Wall clock time and date at job start Wed Apr 1 2020 00:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47584 * 2 1 4 4 O 1.42898 * 109.47026 * 239.99513 * 2 1 3 5 5 C 1.42899 * 114.00425 * 243.73797 * 4 2 1 6 6 C 1.53006 * 109.47348 * 304.80886 * 5 4 2 7 7 N 1.46499 * 109.46709 * 297.78000 * 6 5 4 8 8 C 1.34773 * 120.00044 * 185.16062 * 7 6 5 9 9 O 1.21580 * 120.00264 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00253 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00124 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47222 * 179.97438 * 11 10 8 13 13 O 1.21292 * 119.99874 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00217 * 180.02562 * 12 11 10 15 15 C 1.37094 * 119.99762 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00438 * 359.97438 * 15 14 12 17 17 C 1.38951 * 119.99694 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00297 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00203 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47200 * 89.99826 * 19 17 15 21 21 H 1.48497 * 109.47401 * 209.99719 * 19 17 15 22 22 H 1.48508 * 109.46876 * 329.99985 * 19 17 15 23 23 C 1.52998 * 109.47471 * 184.80319 * 5 4 2 24 24 C 1.53000 * 109.47217 * 300.00106 * 23 5 4 25 25 C 1.53000 * 109.47139 * 299.99930 * 24 23 5 26 26 C 1.52998 * 109.47008 * 59.99942 * 25 24 23 27 27 C 1.53000 * 109.46910 * 64.80375 * 5 4 2 28 28 H 1.09005 * 109.47075 * 66.21900 * 1 2 3 29 29 H 1.08997 * 109.47655 * 186.22169 * 1 2 3 30 30 H 1.09003 * 109.46918 * 306.22401 * 1 2 3 31 31 H 1.09005 * 109.46788 * 120.00051 * 2 1 3 32 32 H 1.09000 * 109.46650 * 299.99913 * 3 2 1 33 33 H 1.08999 * 109.47282 * 59.99675 * 3 2 1 34 34 H 1.08996 * 109.47304 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47163 * 57.77372 * 6 5 4 36 36 H 1.08995 * 109.47099 * 177.78185 * 6 5 4 37 37 H 0.97010 * 120.00257 * 5.15607 * 7 6 5 38 38 H 0.97006 * 119.99605 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.47243 * 299.99965 * 11 10 8 40 40 H 1.08999 * 109.47417 * 60.00267 * 11 10 8 41 41 H 0.96995 * 119.99640 * 359.97438 * 14 12 11 42 42 H 0.97002 * 120.00243 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.47235 * 60.00315 * 23 5 4 44 44 H 1.09002 * 109.46945 * 180.02562 * 23 5 4 45 45 H 1.09000 * 109.47171 * 179.97438 * 24 23 5 46 46 H 1.08997 * 109.46667 * 60.00013 * 24 23 5 47 47 H 1.09002 * 109.47316 * 300.00110 * 25 24 23 48 48 H 1.08993 * 109.47020 * 179.97438 * 25 24 23 49 49 H 1.09000 * 109.47235 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.47675 * 59.99806 * 26 25 24 51 51 H 1.09002 * 109.47316 * 180.02562 * 27 5 4 52 52 H 1.09000 * 109.47138 * 300.00205 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 -1.1667 5 6 2.7446 -1.8653 -0.8892 6 6 3.8986 -1.5405 0.0616 7 7 4.8107 -0.5929 -0.5835 8 6 5.9595 -0.2411 0.0272 9 8 6.2391 -0.7106 1.1133 10 7 6.7990 0.6303 -0.5665 11 6 8.0479 1.0122 0.0970 12 6 8.7990 1.9896 -0.7700 13 8 8.3366 2.3330 -1.8374 14 7 9.9849 2.4813 -0.3597 15 6 10.6678 3.3709 -1.1483 16 1 10.2557 3.6773 -2.0984 17 6 11.8901 3.8783 -0.7251 18 7 12.3913 3.5059 0.4312 19 14 12.8211 5.0898 -1.7998 20 1 12.4088 6.4745 -1.4564 21 1 14.2800 4.9363 -1.5695 22 1 12.5145 4.8218 -3.2279 23 6 3.3040 -2.4344 -2.1946 24 6 2.1500 -2.7593 -3.1452 25 6 1.2272 -3.7908 -2.4933 26 6 0.6677 -3.2217 -1.1879 27 6 1.8217 -2.8969 -0.2372 28 1 -0.3633 0.4144 -0.9404 29 1 -0.3634 -1.0215 0.1114 30 1 -0.3633 0.6073 0.8291 31 1 1.8932 -0.5139 0.8900 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 3.5026 -1.0986 0.9759 36 1 4.4379 -2.4560 0.3044 37 1 4.5879 -0.2186 -1.4504 38 1 6.5764 1.0040 -1.4336 39 1 7.8221 1.4765 1.0570 40 1 8.6601 0.1248 0.2577 41 1 10.3547 2.2064 0.4937 42 1 13.2445 3.8604 0.7268 43 1 3.9615 -1.6995 -2.6590 44 1 3.8668 -3.3436 -1.9828 45 1 2.5486 -3.1643 -4.0754 46 1 1.5869 -1.8504 -3.3569 47 1 1.7903 -4.6998 -2.2815 48 1 0.4049 -4.0219 -3.1703 49 1 0.0099 -3.9564 -0.7236 50 1 0.1046 -2.3128 -1.3995 51 1 2.3849 -3.8057 -0.0251 52 1 1.4231 -2.4914 0.6928 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227977902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:18 Heat of formation + Delta-G solvation = -158.296210 kcal Electronic energy + Delta-G solvation = -31006.788405 eV Core-core repulsion = 26811.535997 eV Total energy + Delta-G solvation = -4195.252408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65453 -40.77510 -39.89949 -37.36869 -36.27449 -35.73533 -35.25647 -33.48989 -33.34859 -31.78069 -31.24447 -29.21620 -28.06137 -26.95180 -25.93754 -23.91428 -22.63299 -21.96364 -21.61774 -21.34556 -20.49198 -20.10921 -19.56813 -17.74358 -17.47038 -17.41258 -16.89246 -16.52409 -16.42315 -16.13331 -15.89228 -15.78230 -15.42473 -15.11545 -15.01121 -14.92011 -14.57742 -14.31716 -13.94559 -13.86449 -13.66130 -13.54158 -13.42229 -13.33307 -13.05262 -12.98726 -12.90137 -12.87535 -12.54311 -12.45524 -12.31056 -12.12710 -11.88939 -11.61038 -11.56867 -11.45541 -11.39447 -11.20931 -10.82561 -10.55662 -10.41355 -10.38081 -10.09973 -9.79930 -8.50752 -6.00921 1.36523 1.42406 1.53668 1.60840 1.90018 2.11947 2.28676 2.68957 3.05745 3.16405 3.33202 3.53467 3.68351 3.82333 3.99043 4.16455 4.17729 4.21559 4.24640 4.31664 4.37940 4.42735 4.46122 4.52131 4.56190 4.62131 4.65671 4.76030 4.76456 4.80828 4.94138 4.97623 4.98516 5.11809 5.13742 5.27130 5.30459 5.31154 5.31774 5.34928 5.38871 5.40083 5.46230 5.47515 5.63058 5.90402 5.94186 6.38861 6.48449 7.00749 7.03761 7.42824 7.52948 7.94867 8.66161 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.002036 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.842593 B =13751.682888 C =13968.029064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.076 3.924 3 C -0.160 4.160 4 O -0.367 6.367 5 C 0.117 3.883 6 C 0.114 3.886 7 N -0.723 5.723 8 C 0.705 3.295 9 O -0.632 6.632 10 N -0.725 5.725 11 C 0.143 3.857 12 C 0.434 3.566 13 O -0.624 6.624 14 N -0.560 5.560 15 C -0.336 4.336 16 H 0.086 0.914 17 C -0.011 4.011 18 N -0.916 5.916 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.270 1.270 23 C -0.105 4.105 24 C -0.112 4.112 25 C -0.118 4.118 26 C -0.112 4.112 27 C -0.137 4.137 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.407 0.593 38 H 0.409 0.591 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.081 0.919 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.071 -13.666 -1.313 28.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.018 3.982 3 C -0.218 4.218 4 O -0.287 6.287 5 C 0.077 3.923 6 C -0.011 4.011 7 N -0.380 5.380 8 C 0.405 3.595 9 O -0.514 6.514 10 N -0.382 5.382 11 C 0.014 3.986 12 C 0.221 3.779 13 O -0.512 6.512 14 N -0.195 5.195 15 C -0.466 4.466 16 H 0.104 0.896 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.820 3.180 20 H -0.196 1.196 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.142 4.142 24 C -0.150 4.150 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.175 4.175 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.244 0.756 38 H 0.246 0.754 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.084 0.916 51 H 0.100 0.900 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.963 -13.741 -1.113 28.517 hybrid contribution 0.917 0.914 -0.294 1.328 sum -24.046 -12.827 -1.407 27.290 Atomic orbital electron populations 1.22144 0.93920 1.02844 1.02631 1.22136 0.94767 0.92536 0.88717 1.22069 1.00845 0.96274 1.02583 1.88016 1.71529 1.37948 1.31203 1.21733 0.89288 0.86023 0.95242 1.21976 0.90372 0.92710 0.96003 1.44842 1.19735 1.49178 1.24223 1.15918 0.80645 0.79396 0.83524 1.90876 1.77432 1.60494 1.22571 1.44688 1.21016 1.47888 1.24616 1.20570 0.85278 0.97745 0.95001 1.20416 0.83318 0.85974 0.88201 1.90470 1.69670 1.65116 1.25915 1.41833 1.17582 1.39402 1.20685 1.19727 1.02358 1.21381 1.03086 0.89602 1.26136 0.97367 0.99820 0.97887 1.69682 1.20578 1.44654 1.20696 0.84867 0.77219 0.77821 0.78067 1.19555 1.19636 1.19460 1.21548 0.98144 1.00762 0.93791 1.21421 0.96266 0.99505 0.97793 1.21533 0.99081 0.98120 0.96781 1.21459 0.96906 1.01294 0.95249 1.22076 0.97487 0.98940 0.99022 0.92286 0.91481 0.90924 0.91575 0.92121 0.90939 0.93861 0.91901 0.90912 0.75610 0.75379 0.89140 0.89065 0.76697 0.91074 0.91941 0.89986 0.91663 0.92031 0.91720 0.91502 0.91018 0.91562 0.90041 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.17 71.98 0.66 -1.30 16 2 C 0.08 1.20 2.20 30.59 0.07 1.27 16 3 C -0.16 -2.91 9.56 71.98 0.69 -2.22 16 4 O -0.37 -6.27 8.06 -148.98 -1.20 -7.47 16 5 C 0.12 1.80 0.33 -10.79 0.00 1.80 16 6 C 0.11 2.30 4.30 86.38 0.37 2.67 16 7 N -0.72 -17.34 4.90 -478.54 -2.35 -19.69 16 8 C 0.71 22.74 8.57 179.05 1.53 24.28 16 9 O -0.63 -24.51 16.34 -3.97 -0.06 -24.58 16 10 N -0.72 -24.49 5.53 -482.32 -2.67 -27.16 16 11 C 0.14 5.34 6.15 85.63 0.53 5.87 16 12 C 0.43 20.23 7.85 87.66 0.69 20.92 16 13 O -0.62 -32.47 15.24 -3.07 -0.05 -32.52 16 14 N -0.56 -28.32 5.29 -306.98 -1.62 -29.94 16 15 C -0.34 -18.62 9.68 84.04 0.81 -17.80 16 16 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 17 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 18 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 19 Si 1.00 41.94 29.55 68.60 2.03 43.96 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 C -0.10 -1.58 4.75 30.59 0.15 -1.43 16 24 C -0.11 -1.50 5.78 30.59 0.18 -1.32 16 25 C -0.12 -1.29 5.92 30.59 0.18 -1.10 16 26 C -0.11 -1.21 5.57 30.59 0.17 -1.04 16 27 C -0.14 -1.66 4.55 30.59 0.14 -1.52 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 0.73 6.76 -2.39 -0.02 0.71 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.05 4.89 -2.38 -0.01 1.04 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.04 0.95 7.94 -2.39 -0.02 0.93 16 35 H 0.06 1.35 6.12 -2.39 -0.01 1.34 16 36 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 37 H 0.41 8.78 7.25 -92.70 -0.67 8.11 16 38 H 0.41 13.63 7.45 -92.70 -0.69 12.94 16 39 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.40 19.42 7.90 -92.71 -0.73 18.68 16 42 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 43 H 0.06 1.05 6.84 -2.39 -0.02 1.03 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.06 0.96 7.68 -2.39 -0.02 0.95 16 47 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.07 0.82 6.14 -2.39 -0.01 0.81 16 51 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.07 0.82 6.84 -2.39 -0.02 0.80 16 Total: -1.00 -66.02 406.28 -0.16 -66.18 By element: Atomic # 1 Polarization: 52.04 SS G_CDS: -1.14 Total: 50.89 kcal Atomic # 6 Polarization: 22.31 SS G_CDS: 6.63 Total: 28.93 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -6.35 Total: -125.39 kcal Atomic # 8 Polarization: -63.26 SS G_CDS: -1.31 Total: -64.57 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -66.02 -0.16 -66.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227977902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.121 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds