2 28 28 H 1.09005 * 109.47075 * 66.21900 * 1 2 3 29 29 H 1.08997 * 109.47655 * 186.22169 * 1 2 3 30 30 H 1.09003 * 109.46918 * 306.22401 * 1 2 3 31 31 H 1.09005 * 109.46788 * 120.00051 * 2 1 3 32 32 H 1.09000 * 109.46650 * 299.99913 * 3 2 1 33 33 H 1.08999 * 109.47282 * 59.99675 * 3 2 1 34 34 H 1.08996 * 109.47304 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47163 * 57.77372 * 6 5 4 36 36 H 1.08995 * 109.47099 * 177.78185 * 6 5 4 37 37 H 0.97010 * 120.00257 * 5.15607 * 7 6 5 38 38 H 0.97006 * 119.99605 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.47243 * 299.99965 * 11 10 8 40 40 H 1.08999 * 109.47417 * 60.00267 * 11 10 8 41 41 H 0.96995 * 119.99640 * 359.97438 * 14 12 11 42 42 H 0.97002 * 120.00243 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.47235 * 60.00315 * 23 5 4 44 44 H 1.09002 * 109.46945 * 180.02562 * 23 5 4 45 45 H 1.09000 * 109.47171 * 179.97438 * 24 23 5 46 46 H 1.08997 * 109.46667 * 60.00013 * 24 23 5 47 47 H 1.09002 * 109.47316 * 300.00110 * 25 24 23 48 48 H 1.08993 * 109.47020 * 179.97438 * 25 24 23 49 49 H 1.09000 * 109.47235 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.47675 * 59.99806 * 26 25 24 51 51 H 1.09002 * 109.47316 * 180.02562 * 27 5 4 52 52 H 1.09000 * 109.47138 * 300.00205 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 -1.1667 5 6 2.7446 -1.8653 -0.8892 6 6 3.8986 -1.5405 0.0616 7 7 4.8107 -0.5929 -0.5835 8 6 5.9595 -0.2411 0.0272 9 8 6.2391 -0.7106 1.1133 10 7 6.7990 0.6303 -0.5665 11 6 8.0479 1.0122 0.0970 12 6 8.7990 1.9896 -0.7700 13 8 8.3366 2.3330 -1.8374 14 7 9.9849 2.4813 -0.3597 15 6 10.6678 3.3709 -1.1483 16 1 10.2557 3.6773 -2.0984 17 6 11.8901 3.8783 -0.7251 18 7 12.3913 3.5059 0.4312 19 14 12.8211 5.0898 -1.7998 20 1 12.4088 6.4745 -1.4564 21 1 14.2800 4.9363 -1.5695 22 1 12.5145 4.8218 -3.2279 23 6 3.3040 -2.4344 -2.1946 24 6 2.1500 -2.7593 -3.1452 25 6 1.2272 -3.7908 -2.4933 26 6 0.6677 -3.2217 -1.1879 27 6 1.8217 -2.8969 -0.2372 28 1 -0.3633 0.4144 -0.9404 29 1 -0.3634 -1.0215 0.1114 30 1 -0.3633 0.6073 0.8291 31 1 1.8932 -0.5139 0.8900 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 3.5026 -1.0986 0.9759 36 1 4.4379 -2.4560 0.3044 37 1 4.5879 -0.2186 -1.4504 38 1 6.5764 1.0040 -1.4336 39 1 7.8221 1.4765 1.0570 40 1 8.6601 0.1248 0.2577 41 1 10.3547 2.2064 0.4937 42 1 13.2445 3.8604 0.7268 43 1 3.9615 -1.6995 -2.6590 44 1 3.8668 -3.3436 -1.9828 45 1 2.5486 -3.1643 -4.0754 46 1 1.5869 -1.8504 -3.3569 47 1 1.7903 -4.6998 -2.2815 48 1 0.4049 -4.0219 -3.1703 49 1 0.0099 -3.9564 -0.7236 50 1 0.1046 -2.3128 -1.3995 51 1 2.3849 -3.8057 -0.0251 52 1 1.4231 -2.4914 0.6928 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227977902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:19 Heat of formation + Delta-G solvation = -137.062810 kcal Electronic energy + Delta-G solvation = -31005.867656 eV Core-core repulsion = 26811.535997 eV Total energy + Delta-G solvation = -4194.331659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.78113 -39.48923 -38.13773 -36.74619 -34.78328 -34.33854 -33.61295 -32.74380 -31.36774 -31.17915 -30.42821 -27.78292 -27.35252 -25.76027 -24.29781 -23.27877 -21.94343 -21.09489 -20.55008 -19.81991 -19.55648 -18.41672 -17.96717 -16.95232 -16.39207 -15.75045 -15.67770 -15.43628 -15.21149 -14.90398 -14.59006 -14.36290 -14.29212 -14.13940 -13.83751 -13.79610 -13.63899 -13.45271 -13.06476 -12.75214 -12.73367 -12.43362 -12.38089 -12.23604 -12.15519 -11.96983 -11.83142 -11.61812 -11.60863 -11.29403 -11.11447 -10.99126 -10.81519 -10.63080 -10.45045 -10.30875 -10.17924 -10.03680 -9.69907 -9.62124 -9.11533 -8.60531 -8.55877 -8.08386 -6.49967 -3.91900 2.80949 3.12668 3.22927 3.28371 3.38805 3.44441 3.77140 4.10266 4.25868 4.29723 4.40393 4.52716 4.66901 4.74968 4.82174 4.88060 4.92457 4.97664 4.98773 5.12080 5.18739 5.20626 5.26004 5.31094 5.38699 5.42341 5.49806 5.53945 5.60147 5.66137 5.69690 5.75271 5.82587 5.88610 5.90957 5.93217 5.95805 6.02726 6.05098 6.09922 6.10353 6.18937 6.51071 6.78540 7.06959 7.14034 7.47375 7.94049 8.27407 8.47013 8.82909 9.06250 9.41294 9.89311 10.66958 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.002036 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.842593 B =13751.682888 C =13968.029064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.077 3.923 3 C -0.161 4.161 4 O -0.360 6.360 5 C 0.110 3.890 6 C 0.115 3.885 7 N -0.741 5.741 8 C 0.704 3.296 9 O -0.600 6.600 10 N -0.724 5.724 11 C 0.129 3.871 12 C 0.429 3.571 13 O -0.597 6.597 14 N -0.550 5.550 15 C -0.304 4.304 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.103 4.103 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.139 4.139 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.400 0.600 38 H 0.407 0.593 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.064 -13.023 -1.194 27.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 C -0.219 4.219 4 O -0.279 6.279 5 C 0.070 3.930 6 C -0.010 4.010 7 N -0.398 5.398 8 C 0.404 3.596 9 O -0.480 6.480 10 N -0.382 5.382 11 C 0.001 3.999 12 C 0.215 3.785 13 O -0.484 6.484 14 N -0.185 5.185 15 C -0.434 4.434 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.141 4.141 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.152 4.152 27 C -0.177 4.177 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.235 0.765 38 H 0.244 0.756 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.917 -13.082 -0.988 27.279 hybrid contribution 0.667 0.742 -0.332 1.051 sum -23.250 -12.340 -1.320 26.355 Atomic orbital electron populations 1.22194 0.95295 1.02142 1.02475 1.22091 0.93733 0.93286 0.88944 1.22074 1.02265 0.95321 1.02218 1.88014 1.71529 1.37581 1.30799 1.21760 0.89924 0.85793 0.95556 1.21805 0.90135 0.93514 0.95527 1.44925 1.20946 1.49675 1.24275 1.15852 0.80041 0.79819 0.83901 1.90898 1.76550 1.59364 1.21145 1.44763 1.21337 1.47480 1.24579 1.20769 0.84864 0.98607 0.95697 1.19775 0.83950 0.86417 0.88388 1.90492 1.69148 1.64221 1.24525 1.41788 1.16938 1.39130 1.20622 1.19722 1.01109 1.19580 1.02946 0.87704 1.25325 0.97140 0.98614 0.96697 1.69616 1.20132 1.44032 1.19740 0.85816 0.78216 0.80001 0.80003 1.20283 1.20815 1.19331 1.21524 0.97893 1.00859 0.93805 1.21461 0.96538 0.99628 0.97712 1.21533 0.99046 0.98342 0.96724 1.21481 0.97145 1.01250 0.95374 1.22075 0.97546 0.99249 0.98850 0.91864 0.92290 0.91832 0.91560 0.91932 0.91809 0.91797 0.91526 0.90593 0.76497 0.75611 0.90096 0.90080 0.77029 0.91614 0.90959 0.90469 0.92070 0.90953 0.92235 0.92150 0.92225 0.90928 0.90717 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.17 37.15 0.34 -0.80 16 2 C 0.08 0.65 2.20 -26.73 -0.06 0.59 16 3 C -0.16 -1.50 9.56 37.16 0.36 -1.15 16 4 O -0.36 -3.24 8.06 -35.23 -0.28 -3.53 16 5 C 0.11 0.91 0.33 -90.62 -0.03 0.88 16 6 C 0.12 1.21 4.30 -4.04 -0.02 1.19 16 7 N -0.74 -9.04 4.90 -65.23 -0.32 -9.36 16 8 C 0.70 11.49 8.57 -86.92 -0.74 10.75 16 9 O -0.60 -11.77 16.34 5.30 0.09 -11.68 16 10 N -0.72 -12.34 5.53 -66.42 -0.37 -12.70 16 11 C 0.13 2.44 6.15 -5.20 -0.03 2.40 16 12 C 0.43 9.92 7.85 -10.98 -0.09 9.83 16 13 O -0.60 -15.36 15.24 5.55 0.08 -15.27 16 14 N -0.55 -13.73 5.29 -10.96 -0.06 -13.79 16 15 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 16 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 17 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.89 -24.01 13.05 55.50 0.72 -23.29 16 19 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 C -0.10 -0.83 4.75 -26.73 -0.13 -0.96 16 24 C -0.12 -0.85 5.78 -26.73 -0.15 -1.00 16 25 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 26 C -0.12 -0.74 5.57 -26.73 -0.15 -0.89 16 27 C -0.14 -0.97 4.55 -26.73 -0.12 -1.09 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.38 6.76 -51.93 -0.35 0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.57 4.89 -51.93 -0.25 0.31 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.71 7.94 -51.93 -0.41 0.30 16 35 H 0.07 0.74 6.12 -51.93 -0.32 0.42 16 36 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 37 H 0.40 4.39 7.25 -40.82 -0.30 4.09 16 38 H 0.41 6.80 7.45 -40.82 -0.30 6.49 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.07 0.63 6.84 -51.93 -0.35 0.28 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.07 0.52 6.14 -51.93 -0.32 0.20 16 51 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.07 0.45 6.84 -51.93 -0.36 0.10 16 LS Contribution 406.28 15.07 6.12 6.12 Total: -1.00 -31.22 406.28 -8.95 -40.17 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -8.69 Total: 16.78 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -1.22 Total: 10.93 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.02 Total: -59.14 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.11 Total: -30.48 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.22 -8.95 -40.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227977902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.889 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds