Wall clock time and date at job start Wed Apr 1 2020 00:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47165 * 2 1 4 4 O 1.42894 * 109.47611 * 120.00112 * 2 1 3 5 5 C 1.42901 * 114.00070 * 89.99685 * 4 2 1 6 6 C 1.53006 * 109.47423 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47072 * 180.02562 * 6 5 4 8 8 O 1.21271 * 120.00247 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99555 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00169 * 0.02562 * 9 7 6 11 11 C 1.46500 * 119.99938 * 179.97438 * 9 7 6 12 12 C 1.52994 * 109.47162 * 89.99845 * 11 9 7 13 13 H 1.09007 * 112.95862 * 287.14685 * 12 11 9 14 14 C 1.53934 * 113.76096 * 155.49645 * 12 11 9 15 15 C 1.53935 * 86.45688 * 221.80153 * 14 12 11 16 16 N 1.47961 * 113.85909 * 58.88682 * 12 11 9 17 17 C 1.46902 * 111.00005 * 251.91231 * 16 12 11 18 18 C 1.50702 * 109.47267 * 189.99947 * 17 16 12 19 19 O 1.21296 * 119.99494 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00134 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00203 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00145 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00446 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00001 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00369 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47006 * 60.00200 * 25 23 21 27 27 H 1.48500 * 109.47542 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47515 * 300.00522 * 25 23 21 29 29 H 1.08999 * 109.46736 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46540 * 299.99496 * 1 2 3 31 31 H 1.08993 * 109.47466 * 59.99730 * 1 2 3 32 32 H 1.09005 * 109.46997 * 240.00248 * 2 1 3 33 33 H 1.09006 * 109.47588 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47326 * 300.00103 * 3 2 1 35 35 H 1.08999 * 109.47376 * 60.00148 * 3 2 1 36 36 H 1.08997 * 109.46989 * 60.00682 * 5 4 2 37 37 H 1.09000 * 109.47351 * 300.00528 * 5 4 2 38 38 H 1.09001 * 109.46612 * 59.99788 * 6 5 4 39 39 H 1.09000 * 109.47160 * 300.00488 * 6 5 4 40 40 H 1.09004 * 109.47013 * 269.99864 * 10 9 7 41 41 H 1.09001 * 109.47915 * 29.99721 * 10 9 7 42 42 H 1.08998 * 109.47280 * 150.00123 * 10 9 7 43 43 H 1.09002 * 109.46652 * 330.00254 * 11 9 7 44 44 H 1.08998 * 109.47142 * 210.00159 * 11 9 7 45 45 H 1.09002 * 113.73279 * 336.21344 * 14 12 11 46 46 H 1.09002 * 113.73078 * 107.39042 * 14 12 11 47 47 H 1.09001 * 113.76001 * 138.09365 * 15 14 12 48 48 H 1.09000 * 113.75996 * 269.45181 * 15 14 12 49 49 H 1.08997 * 109.47246 * 310.00098 * 17 16 12 50 50 H 1.09007 * 109.46957 * 69.99875 * 17 16 12 51 51 H 0.97001 * 119.99910 * 359.97438 * 20 18 17 52 52 H 0.96996 * 119.99994 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9885 6 6 2.7081 -2.6927 2.2944 7 6 2.9129 -4.1738 2.1063 8 8 2.6756 -4.6874 1.0336 9 7 3.3590 -4.9278 3.1305 10 6 3.6440 -4.3077 4.4268 11 6 3.5576 -6.3678 2.9479 12 6 4.9870 -6.6287 2.4688 13 1 5.1480 -6.3352 1.4314 14 6 5.5050 -8.0395 2.8018 15 6 6.8348 -7.3596 3.1743 16 7 6.0286 -6.1349 3.3965 17 6 6.7051 -4.9523 2.8471 18 6 7.9105 -4.6259 3.6907 19 8 8.1793 -5.3109 4.6549 20 7 8.6893 -3.5725 3.3742 21 6 9.7862 -3.2759 4.1413 22 1 10.0261 -3.8862 4.9994 23 6 10.5893 -2.1901 3.8148 24 7 10.2972 -1.4471 2.7709 25 14 12.0835 -1.7856 4.8603 26 1 13.0192 -2.9388 4.8536 27 1 12.7670 -0.5898 4.3054 28 1 11.6520 -1.5065 6.2536 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.9320 -2.2466 0.1986 37 1 1.2538 -2.5434 0.7124 38 1 1.9759 -2.5242 3.0841 39 1 3.6543 -2.2276 2.5710 40 1 4.6839 -3.9820 4.4528 41 1 2.9902 -3.4474 4.5698 42 1 3.4703 -5.0323 5.2223 43 1 2.8519 -6.7405 2.2055 44 1 3.3927 -6.8804 3.8955 45 1 4.9982 -8.5047 3.6473 46 1 5.5759 -8.6967 1.9351 47 1 7.2924 -7.7566 4.0804 48 1 7.5351 -7.2795 2.3428 49 1 7.0219 -5.1572 1.8245 50 1 6.0183 -4.1058 2.8520 51 1 8.4740 -3.0245 2.6033 52 1 10.8577 -0.6889 2.5432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230838596.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:50 Heat of formation + Delta-G solvation = -86.533529 kcal Electronic energy + Delta-G solvation = -30872.429754 eV Core-core repulsion = 26680.289209 eV Total energy + Delta-G solvation = -4192.140545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.46262 -39.44845 -38.40938 -37.65665 -35.43145 -33.91178 -33.53934 -31.46205 -31.22829 -30.45643 -28.70664 -27.46442 -26.48282 -25.71735 -24.36354 -23.64559 -22.55135 -21.53197 -19.63117 -19.23650 -18.96563 -17.89431 -17.51348 -16.62588 -16.35183 -16.11606 -15.87424 -15.70870 -15.40154 -14.99731 -14.63524 -14.53205 -14.02978 -13.82422 -13.71341 -13.49025 -13.41767 -13.10740 -12.80249 -12.66912 -12.61509 -12.44841 -12.36773 -12.20828 -11.97560 -11.67028 -11.63089 -11.48965 -11.43712 -11.32346 -11.26025 -11.04376 -10.85893 -10.76825 -10.49220 -10.43602 -10.20906 -9.84922 -9.71175 -9.49525 -8.87680 -8.43836 -8.19783 -7.96517 -6.41575 -3.82700 2.55931 2.81176 3.19389 3.25324 3.29442 3.56740 3.89378 4.02792 4.23169 4.52594 4.61396 4.65297 4.77616 4.85762 4.89678 4.94218 5.01395 5.02182 5.15643 5.20202 5.23728 5.31024 5.35616 5.40662 5.47594 5.50621 5.55471 5.55964 5.61039 5.63561 5.70831 5.72182 5.74743 5.78080 5.80557 5.86630 5.93771 6.00530 6.03300 6.11403 6.27758 6.37449 6.44575 6.68230 7.07931 7.24433 7.35956 7.54509 8.05161 8.09845 8.61077 9.17603 9.53920 10.05642 10.76035 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007497 B = 0.003271 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3734.154274 B = 8558.724727 C =11694.030458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.082 3.918 3 C -0.151 4.151 4 O -0.385 6.385 5 C 0.080 3.920 6 C -0.140 4.140 7 C 0.518 3.482 8 O -0.549 6.549 9 N -0.604 5.604 10 C 0.080 3.920 11 C 0.140 3.860 12 C 0.007 3.993 13 H 0.078 0.922 14 C -0.140 4.140 15 C 0.020 3.980 16 N -0.443 5.443 17 C 0.014 3.986 18 C 0.444 3.556 19 O -0.579 6.579 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.063 0.937 49 H 0.049 0.951 50 H 0.083 0.917 51 H 0.391 0.609 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.035 -1.943 -4.737 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.024 3.976 3 C -0.208 4.208 4 O -0.304 6.304 5 C 0.003 3.997 6 C -0.180 4.180 7 C 0.306 3.694 8 O -0.427 6.427 9 N -0.336 5.336 10 C -0.063 4.063 11 C 0.017 3.983 12 C -0.104 4.104 13 H 0.096 0.904 14 C -0.178 4.178 15 C -0.108 4.108 16 N -0.165 5.165 17 C -0.118 4.118 18 C 0.229 3.771 19 O -0.463 6.463 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.112 0.888 48 H 0.082 0.918 49 H 0.067 0.933 50 H 0.102 0.898 51 H 0.224 0.776 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.004 -2.176 -3.867 19.515 hybrid contribution 1.013 0.529 -1.045 1.548 sum -17.991 -1.647 -4.912 18.722 Atomic orbital electron populations 1.22303 0.96142 1.02319 1.02486 1.22061 0.93476 0.93824 0.88201 1.21872 1.02158 0.94379 1.02385 1.87866 1.86708 1.20064 1.35803 1.22133 1.00199 0.80951 0.96463 1.21520 1.04723 0.92098 0.99661 1.20401 0.76568 0.88748 0.83696 1.90682 1.51951 1.74397 1.25674 1.47715 1.65000 1.08602 1.12253 1.21904 1.02158 0.98391 0.83806 1.21411 0.94812 0.80131 1.01985 1.23955 0.94218 0.95636 0.96562 0.90392 1.23401 0.97447 0.95345 1.01606 1.23715 0.94656 0.90914 1.01551 1.68432 1.06655 1.00962 1.40496 1.22415 0.96664 0.95993 0.96702 1.19684 0.85555 0.83994 0.87827 1.90516 1.73556 1.52021 1.30201 1.41876 1.24429 1.25894 1.27902 1.19629 1.02006 1.11509 1.09751 0.88029 1.25253 0.99535 0.96089 0.97000 1.69606 1.39906 1.18355 1.26391 0.85932 0.80842 0.77818 0.79703 1.19951 1.20965 1.19878 0.92500 0.91802 0.91723 0.92133 0.91716 0.91352 0.91784 0.92444 0.92740 0.88129 0.87723 0.91196 0.91510 0.90715 0.89711 0.89860 0.89194 0.91244 0.88772 0.91833 0.93295 0.89834 0.77576 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.53 37.16 0.35 -1.05 16 2 C 0.08 0.79 3.34 -26.73 -0.09 0.70 16 3 C -0.15 -1.28 9.56 37.16 0.36 -0.93 16 4 O -0.38 -4.56 9.99 -35.23 -0.35 -4.91 16 5 C 0.08 0.92 5.04 37.16 0.19 1.11 16 6 C -0.14 -1.55 4.62 -27.88 -0.13 -1.68 16 7 C 0.52 6.73 7.67 -10.98 -0.08 6.65 16 8 O -0.55 -8.66 15.56 5.56 0.09 -8.58 16 9 N -0.60 -7.22 2.82 -181.58 -0.51 -7.73 16 10 C 0.08 0.87 9.94 59.84 0.59 1.46 16 11 C 0.14 1.62 5.59 -4.04 -0.02 1.59 16 12 C 0.01 0.09 3.57 -66.65 -0.24 -0.15 16 13 H 0.08 1.12 7.79 -51.92 -0.40 0.71 16 14 C -0.14 -1.62 7.83 -25.80 -0.20 -1.82 16 15 C 0.02 0.31 6.78 -2.57 -0.02 0.30 16 16 N -0.44 -7.13 5.35 -231.83 -1.24 -8.37 16 17 C 0.01 0.26 5.04 -4.97 -0.03 0.24 16 18 C 0.44 10.47 7.59 -10.99 -0.08 10.38 16 19 O -0.58 -15.46 15.13 5.54 0.08 -15.38 16 20 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 21 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 22 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 25 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.56 7.79 -51.93 -0.40 0.15 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 37 H 0.05 0.62 7.83 -51.93 -0.41 0.21 16 38 H 0.10 0.94 7.40 -51.93 -0.38 0.55 16 39 H 0.10 1.18 8.11 -51.93 -0.42 0.76 16 40 H 0.07 0.94 6.76 -51.93 -0.35 0.59 16 41 H 0.07 0.58 6.44 -51.93 -0.33 0.24 16 42 H 0.07 0.75 7.89 -51.93 -0.41 0.34 16 43 H 0.08 0.98 7.42 -51.93 -0.39 0.59 16 44 H 0.08 0.85 7.66 -51.93 -0.40 0.45 16 45 H 0.09 0.94 7.94 -51.93 -0.41 0.52 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 1.59 8.10 -51.93 -0.42 1.17 16 48 H 0.06 1.01 7.79 -51.93 -0.40 0.60 16 49 H 0.05 0.86 7.69 -51.93 -0.40 0.46 16 50 H 0.08 1.45 7.07 -51.92 -0.37 1.08 16 51 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 52 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 421.16 15.07 6.35 6.35 Total: -1.00 -32.64 421.16 -8.68 -41.32 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -9.10 Total: 10.72 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 0.36 Total: 8.83 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -1.09 Total: -54.42 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.18 Total: -28.86 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.64 -8.68 -41.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230838596.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.209 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds